Gene sequences

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SNP Detection
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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d051761_T002
CDS Infomation	cds chromosome:B73_RefGen_v4:4:168959686:168964507:-1 gene:Zm00001d051761 gene_biotype:protein_coding transcript_biotype:protein_coding description:Aspartyl protease APCB1
Sequence	ATGGCGCCGCCTCGTCCCCCTCCTAACCCGGCGGGGGAGCAGCAGCCGCAGCTCCACGGG GTGGTCATCATCACGCTCCCTCCCGCGGACCAGCCCTCCAAGGGCAAGACCGTCACCGCC TTCGCCTACACCAACGACCCCCCGCCCCCTCGCTCGCCCCCGGATCCGGTTATGGGGTAC CCGGCGGCGACGGAGGCTAGGCGGCGGCCGAGGCGGGCGCTCTCGACGCGGCGGGTGGCG ACGGCGGCGCTCGTGCTGGGCGCGCTCGCGGTCGCCGCCTACTATTGCTTCTACTCGGAC GTGGCCGTGCAGTTCCTGGGGATGGAGCAGGAGGAGGAGCAGAGGAACGAGACCAGGTCT TTCCTGCTGCCGCTCTACCCCAAGGCGCGTCAGGGCCGCGCACTGCGCGAGTTCGGGGAC GTCAAGCTCGCCGCCAGGAGGGTCGACGACGGCGGAAGAAAGGCTAGGAACAGGATGGAG GTCGCGAAGGCGGCCACGGCGAGGACCAATTCCACGGCGTTGCTCCCGATCAAGGGCAAT GTCTTCCCCGATGGCCAGTATTACACATCTATCTTTATTGGCAACCCTCCAAGACCATAC TTTCTTGATGTTGATACTGGAAGCGACTTGACGTGGATCCAGTGTGATGCACCATGTACA AACTGCGCAAAGGGACCACATCCTCTATATAAGCCAGCAAAAGAAAAGATTGTCCCTCCT AGAGACTTGTTGTGCCAAGAATTGCAAGGCAACCAGAACTACTGCGAAACCTGCAAGCAG TGTGACTATGAAATTGAATACGCAGACCAAAGCTCCTCTATGGGTGTCCTTGCAAGGGAT GATATGCATATGATCGCAACCAATGGTGGAAGGGAAAAATTAGATTTTGTCTTTGGGTGT GCATATGATCAGCAAGGCCAGCTTTTATCTTCACCAGCTAAGACTGATGGGATCCTTGGA CTTAGCAGTGCGGCGATAAGCTTTCCCAGTCAGCTGGCTAGTCACGGGATTATTGCCAAC GTTTTTGGCCATTGTATCACTAGAGAGCAAGGTGGTGGAGGATATATGTTTCTGGGAGAT GATTATGTACCTAGATGGGGAGTAACATGGACTTCTATTCGAAGTGGTCCAGATAACTTA TATCACACACAAGCCCACCATGTAAAATATGGGGATCAGCAACTCCGGAGGCCTGAACAG GCAGGAAGCACTGTTCAAGTAATTTTTGACAGTGGAAGCTCCTATACGTACCTCCCAAAT GAAATATATGAAAACCTTGTTGCAGCAATCAAATATGCGTCTCCGGGCTTTGTCCAAGAC ACTTCAGATCGGACATTACCTTTATGCTGGAAAGCTGATTTCCCTGTGAGGTATCTGGAA GATGTCAAGCAGTTCTTCGAGCCCTTGAACCTTCACTTCGGGAAGAAATGGCTTTTCATG TCTAAAACATTCACTATTTCTCCTGAGGATTACTTGATTATTAGTGATAAAGGAAATGTC TGTCTTGGGCTTCTCAACGGAACGGAGATTAATCATGGGTCAACTATCATAGTAGGAGAT GTTTCTCTGCGCGGCAAGTTGGTTGTGTACGACAATCAGCGGAAGCAGATTGGATGGGCA GATTCAGACTGCACCAAACCTCAATCACAAAAGGGCTTTCCTTTCTTCCTCTGA

Peptide Sequence

PEP ID	Zm00001d051761_P002
PEP Infomation	pep chromosome:B73_RefGen_v4:4:168959686:168964507:-1 gene:Zm00001d051761 transcript:Zm00001d051761_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Aspartyl protease APCB1
Sequence	MAPPRPPPNPAGEQQPQLHGVVIITLPPADQPSKGKTVTAFAYTNDPPPPRSPPDPVMGY PAATEARRRPRRALSTRRVATAALVLGALAVAAYYCFYSDVAVQFLGMEQEEEQRNETRS FLLPLYPKARQGRALREFGDVKLAARRVDDGGRKARNRMEVAKAATARTNSTALLPIKGN VFPDGQYYTSIFIGNPPRPYFLDVDTGSDLTWIQCDAPCTNCAKGPHPLYKPAKEKIVPP RDLLCQELQGNQNYCETCKQCDYEIEYADQSSSMGVLARDDMHMIATNGGREKLDFVFGC AYDQQGQLLSSPAKTDGILGLSSAAISFPSQLASHGIIANVFGHCITREQGGGGYMFLGD DYVPRWGVTWTSIRSGPDNLYHTQAHHVKYGDQQLRRPEQAGSTVQVIFDSGSSYTYLPN EIYENLVAAIKYASPGFVQDTSDRTLPLCWKADFPVRYLEDVKQFFEPLNLHFGKKWLFM SKTFTISPEDYLIISDKGNVCLGLLNGTEINHGSTIIVGDVSLRGKLVVYDNQRKQIGWA DSDCTKPQSQKGFPFFL

