Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d051977_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:4:175738176:175743156:1 gene:Zm00001d051977 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger (C3HC4-type RING finger) family protein
Sequence

ATGGAGAGCAGATGGCGGAAGGCCAAGATGTCGCTAGGGCTCAACCTCTGCGTCTACGTG
CCCCGGACGCTGGAAGGCGACGACGCGGCCAGCTCGCCCGACACCGCCTCCTCCACGGCG
GCGCTCGTGTCGCCGGTGGCCTCCTCCTCGTCCGCCGCGACGAGCACCAACACCACCCCC
ACGGCCGCTTCGGCGGACCAGAGCAGCGCCAGCGGCAAGGTGCTCATGCCCACCACCCCG
ACGCCGACGTCCGCCGGGCTCCGCCTCTCCAAATCCGGCAGCAAATCATTCAAGAAAACA
TGTGCCATATGCTTGACCACAATGAAGCCTGGTCAGGGCCATGCTCTCTTCACAGCAGAG
TGCTCACACACTTTCCACTTCCATTGTATTTCGGCAAATGTTAAGCACGGAAGCAGCAGC
TGCCCAGTGTGTCGTATCAAATGGAAGGAGCTCCCATTTCGAGGTCCCTTGCCTGCTGAA
TTACCTCAAGGAAATGCGAGGATTAATCCAGTTAATGGGTACCAAAATGGAGGCCATATG
AACATATTGCGTCCACTTCCTCGTGCACGCTCTTCTGGCCGGCTTCATCATCTGGCCACG
TTGCTGCCTGACACTGACCCTAGTACTTTCAACGATGATGAACCCTTGGACTTGTCGTCT
GAAGAGGCTAATGACAATCATCAGGGCTGTTTGAGAACAGTAGAGATAAAAACATATCCA
GAGTTCACTGAAGTACCTGAAAATACATCAGAAAGAAACTTCACTGTTCTGATTCACCTT
AAGGCACCGGTTGCTCAGCACCTGCAGCCATCCAGCAATCTCGGAGATGGCAACGGGCTA
AGTACAGCCCGTGCCCCTGTTGATCTCATCACAGTTCTTGATGTCAGTGGAAGTATGGCT
GGTACCAAACTTGCATTGTTGAAGAGGGCTATGGGATTTGTCATTCAGAATCTTGGATCC
TCTGACCGGCTTTCCGTCATCGCCTTCTCATCATCCGCACGTAGGCTCTTCCCACTCCGT
AGGATGACTGAGTCTGGTCGGCAGCAGAGCTTGCTGGCTGTTAATTCACTGACGTCAAAT
GGAGGGACCAATATTGCAGAGGCCCTCAGGAAGGGCTCCAAGGTGATCGAAGAGCGACAG
GCCAAGAATCCAGTCTGCAGCATCATCCTCTTGTCAGATGGTCAAGATACCTACACGGTC
TCACCAACTGCTGGCGTACACAAAGGAGCACCAGAGTATTGTGCGCTCTTGCCGTCCACT
AACGGTAACCAGCAGGTACCTGTTCATGTCTTTGGATTCGGTGCTGACCATGACTCCGTC
TCGCTGCACTCCATCTCACAAACTTCTGGTGGCACCTTCTCATTCATCGAGACAGAGGCC
GCTATCCAAGATGCATTTGCTCAGTGCATTGGTGGACTTTTGAGTGTGGTTGCACAAGGT
CTGCATGTAAAGGTGGAGAGCCTCCACCCCGACGTGCACTTTGGCTCCATCAGATCAGGC
AGCTATTCTAGCAGGGTTTCAGATGATAAGAGGAATGGGTCCATAGATGTTGGGGACCTG
TATGCTGAAGAAGAAAGGGATTTTCTTGTGTCTGTAAACGTCCCACCAGGCTACGGGGAA
ACAGCACTCCTCAAGGTTGGCTGCGTCTACAAAGACCCACTGATGAAGGAGACCGTGAAT
ATGGCTGATGTGCAAGTGAAGATCTCCAGGCCAGCATTCGTCTCGGTACAAAGCGTGTCG
ATCGAGGTGGACCGCCAGAAGAACCGCCTCCATGCAGCCGAGGTGATGGCTGAAGCAAGG
TTTTCTGCAGAGCGCGGTGACCTGACCACCGCTGTTTCTCTACTCGAGGACTGCCGGAGG
ATGATCATGGGGTCGGCGTCAGGACAGTCTGGTGACCGTCTGTGCCAGGCACTGGATGCC
GAGCTGAAGGAGATGCAGGATCGGATGGCCAACCGGCAGAGGTACGAGGCGTCCGGTCGA
GCATATGTGCTCTCAGGCTTGAGCTCGCACTCATGGCAGAGGGCAACCGCCCGCGGGGAC
TCGACGGACAGCGAGAGCCTGATCCAAGCCTACCAGACTTCGTCCATGGTGGACATGCTG
CTTCGCTCGCAGACAATGAGCCGCTCATCGACTCCTCGACCAACGCCACAGATGAGGCAC
GCTAAGTCATTCCCGGCACGCCCGCAGCCAAGGTAA

