Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d051809_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:4:170142800:170148637:-1 gene:Zm00001d051809 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nicastrin
Sequence

ATGTCGGCCGGCTCCACGGCGTCCCTCCTCGCGGCCGTCATCTGCCTTGCCCTCGCCGTG
CTTGCTCCCGTCGTTCCTGGAGATGGTGCCACATTGGAATCAGTTCCAGACCTTGTGAAG
GCAATGTACCTAAACGTTGAAAGCTTCCCTTGTGTGAGGCTGTTGAATCTTTCTGGTGAA
ATTGGCTGTTCTAATCCTGGAAGTGAGAAGGTCATTGCACCAATTGTAAGACTTAGAAAA
GGCAGTGATCAATTGGTTCAACCATCTACTATTCTCCTTTCCTTAGATCAGATGTCAGAT
TTCTTTCTGAGGGTATCCAATGATCCAGAACTTCACCAGAAGGTGGCAGGTGTATTGGTT
GAGTCAAATGGTGTCAACAATGACTTACAAGAGCTGTCTCCTGATAGAAAATTTCCACAA
GATGATTTTGCACCCTACTCAAATCACAGCCATGATTGGAATCCTGCTGGATCAGGTATC
ATGTGGAACAAATATAATTTTCCTGTATTTCTACTTTCAGAAGAGAGTACAAACACTCTT
CAAAAGATTTCAGAAAAAAATGAGAAGACTGGCAATGGATATAAAGCAAATGTTGCAGAA
TTCGACCTTGTTATGCAGACAACCAAAGCTCAAACACATGATTCAGCATCCTGCCTCAAA
GAACAATCATGCTTGCCCTTAGGTGGACACAGTGTATGGACTTCATTACCGCCACTTAAT
AACGGATCTACAGAGCATCCGAAACCTTTAATATTGGCTATTGCGTCTCAAGACTCTGCA
TCATTTTTTCGGGACCGTAGTCTTGGTTCAGATTCTCCCATATCTGGATTGATTGCTTTG
CTCACTGCTGTTGATGCTCTTTCTCACATTCATGGTCTAAGCAAGCTTAAGAAACAGCTT
GTGTTCGCTGTTTTTAATGGTGAGGCCTGGGGTTATCTTGGTAGTCGGAAATTCTTACAG
GAATTAGATGAAGGCGCTGCTTCTGTGAATGGAATTAGTAGCTTAAAGATTGACCAGGTA
CTGGAGATTGGTTCTGTTGGCAAGGCTATACTTGAGGAATATCCATCATTTTATGTGCAT
GCTGAAGGGAATCCATCAGCTTCAAAGGAAATATTAGATGCACTGCAAAGTGCCAGCAAG
TCTCTTGGTTCTGATAATGTTAAAGTAAAACAAGCAGCTTCATCAAATCCTGGTGTTCCA
CCATCTTCATTAATGTCATTCATAAGGAAGAACATGTCAACTTCTGGAGTTGTGTTGGAG
GATTTTGATTCCCACTTCTCCAATAGATTTTATCATAGCTATCTGGATAACTCTGTAAAC
ATCAATTCCTCGTCAATAGCTGCAGCCGCCGCTTTGGTTGCGAGGTCGATGTATATTCTT
GCTAGTGATGACTCAGTTGTTGACCTTATAACACTAAACACTATAAAAGTGAACGTTTCA
TTGGTCGAAGAACTTATTGGATGCCTGCTTACTTGCAATCCTGGTCTTTCGTGCGGCCTT
GTGAAAAGATTCATTTCTCCAAGCAATCCCTGCCCAAGTCATTATGTTGGTGTTTTTCTG
GATGACCCATCTGGCACGCAGCTTCCTTCATATGCAGATGACACGTCTCGGTTTGTATGG
AACTTTTTGGCAGACAGAACTAATTCAGCAGGCAATAAAAGCTCATGTACTGGAAAGTGT
GGTGATGAAGGTGAAGTATGTGTAGGGGCAGAGGTGGAGGGTGGAGGTAGATGTGTTGTA
TCTACAACCAGGTATGTTCCTGCTTATTCAACTCGGGTGAAGTTTGAGGACAATGCATGG
CACGTTCTTCCAGCGAACTCGTCAGATCCAATGGGTGCTGCAGATCCCGTGTGGACTGAA
AGCTTCTGGAACACTATTGGCCTCAGGGTCTACGCCGTGCAAGATCCAGCTTACGATTGG
CTTATTCTTCTTGCCGGGCTCGGAATCACTGCTGCATCTTATTGCGCTGTACACTTTGGC
AGAGCATACATTTCAAAGGTGGCGAAGCTTGACTGA

