Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d051778_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:4:169305662:169310746:-1 gene:Zm00001d051778 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGACGTCCTCTGTAGCAGGAACAATGGATATTGAGATGCCTTTAGGCAACAACCTGTGG
AGCGAGAACATGGGTGTCGATGAAGATAATGAAGCTATCACCCGAGCCAACAAAGAAATC
AGTGCAGAGCCTACTCCACTTGATCAGGACAGCGAGTCGACAGAGCAAGCGGAGGATGTC
GTGGACTTGACGGAGCTGAAAGAGAAGGTGATTGGGGCTGTTCCTTTTCCTCCACAGCGC
CTCGACGGCTGGATGCAGCAATGGCCAACCATCTACGTGGTCCCCGGCGACCTAGCCGCC
GGAAAAACGGACCCCTACGCCCCCGCCACCGTCTGCTTCGGGCCGCTCTTCGGTCCGGCG
AGGCGTGTGACGGACGGCATGGCGAAGCTGGAGCGCTACAAATTGTGCTGTCTTCGCAAG
CTCATCGTGGGGCGCAGCCCTAGCCCTGCAGGAACTGGAACCCGACCTGCAGAGCCAGCC
GTGTGGAAGCCGGAGGTGCACGAACCGATGCTTCGCAGTTGCGTGGACGCGATGACAAGA
CTGCTCCCGAGAATTCGTGCTTCCTACAGCATCGCCTCATCTATGGACACCATCGCTGGC
GACGAAAACACCGTGCGAGAAGTCAAGATGCTGCTCTACCCCAACCCCGAGGTCGCCGCC
GTCATGGGATCAACTCTGGCTGAGAACATGCTGCTGGACGGCTGCTTCATCCTCCACCGC
CTGCTCAAGATGGCAAGCAGAGCAGCAGGGAAACGCTACGACGACGACGACGATGACTGG
ACCCAGGTGTTTGGTCGGCGCGGGGTATGGGCGCTTGTCACGCGCGACCTGCTGCTGCTC
CACAACCAAATCCCCTTGTTTGTCATCAAGGCTCTGCTGAAGCAGCTTAAGGGTCCAGCT
GATATCGAAGACGACGACGTCCTCGTGGACGGCGGCCTTCAGCTCTTCAGCTCGCTCCAT
CCTCGGAGGAGGCTGCAGCCCTCGCCGGACGACTCGCTCCGCCTCCGCCTCCGCGACGCG
CACCACCTCCTGCACCTCTTCTACCTGTCCATCACCAACATCCCGACGCAGTCATCAGCC
TCAGCGTCGCCGGACAAGAAGCTTCCACCGGAGCTCACGCAGTGGGTGCCGTGCGCCAAG
GAGCTGGAGGACGCAGGCGTGAGATTCCGGGCGAGGAAGGACGGCACCGCGACGGGCTTC
CTGGACATCAGGTTCTCCGCCGTCGGCGTCCTGGAGATCCCGCCGCTGCAGCTCTACGAC
TACAGCGAGCCTCTGTTCCGGAACCTAATCGCGTTCGAGCAGACCTACCCGGACACGCCG
GGCCACGTCACCGCCTACGCCATCTTCATGGACTGCCTCGTCAAGACATCCGACGACATG
CGACTCCTCCACAGCCGCGGGATACTGCTCAACCACATGAGCGGCGACAGGGAGGCGGCC
ACGGGGTTCTTCAGCGGCATCTGCGCCGGAGCGCACGCCTCGGCCGACCGGAACTATCTC
GCCCCACTCATGGACGAGGTGGTCAGGTACCAGAGTGGAAGGTGGCCCCAGTGGCGTGCC
GCGCTGCTGCGGGACTACTTCGGAAACCCGTGGGCGGTCATCGCGTTTGTTGCGGCGGCG
ATCGTGCTCGCGCTTACCATGCTGCAGACCTTCTACACTCTCTACGCCTACTACCAGCCA
CCCAAGCAGTCCTAG

Peptide Sequence

PEP ID

Zm00001d051778_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:4:169305662:169310746:-1 gene:Zm00001d051778 transcript:Zm00001d051778_T001 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MTSSVAGTMDIEMPLGNNLWSENMGVDEDNEAITRANKEISAEPTPLDQDSESTEQAEDV
VDLTELKEKVIGAVPFPPQRLDGWMQQWPTIYVVPGDLAAGKTDPYAPATVCFGPLFGPA
RRVTDGMAKLERYKLCCLRKLIVGRSPSPAGTGTRPAEPAVWKPEVHEPMLRSCVDAMTR
LLPRIRASYSIASSMDTIAGDENTVREVKMLLYPNPEVAAVMGSTLAENMLLDGCFILHR
LLKMASRAAGKRYDDDDDDWTQVFGRRGVWALVTRDLLLLHNQIPLFVIKALLKQLKGPA
DIEDDDVLVDGGLQLFSSLHPRRRLQPSPDDSLRLRLRDAHHLLHLFYLSITNIPTQSSA
SASPDKKLPPELTQWVPCAKELEDAGVRFRARKDGTATGFLDIRFSAVGVLEIPPLQLYD
YSEPLFRNLIAFEQTYPDTPGHVTAYAIFMDCLVKTSDDMRLLHSRGILLNHMSGDREAA
TGFFSGICAGAHASADRNYLAPLMDEVVRYQSGRWPQWRAALLRDYFGNPWAVIAFVAAA
IVLALTMLQTFYTLYAYYQPPKQS