Peptide Sequence

PEP ID

Zm00001d051977_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:4:175738176:175743156:1 gene:Zm00001d051977 transcript:Zm00001d051977_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger (C3HC4-type RING finger) family protein
Sequence

MESRWRKAKMSLGLNLCVYVPRTLEGDDAASSPDTASSTAALVSPVASSSSAATSTNTTP
TAASADQSSASGKVLMPTTPTPTSAGLRLSKSGSKSFKKTCAICLTTMKPGQGHALFTAE
CSHTFHFHCISANVKHGSSSCPVCRIKWKELPFRGPLPAELPQGNARINPVNGYQNGGHM
NILRPLPRARSSGRLHHLATLLPDTDPSTFNDDEPLDLSSEEANDNHQGCLRTVEIKTYP
EFTEVPENTSERNFTVLIHLKAPVAQHLQPSSNLGDGNGLSTARAPVDLITVLDVSGSMA
GTKLALLKRAMGFVIQNLGSSDRLSVIAFSSSARRLFPLRRMTESGRQQSLLAVNSLTSN
GGTNIAEALRKGSKVIEERQAKNPVCSIILLSDGQDTYTVSPTAGVHKGAPEYCALLPST
NGNQQVPVHVFGFGADHDSVSLHSISQTSGGTFSFIETEAAIQDAFAQCIGGLLSVVAQG
LHVKVESLHPDVHFGSIRSGSYSSRVSDDKRNGSIDVGDLYAEEERDFLVSVNVPPGYGE
TALLKVGCVYKDPLMKETVNMADVQVKISRPAFVSVQSVSIEVDRQKNRLHAAEVMAEAR
FSAERGDLTTAVSLLEDCRRMIMGSASGQSGDRLCQALDAELKEMQDRMANRQRYEASGR
AYVLSGLSSHSWQRATARGDSTDSESLIQAYQTSSMVDMLLRSQTMSRSSTPRPTPQMRH
AKSFPARPQPR

Transcript Sequence

Transcript ID

Zm00001d051977_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:175738176:175743156:1 gene:Zm00001d051977 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger (C3HC4-type RING finger) family protein
Sequence