Peptide Sequence

PEP ID

Zm00001d051809_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:4:170142800:170148637:-1 gene:Zm00001d051809 transcript:Zm00001d051809_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nicastrin
Sequence

MSAGSTASLLAAVICLALAVLAPVVPGDGATLESVPDLVKAMYLNVESFPCVRLLNLSGE
IGCSNPGSEKVIAPIVRLRKGSDQLVQPSTILLSLDQMSDFFLRVSNDPELHQKVAGVLV
ESNGVNNDLQELSPDRKFPQDDFAPYSNHSHDWNPAGSGIMWNKYNFPVFLLSEESTNTL
QKISEKNEKTGNGYKANVAEFDLVMQTTKAQTHDSASCLKEQSCLPLGGHSVWTSLPPLN
NGSTEHPKPLILAIASQDSASFFRDRSLGSDSPISGLIALLTAVDALSHIHGLSKLKKQL
VFAVFNGEAWGYLGSRKFLQELDEGAASVNGISSLKIDQVLEIGSVGKAILEEYPSFYVH
AEGNPSASKEILDALQSASKSLGSDNVKVKQAASSNPGVPPSSLMSFIRKNMSTSGVVLE
DFDSHFSNRFYHSYLDNSVNINSSSIAAAAALVARSMYILASDDSVVDLITLNTIKVNVS
LVEELIGCLLTCNPGLSCGLVKRFISPSNPCPSHYVGVFLDDPSGTQLPSYADDTSRFVW
NFLADRTNSAGNKSSCTGKCGDEGEVCVGAEVEGGGRCVVSTTRYVPAYSTRVKFEDNAW
HVLPANSSDPMGAADPVWTESFWNTIGLRVYAVQDPAYDWLILLAGLGITAASYCAVHFG
RAYISKVAKLD

Transcript Sequence

Transcript ID

Zm00001d051809_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:170142800:170148637:-1 gene:Zm00001d051809 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nicastrin
Sequence

