Plant GARDEN
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d051871_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:4:172954176:172960946:-1 gene:Zm00001d051871 gene_biotype:protein_coding transcript_biotype:protein_coding description:RING/U-box superfamily protein
Sequence

ATGGACGAGTACCACCACCACCACCAGCGCATGGGCGCCGCCGCCGACTTCCGCCGCGAC
CTCGAGGACCTCGTCTGCGACCACCTCGGCGGCTGCTTCTCCCCGGCCCCGTCCTCCTCC
TCCTCCTGCTCCGCCGCGGCGGGCGGAGGCGCCGCGGACCATGAGCCCGACGGCGAGGCC
GAGTCGTCGGCGGTGCGCAGGCGGAGGCGGGAGTCGCGCCTCCTCAGCCGCTGGGTCGCG
CGCCAGGCTGAGGAGGTGCTCTCCTCCATGGAGCGCGAGGTCGAGCGCCGCAACCGCGAG
GCCGAGCTCCTCGCGCTCGCGCGCCTCCACCCGGTCTCCACCCTCGACCCCTCCTCCTTC
CTCCTCTCCTCGACCGCCGCGCCGCCGCCGCCGCGCCCGCAGGCGCCCTCCCTCAACGCG
CCCTCCTCGCTCCTGCAGATGTGGCGCGAGCTCGAGCACCCCCGCGCCGACGCCGCCCAC
CCCTTCGACCGCGAGCCTTCCCCGGACAACGCCGACCGTGACCGCGAGCGCGTGCGCCAG
ATCGCGCGACGCCTCACGGACACCGCCGCCGCCGCTGCCACCGCCACCGCCGGTGGGGAG
TGGCTCGGCGAGACGGAGCGGCAGAGGGTCAGGCTCGTAAGGGAGTGGGTACAGATGGCG
AGCCAGCCGCGCGACTCCCGTGCGGGCACGCGCAGGGACGAGCCTGCAGCCGGGACCGAC
AGGGACAGGCGAGGGGAGCTGGAGCCTCCTCGGCTACGAGGCCGGCAGGCGCGATTGGAT
GTCATCAGCCGTATGGCCAGGGAGCGTCAGCGCGAGCTGCAGGGCATATCAGGGTACCAT
GTGGTGTCGGAGTTTCCTCGCCGCAGCCGCAACCGCATCCAGGGACTGCTTAGGGGAAGG
TTCTTAAGGAATGGGGCGCTTGAAGAGGAGCGACCACCATCTGTGGCAGCGAGGGAGCTT
GGGCAGTTGAGGCAGAGCCATCGTATGCCCGCCTTGAGACCAGAGAGTATTGCAAGTAGT
CAAGATGTTAGCCAATCTGATGCTTCTGTGGTTGAGAGTGTTAGATTACTAGATAACGAT
GAATCTCAGCAAGGGGCTGAGGTGGCTTTTACTGATAGTGAGGATACCACCCAAACTGTG
CTGGAGAATGTGGATTTACAAGAAATGGGTGCAGATGGTGCTGAGGCACACTCACCAAGT
ATACCTATGGATGACATGGTTATGATGCAAGAGTCTCTAACTCAAGGTGACAACATGCAG
CAAGATGGGACAGAAGATGACACGGGATTCTGGCAGACATCTTTGGATGCCAGTCTTAAT
AGGTGGCCCAGTGAGATTGGTGGAGGTGCCGACAGAACTTGGGAAGATAATGCAGAAGAC
TTACACAGTGAAACCATGGAGGAGGATGACAGGGAGCATGGTCATCTACAAGAAGAGCAT
GATGGATGGCATGATAACGAGTCTCATGGTACCATGGAGAACTGGCAAGATGATTACCAA
GATTCCGCACTTGATACAGGCCCCATTCCTAGGAACGAAAATAGGTTTATCCCACCTGAC
GATGACAATGTGTACAGCATGGAACTTAGAGAATTACTTAGCAGGCGAAGTGTGTCCAAT
CTTCTTAGTAATGGTTTTGGTGAAAGTTTGGAGCGATTAATAAGGTCATATGTTCAACAG
CGTGGTCATGGTCCCCTCAACTGGAATCTTGATGCAGCCATGCACCCTTCAAATGGACCA
AATGCAAATCAGGAACAAGAACGGAACCCTGAAACTCAGCAATTCCAGGCTCCTGTCAAT
AGACCTGCCCTTGTTATCCCTCCTCCACCTTTGCCACCACGACAACCATTATGGCACAGA
GAACTGCGTCATAACAACTGGAACAGCAGACACAGGGAATGGGATGCTATTAATGATTTA
AGAGCTGACATGGGTAGACTTCAGCAAGGGATGAGCAGCATGCAGAGGATGCTGGAAGCG
TGCATGGACATGCAGCTGGAATTGCAGCGTTCTGTGAGACAAGAAGTGTCAGCTGCCTTG
AATCGGTTTGCAGGACCTGAAGGATTGTCGATGGATCTGTGTGACGATGGATCAAAATGG
AATCAGGTGAGGACAGGAACCTGCTGCGTATGCTGTGATTCACAGATTGATTCTCTACTG
TACAGGTGTGGGCACATGTGTACTTGCTCGAAATGTGCAAATGAGCTGGTGCGCAGCGGC
GGCAAGTGCCCGCTCTGCCGGGCTCCCATCGTGGAGGTGGTCCGCGCATACTCGGTAATG
TAA