ACAGTTCAGAGCTCCGCTTCCGCAGCCGGCAGTCGCCACGCCACCCGCCACCGTCCTGTT
GTTTATGCATACGCACAGGAGCACAGCACAGGCGACCCACTGCACTGGTCTGTGGTATGG
TCTGTGGTCATCACTCCCAGCTCCCAAGCTGAGACCTGAAGAAGAAAGAGAGAGGCCCGT
GTCTCTCCTCTCCTCTCCTCCTGCTCACTCCTCGCCATCATTCAGCTCTTCCCCAACCTT
TTCCTTCTCCCCCATAGGGAGCGCGGCGCGGGAGGGCCTGTGCTCCTGCTTGCTTTCGTG
GTGTTGCTGCTGCTTTTCCTCTTTGTTAAAAGGCTGCTCCCTCCGTCTCCTGTCATCTCC
CCTTTCTCTCTTCTCAATTCTCATCGCGCTGGCTTCGCTTGGCTGCTAAGGTCAAATAGC
CATCCATCTGTCCATACGCCTCTTTCCCTTTCTCTTTCCTCTTTAACCCCCCTACGAGGC
TCCGGTCTCAGGGCGCTTCGCATGGCCATGGCCTCCGCGGTGGCTCCGGCTCCTCCCCTT
GCCAGCGACGACCAAACCGGGCAAAAGCGCCGCCAAATCTGCATCTGACCTCCCCACCAC
CAAATACCCAACCAGCACCACCCACCGCCTTCTGCTTTCTTTCTTTCTCGCTCCTTACAG
CAACACATAGCGCTCAGCTCACACCTCACAGTCAGCTCAGGCTCATCTTCTCAGCGAGTT
AGCAGCAGCAGCTTGAGGCCCAGCCGCGGCTGCCTGCGCGCAAGCATAATGGAGAGCAGA
TGGCGGAAGGCCAAGATGTCGCTAGGGCTCAACCTCTGCGTCTACGTGCCCCGGACGCTG
GAAGGCGACGACGCGGCCAGCTCGCCCGACACCGCCTCCTCCACGGCGGCGCTCGTGTCG
CCGGTGGCCTCCTCCTCGTCCGCCGCGACGAGCACCAACACCACCCCCACGGCCGCTTCG
GCGGACCAGAGCAGCGCCAGCGGCAAGGTGCTCATGCCCACCACCCCGACGCCGACGTCC
GCCGGGCTCCGCCTCTCCAAATCCGGCAGCAAATCATTCAAGAAAACATGTGCCATATGC
TTGACCACAATGAAGCCTGGTCAGGGCCATGCTCTCTTCACAGCAGAGTGCTCACACACT
TTCCACTTCCATTGTATTTCGGCAAATGTTAAGCACGGAAGCAGCAGCTGCCCAGTGTGT
CGTATCAAATGGAAGGAGCTCCCATTTCGAGGTCCCTTGCCTGCTGAATTACCTCAAGGA
AATGCGAGGATTAATCCAGTTAATGGGTACCAAAATGGAGGCCATATGAACATATTGCGT
CCACTTCCTCGTGCACGCTCTTCTGGCCGGCTTCATCATCTGGCCACGTTGCTGCCTGAC
ACTGACCCTAGTACTTTCAACGATGATGAACCCTTGGACTTGTCGTCTGAAGAGGCTAAT
GACAATCATCAGGGCTGTTTGAGAACAGTAGAGATAAAAACATATCCAGAGTTCACTGAA
GTACCTGAAAATACATCAGAAAGAAACTTCACTGTTCTGATTCACCTTAAGGCACCGGTT
GCTCAGCACCTGCAGCCATCCAGCAATCTCGGAGATGGCAACGGGCTAAGTACAGCCCGT
GCCCCTGTTGATCTCATCACAGTTCTTGATGTCAGTGGAAGTATGGCTGGTACCAAACTT
GCATTGTTGAAGAGGGCTATGGGATTTGTCATTCAGAATCTTGGATCCTCTGACCGGCTT
TCCGTCATCGCCTTCTCATCATCCGCACGTAGGCTCTTCCCACTCCGTAGGATGACTGAG
TCTGGTCGGCAGCAGAGCTTGCTGGCTGTTAATTCACTGACGTCAAATGGAGGGACCAAT
ATTGCAGAGGCCCTCAGGAAGGGCTCCAAGGTGATCGAAGAGCGACAGGCCAAGAATCCA
GTCTGCAGCATCATCCTCTTGTCAGATGGTCAAGATACCTACACGGTCTCACCAACTGCT
GGCGTACACAAAGGAGCACCAGAGTATTGTGCGCTCTTGCCGTCCACTAACGGTAACCAG
CAGGTACCTGTTCATGTCTTTGGATTCGGTGCTGACCATGACTCCGTCTCGCTGCACTCC
ATCTCACAAACTTCTGGTGGCACCTTCTCATTCATCGAGACAGAGGCCGCTATCCAAGAT
GCATTTGCTCAGTGCATTGGTGGACTTTTGAGTGTGGTTGCACAAGGTCTGCATGTAAAG
GTGGAGAGCCTCCACCCCGACGTGCACTTTGGCTCCATCAGATCAGGCAGCTATTCTAGC
AGGGTTTCAGATGATAAGAGGAATGGGTCCATAGATGTTGGGGACCTGTATGCTGAAGAA
GAAAGGGATTTTCTTGTGTCTGTAAACGTCCCACCAGGCTACGGGGAAACAGCACTCCTC
AAGGTTGGCTGCGTCTACAAAGACCCACTGATGAAGGAGACCGTGAATATGGCTGATGTG
CAAGTGAAGATCTCCAGGCCAGCATTCGTCTCGGTACAAAGCGTGTCGATCGAGGTGGAC
CGCCAGAAGAACCGCCTCCATGCAGCCGAGGTGATGGCTGAAGCAAGGTTTTCTGCAGAG
CGCGGTGACCTGACCACCGCTGTTTCTCTACTCGAGGACTGCCGGAGGATGATCATGGGG
TCGGCGTCAGGACAGTCTGGTGACCGTCTGTGCCAGGCACTGGATGCCGAGCTGAAGGAG
ATGCAGGATCGGATGGCCAACCGGCAGAGGTACGAGGCGTCCGGTCGAGCATATGTGCTC
TCAGGCTTGAGCTCGCACTCATGGCAGAGGGCAACCGCCCGCGGGGACTCGACGGACAGC
GAGAGCCTGATCCAAGCCTACCAGACTTCGTCCATGGTGGACATGCTGCTTCGCTCGCAG
ACAATGAGCCGCTCATCGACTCCTCGACCAACGCCACAGATGAGGCACGCTAAGTCATTC
CCGGCACGCCCGCAGCCAAGGTAACTGCTATTTGGTGTCACCAAGGATTTGCCTGAAGCC
TAATTTGCTTGCCGATGGGCGTAGTAGCGCCCTCTAAATTCTTAGTTTTGTGGCGGGAGG
ACGGGACCAGGGTATAGTTTGTGTGGGTACAAGGGGATGTAATGGTGTAAATTTGATCTG
GGGTGGTGGAGGTAAATGGTGAGAGGGGTAAGGTATTTTATAATTGAGGGGGTCGGGGAT
GGTATACGTCCTGGGGAGAATTGGGCAGGAGGGTGGTGAACTGGTATACTCTAGTATTGT
ACTAGCTCCTTCGTGTGGTGATGTACATAAGGGAAGGGTATACATTTGTGGACTCTTTGA
GGAGGGATGGATACCTAATCCTGATCCCGATCCTTGCAATGTTTGTTTCCTCAGCCTGGA
AAAGGACTAAGGTTTGTTGCCTCTTTCTGGAAATGGAATTGATGATGATCCTGGGTATTT
TTTCCTTGTGCCTAG