ATCACGTGGCAAGGCCCAAGGCCCATGACTGTGCTACTCCTTTCCGACCTTCTCGTCCCA
GTCGACGAAAACGAACAGCCCCTCGCTTTAGATTGCCGCAAGTTCCCCCATTCCTGTAGA
TCGCCGGCCCCTCGCTCGGCTCGGCCATGTCGGCCGGCTCCACGGCGTCCCTCCTCGCGG
CCGTCATCTGCCTTGCCCTCGCCGTGCTTGCTCCCGTCGTTCCTGGAGATGGTGCCACAT
TGGAATCAGTTCCAGACCTTGTGAAGGCAATGTACCTAAACGTTGAAAGCTTCCCTTGTG
TGAGGCTGTTGAATCTTTCTGGTGAAATTGGCTGTTCTAATCCTGGAAGTGAGAAGGTCA
TTGCACCAATTGTAAGACTTAGAAAAGGCAGTGATCAATTGGTTCAACCATCTACTATTC
TCCTTTCCTTAGATCAGATGTCAGATTTCTTTCTGAGGGTATCCAATGATCCAGAACTTC
ACCAGAAGGTGGCAGGTGTATTGGTTGAGTCAAATGGTGTCAACAATGACTTACAAGAGC
TGTCTCCTGATAGAAAATTTCCACAAGATGATTTTGCACCCTACTCAAATCACAGCCATG
ATTGGAATCCTGCTGGATCAGGTATCATGTGGAACAAATATAATTTTCCTGTATTTCTAC
TTTCAGAAGAGAGTACAAACACTCTTCAAAAGATTTCAGAAAAAAATGAGAAGACTGGCA
ATGGATATAAAGCAAATGTTGCAGAATTCGACCTTGTTATGCAGACAACCAAAGCTCAAA
CACATGATTCAGCATCCTGCCTCAAAGAACAATCATGCTTGCCCTTAGGTGGACACAGTG
TATGGACTTCATTACCGCCACTTAATAACGGATCTACAGAGCATCCGAAACCTTTAATAT
TGGCTATTGCGTCTCAAGACTCTGCATCATTTTTTCGGGACCGTAGTCTTGGTTCAGATT
CTCCCATATCTGGATTGATTGCTTTGCTCACTGCTGTTGATGCTCTTTCTCACATTCATG
GTCTAAGCAAGCTTAAGAAACAGCTTGTGTTCGCTGTTTTTAATGGTGAGGCCTGGGGTT
ATCTTGGTAGTCGGAAATTCTTACAGGAATTAGATGAAGGCGCTGCTTCTGTGAATGGAA
TTAGTAGCTTAAAGATTGACCAGGTACTGGAGATTGGTTCTGTTGGCAAGGCTATACTTG
AGGAATATCCATCATTTTATGTGCATGCTGAAGGGAATCCATCAGCTTCAAAGGAAATAT
TAGATGCACTGCAAAGTGCCAGCAAGTCTCTTGGTTCTGATAATGTTAAAGTAAAACAAG
CAGCTTCATCAAATCCTGGTGTTCCACCATCTTCATTAATGTCATTCATAAGGAAGAACA
TGTCAACTTCTGGAGTTGTGTTGGAGGATTTTGATTCCCACTTCTCCAATAGATTTTATC
ATAGCTATCTGGATAACTCTGTAAACATCAATTCCTCGTCAATAGCTGCAGCCGCCGCTT
TGGTTGCGAGGTCGATGTATATTCTTGCTAGTGATGACTCAGTTGTTGACCTTATAACAC
TAAACACTATAAAAGTGAACGTTTCATTGGTCGAAGAACTTATTGGATGCCTGCTTACTT
GCAATCCTGGTCTTTCGTGCGGCCTTGTGAAAAGATTCATTTCTCCAAGCAATCCCTGCC
CAAGTCATTATGTTGGTGTTTTTCTGGATGACCCATCTGGCACGCAGCTTCCTTCATATG
CAGATGACACGTCTCGGTTTGTATGGAACTTTTTGGCAGACAGAACTAATTCAGCAGGCA
ATAAAAGCTCATGTACTGGAAAGTGTGGTGATGAAGGTGAAGTATGTGTAGGGGCAGAGG
TGGAGGGTGGAGGTAGATGTGTTGTATCTACAACCAGGTATGTTCCTGCTTATTCAACTC
GGGTGAAGTTTGAGGACAATGCATGGCACGTTCTTCCAGCGAACTCGTCAGATCCAATGG
GTGCTGCAGATCCCGTGTGGACTGAAAGCTTCTGGAACACTATTGGCCTCAGGGTCTACG
CCGTGCAAGATCCAGCTTACGATTGGCTTATTCTTCTTGCCGGGCTCGGAATCACTGCTG
CATCTTATTGCGCTGTACACTTTGGCAGAGCATACATTTCAAAGGTGGCGAAGCTTGACT
GAAGCGTCAGTGAGCTGCCCCACTGATAATGGGTATCTAGAGCTGGAAATAGAACTAATT
AGGCTGGCAATTCGTAGAACATTAGCAGCGCATGAGACAGGGTGATTAAGCTGCGAGAAA
GCCGCAATAAATTATGAGAACCAAGCACACCCGAAGCAAGTCCTCCATCATTATGCGGAC
GTCCAGGTCGATGTAATATTAATGAAATTGTGACCGTGTTACGTTTTGTGTTGAACTGGT
ACTGGTAGGTAGGTTATGACACGCCTCTAGCTCTAGTTGGTGGATGTTTCCGGTAACGTG
TTTTTCTGTTTGTGGATCCTGCCTACTCAGTTTTGGTTGCGTATAAGCCTGCCCCTCATG
AATCCTATGAGTTTGTGAACACCAACTATTATACTGGTGACTTGCATTCGCAT