Peptide Sequence

PEP ID

Zm00001d051871_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:4:172954176:172960946:-1 gene:Zm00001d051871 transcript:Zm00001d051871_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:RING/U-box superfamily protein
Sequence

MDEYHHHHQRMGAAADFRRDLEDLVCDHLGGCFSPAPSSSSSCSAAAGGGAADHEPDGEA
ESSAVRRRRRESRLLSRWVARQAEEVLSSMEREVERRNREAELLALARLHPVSTLDPSSF
LLSSTAAPPPPRPQAPSLNAPSSLLQMWRELEHPRADAAHPFDREPSPDNADRDRERVRQ
IARRLTDTAAAAATATAGGEWLGETERQRVRLVREWVQMASQPRDSRAGTRRDEPAAGTD
RDRRGELEPPRLRGRQARLDVISRMARERQRELQGISGYHVVSEFPRRSRNRIQGLLRGR
FLRNGALEEERPPSVAARELGQLRQSHRMPALRPESIASSQDVSQSDASVVESVRLLDND
ESQQGAEVAFTDSEDTTQTVLENVDLQEMGADGAEAHSPSIPMDDMVMMQESLTQGDNMQ
QDGTEDDTGFWQTSLDASLNRWPSEIGGGADRTWEDNAEDLHSETMEEDDREHGHLQEEH
DGWHDNESHGTMENWQDDYQDSALDTGPIPRNENRFIPPDDDNVYSMELRELLSRRSVSN
LLSNGFGESLERLIRSYVQQRGHGPLNWNLDAAMHPSNGPNANQEQERNPETQQFQAPVN
RPALVIPPPPLPPRQPLWHRELRHNNWNSRHREWDAINDLRADMGRLQQGMSSMQRMLEA
CMDMQLELQRSVRQEVSAALNRFAGPEGLSMDLCDDGSKWNQVRTGTCCVCCDSQIDSLL
YRCGHMCTCSKCANELVRSGGKCPLCRAPIVEVVRAYSVM

Transcript Sequence

Transcript ID

Zm00001d051871_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:172954176:172960946:-1 gene:Zm00001d051871 gene_biotype:protein_coding transcript_biotype:protein_coding description:RING/U-box superfamily protein
Sequence