Transcript Sequence

Transcript ID

Zm00001d051778_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:169305662:169310746:-1 gene:Zm00001d051778 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

CATTGATGCTACACATGCTCCCTGGCCACTCCTCATTTTCAGGATTATGACGTCCTCTGT
AGCAGGAACAATGGATATTGAGATGCCTTTAGGCAACAACCTGTGGAGCGAGAACATGGG
TGTCGATGAAGATAATGAAGCTATCACCCGAGCCAACAAAGAAATCAGTGCAGAGCCTAC
TCCACTTGATCAGGACAGCGAGTCGACAGAGCAAGCGGAGGATGTCGTGGACTTGACGGA
GCTGAAAGAGAAGGTGATTGGGGCTGTTCCTTTTCCTCCACAGCGCCTCGACGGCTGGAT
GCAGCAATGGCCAACCATCTACGTGGTCCCCGGCGACCTAGCCGCCGGAAAAACGGACCC
CTACGCCCCCGCCACCGTCTGCTTCGGGCCGCTCTTCGGTCCGGCGAGGCGTGTGACGGA
CGGCATGGCGAAGCTGGAGCGCTACAAATTGTGCTGTCTTCGCAAGCTCATCGTGGGGCG
CAGCCCTAGCCCTGCAGGAACTGGAACCCGACCTGCAGAGCCAGCCGTGTGGAAGCCGGA
GGTGCACGAACCGATGCTTCGCAGTTGCGTGGACGCGATGACAAGACTGCTCCCGAGAAT
TCGTGCTTCCTACAGCATCGCCTCATCTATGGACACCATCGCTGGCGACGAAAACACCGT
GCGAGAAGTCAAGATGCTGCTCTACCCCAACCCCGAGGTCGCCGCCGTCATGGGATCAAC
TCTGGCTGAGAACATGCTGCTGGACGGCTGCTTCATCCTCCACCGCCTGCTCAAGATGGC
AAGCAGAGCAGCAGGGAAACGCTACGACGACGACGACGATGACTGGACCCAGGTGTTTGG
TCGGCGCGGGGTATGGGCGCTTGTCACGCGCGACCTGCTGCTGCTCCACAACCAAATCCC
CTTGTTTGTCATCAAGGCTCTGCTGAAGCAGCTTAAGGGTCCAGCTGATATCGAAGACGA
CGACGTCCTCGTGGACGGCGGCCTTCAGCTCTTCAGCTCGCTCCATCCTCGGAGGAGGCT
GCAGCCCTCGCCGGACGACTCGCTCCGCCTCCGCCTCCGCGACGCGCACCACCTCCTGCA
CCTCTTCTACCTGTCCATCACCAACATCCCGACGCAGTCATCAGCCTCAGCGTCGCCGGA
CAAGAAGCTTCCACCGGAGCTCACGCAGTGGGTGCCGTGCGCCAAGGAGCTGGAGGACGC
AGGCGTGAGATTCCGGGCGAGGAAGGACGGCACCGCGACGGGCTTCCTGGACATCAGGTT
CTCCGCCGTCGGCGTCCTGGAGATCCCGCCGCTGCAGCTCTACGACTACAGCGAGCCTCT
GTTCCGGAACCTAATCGCGTTCGAGCAGACCTACCCGGACACGCCGGGCCACGTCACCGC
CTACGCCATCTTCATGGACTGCCTCGTCAAGACATCCGACGACATGCGACTCCTCCACAG
CCGCGGGATACTGCTCAACCACATGAGCGGCGACAGGGAGGCGGCCACGGGGTTCTTCAG
CGGCATCTGCGCCGGAGCGCACGCCTCGGCCGACCGGAACTATCTCGCCCCACTCATGGA
CGAGGTGGTCAGGTACCAGAGTGGAAGGTGGCCCCAGTGGCGTGCCGCGCTGCTGCGGGA
CTACTTCGGAAACCCGTGGGCGGTCATCGCGTTTGTTGCGGCGGCGATCGTGCTCGCGCT
TACCATGCTGCAGACCTTCTACACTCTCTACGCCTACTACCAGCCACCCAAGCAGTCCTA
GCTAGCAACTCGTGATACACTGATTGATTGATCGCTCGCACCATGTGTTTAATTCGTTAC
TGGTATCGTACGTGCTCATACATTGTAACCGAAAAAATAAATAAGAATATATTTGGCAGG
GCTCTGAACTCC