ACCTTGCTCCTCAACCTCTCTCTCTCTCTCCTTTCCTCCGTGAGTTGCGTCTCCACCTCT
CCTCCCTCTTCCTTCCGTCCTCGTCCTCCCCACCCAATCCAACCCCCTCCCCGCCGTCCC
CGAGGCTGGCTGTAGCCGTCTCTCCGGCTCTGGCTCGCAATCCAACCTCCAATCGCTCGC
GAATGCCGCCTCCTCGCCGCGGCCCCAACCCCGCCCTAATCCCCACCCCGTCGCCTCCGC
ATTAGCCATTTCCCAGCCAACAATCTCTTCTCCTCGCGTTAGGGTTAGGGCACCCCATCT
ATCTATTGCGACAGACAAAACGACATGGACGAGTACCACCACCACCACCAGCGCATGGGC
GCCGCCGCCGACTTCCGCCGCGACCTCGAGGACCTCGTCTGCGACCACCTCGGCGGCTGC
TTCTCCCCGGCCCCGTCCTCCTCCTCCTCCTGCTCCGCCGCGGCGGGCGGAGGCGCCGCG
GACCATGAGCCCGACGGCGAGGCCGAGTCGTCGGCGGTGCGCAGGCGGAGGCGGGAGTCG
CGCCTCCTCAGCCGCTGGGTCGCGCGCCAGGCTGAGGAGGTGCTCTCCTCCATGGAGCGC
GAGGTCGAGCGCCGCAACCGCGAGGCCGAGCTCCTCGCGCTCGCGCGCCTCCACCCGGTC
TCCACCCTCGACCCCTCCTCCTTCCTCCTCTCCTCGACCGCCGCGCCGCCGCCGCCGCGC
CCGCAGGCGCCCTCCCTCAACGCGCCCTCCTCGCTCCTGCAGATGTGGCGCGAGCTCGAG
CACCCCCGCGCCGACGCCGCCCACCCCTTCGACCGCGAGCCTTCCCCGGACAACGCCGAC
CGTGACCGCGAGCGCGTGCGCCAGATCGCGCGACGCCTCACGGACACCGCCGCCGCCGCT
GCCACCGCCACCGCCGGTGGGGAGTGGCTCGGCGAGACGGAGCGGCAGAGGGTCAGGCTC
GTAAGGGAGTGGGTACAGATGGCGAGCCAGCCGCGCGACTCCCGTGCGGGCACGCGCAGG
GACGAGCCTGCAGCCGGGACCGACAGGGACAGGCGAGGGGAGCTGGAGCCTCCTCGGCTA
CGAGGCCGGCAGGCGCGATTGGATGTCATCAGCCGTATGGCCAGGGAGCGTCAGCGCGAG
CTGCAGGGCATATCAGGGTACCATGTGGTGTCGGAGTTTCCTCGCCGCAGCCGCAACCGC
ATCCAGGGACTGCTTAGGGGAAGGTTCTTAAGGAATGGGGCGCTTGAAGAGGAGCGACCA
CCATCTGTGGCAGCGAGGGAGCTTGGGCAGTTGAGGCAGAGCCATCGTATGCCCGCCTTG
AGACCAGAGAGTATTGCAAGTAGTCAAGATGTTAGCCAATCTGATGCTTCTGTGGTTGAG
AGTGTTAGATTACTAGATAACGATGAATCTCAGCAAGGGGCTGAGGTGGCTTTTACTGAT
AGTGAGGATACCACCCAAACTGTGCTGGAGAATGTGGATTTACAAGAAATGGGTGCAGAT
GGTGCTGAGGCACACTCACCAAGTATACCTATGGATGACATGGTTATGATGCAAGAGTCT
CTAACTCAAGGTGACAACATGCAGCAAGATGGGACAGAAGATGACACGGGATTCTGGCAG
ACATCTTTGGATGCCAGTCTTAATAGGTGGCCCAGTGAGATTGGTGGAGGTGCCGACAGA
ACTTGGGAAGATAATGCAGAAGACTTACACAGTGAAACCATGGAGGAGGATGACAGGGAG
CATGGTCATCTACAAGAAGAGCATGATGGATGGCATGATAACGAGTCTCATGGTACCATG
GAGAACTGGCAAGATGATTACCAAGATTCCGCACTTGATACAGGCCCCATTCCTAGGAAC
GAAAATAGGTTTATCCCACCTGACGATGACAATGTGTACAGCATGGAACTTAGAGAATTA
CTTAGCAGGCGAAGTGTGTCCAATCTTCTTAGTAATGGTTTTGGTGAAAGTTTGGAGCGA
TTAATAAGGTCATATGTTCAACAGCGTGGTCATGGTCCCCTCAACTGGAATCTTGATGCA
GCCATGCACCCTTCAAATGGACCAAATGCAAATCAGGAACAAGAACGGAACCCTGAAACT
CAGCAATTCCAGGCTCCTGTCAATAGACCTGCCCTTGTTATCCCTCCTCCACCTTTGCCA
CCACGACAACCATTATGGCACAGAGAACTGCGTCATAACAACTGGAACAGCAGACACAGG
GAATGGGATGCTATTAATGATTTAAGAGCTGACATGGGTAGACTTCAGCAAGGGATGAGC
AGCATGCAGAGGATGCTGGAAGCGTGCATGGACATGCAGCTGGAATTGCAGCGTTCTGTG
AGACAAGAAGTGTCAGCTGCCTTGAATCGGTTTGCAGGACCTGAAGGATTGTCGATGGAT
CTGTGTGACGATGGATCAAAATGGAATCAGGTGAGGACAGGAACCTGCTGCGTATGCTGT
GATTCACAGATTGATTCTCTACTGTACAGGTGTGGGCACATGTGTACTTGCTCGAAATGT
GCAAATGAGCTGGTGCGCAGCGGCGGCAAGTGCCCGCTCTGCCGGGCTCCCATCGTGGAG
GTGGTCCGCGCATACTCGGTAATGTAAGGTGGTGGAAGATACAGTCAGTAGGAAAGGAAT
AAGTTGACGGCAAGCGAAGTTTTGCTGCAAGTGAAGAAAAGCTTGTTTAGGAAATGGACC
CCCTCCCAATCCCCCAAAAAAGAACTCTGTTTTTCCTCCTTTGTGAATCTATAGGGGAGG
CTACTTACGTTGCCTGCATATTCGTTGCCTTGCTGCTCGTGTCGCCGAGACGCAGGCGGC
AAAGGGCGTGCCATTAATTTTTGGAAGAGCTTGCGTTGGGAAGTGGTGTCCCCAGTGCAA
GCTGTTTCACTGTATATTTATACACTGACTGATCCTCAACTGAAGCAGACACCAGCAATG
CATTGGTATATACCAGGTTCCTTGATCACTCTCTGGTCCTCCCAGTGAGCATTGAGCTGT
GATGTGTCAGTGTTTGGTGCGTTACATCTGCGTATCAGTCCGTAGTGTGGTAGTGGGTAT
GTAGCTTTCAGCTCCCGTTGCCTTTGGTTGAGTCGACTTCTCTTTCAAATGCACGGTCCG
TGATGTTTCGAGCTGCTGTTGTACGCTACACGGAGAATGTACGCTTACAAACATATCACA
TATGAATATTGATGAAATATAGTACAGTATTATTGTGC