Transcript Sequence

Transcript ID	Zm00001d051761_T002
Transcript Infomation	cdna chromosome:B73_RefGen_v4:4:168959686:168964507:-1 gene:Zm00001d051761 gene_biotype:protein_coding transcript_biotype:protein_coding description:Aspartyl protease APCB1
Sequence	ACTCCCCCTAGTTTCTTTTCCCCCGGTTTTTTCCGTCCTCTCCTCACTCGTGTCCGATGG CTCGCCCCCGCCGCCTCCTCTGACGACGGTCTGACTGACCCCCGCCTCCCCGGAGAGCGG CTCCGCTGTCTCGCCGGATATGGCGCCGCCTCGTCCCCCTCCTAACCCGGCGGGGGAGCA GCAGCCGCAGCTCCACGGGGTGGTCATCATCACGCTCCCTCCCGCGGACCAGCCCTCCAA GGGCAAGACCGTCACCGCCTTCGCCTACACCAACGACCCCCCGCCCCCTCGCTCGCCCCC GGATCCGGTTATGGGGTACCCGGCGGCGACGGAGGCTAGGCGGCGGCCGAGGCGGGCGCT CTCGACGCGGCGGGTGGCGACGGCGGCGCTCGTGCTGGGCGCGCTCGCGGTCGCCGCCTA CTATTGCTTCTACTCGGACGTGGCCGTGCAGTTCCTGGGGATGGAGCAGGAGGAGGAGCA GAGGAACGAGACCAGGTCTTTCCTGCTGCCGCTCTACCCCAAGGCGCGTCAGGGCCGCGC ACTGCGCGAGTTCGGGGACGTCAAGCTCGCCGCCAGGAGGGTCGACGACGGCGGAAGAAA GGCTAGGAACAGGATGGAGGTCGCGAAGGCGGCCACGGCGAGGACCAATTCCACGGCGTT GCTCCCGATCAAGGGCAATGTCTTCCCCGATGGCCAGTATTACACATCTATCTTTATTGG CAACCCTCCAAGACCATACTTTCTTGATGTTGATACTGGAAGCGACTTGACGTGGATCCA GTGTGATGCACCATGTACAAACTGCGCAAAGGGACCACATCCTCTATATAAGCCAGCAAA AGAAAAGATTGTCCCTCCTAGAGACTTGTTGTGCCAAGAATTGCAAGGCAACCAGAACTA CTGCGAAACCTGCAAGCAGTGTGACTATGAAATTGAATACGCAGACCAAAGCTCCTCTAT GGGTGTCCTTGCAAGGGATGATATGCATATGATCGCAACCAATGGTGGAAGGGAAAAATT AGATTTTGTCTTTGGGTGTGCATATGATCAGCAAGGCCAGCTTTTATCTTCACCAGCTAA GACTGATGGGATCCTTGGACTTAGCAGTGCGGCGATAAGCTTTCCCAGTCAGCTGGCTAG TCACGGGATTATTGCCAACGTTTTTGGCCATTGTATCACTAGAGAGCAAGGTGGTGGAGG ATATATGTTTCTGGGAGATGATTATGTACCTAGATGGGGAGTAACATGGACTTCTATTCG AAGTGGTCCAGATAACTTATATCACACACAAGCCCACCATGTAAAATATGGGGATCAGCA ACTCCGGAGGCCTGAACAGGCAGGAAGCACTGTTCAAGTAATTTTTGACAGTGGAAGCTC CTATACGTACCTCCCAAATGAAATATATGAAAACCTTGTTGCAGCAATCAAATATGCGTC TCCGGGCTTTGTCCAAGACACTTCAGATCGGACATTACCTTTATGCTGGAAAGCTGATTT CCCTGTGAGGTATCTGGAAGATGTCAAGCAGTTCTTCGAGCCCTTGAACCTTCACTTCGG GAAGAAATGGCTTTTCATGTCTAAAACATTCACTATTTCTCCTGAGGATTACTTGATTAT TAGTGATAAAGGAAATGTCTGTCTTGGGCTTCTCAACGGAACGGAGATTAATCATGGGTC AACTATCATAGTAGGAGATGTTTCTCTGCGCGGCAAGTTGGTTGTGTACGACAATCAGCG GAAGCAGATTGGATGGGCAGATTCAGACTGCACCAAACCTCAATCACAAAAGGGCTTTCC TTTCTTCCTCTGACGAAGCATCACTCTCTACATAATACATGTGTAAAGCGTAAATAGTGA ACGCCATTGTATTGTAGAATACATTATTAAGTGGAGACTGCCTTTGTGTATGGGTATATC GTTCCATTGGAACTGTCAGAAATCCTCCACTGTGTTGTACCCGTCTGTAATGTGTATACT ATGTTGTTTACTTGTATGATGTATGTACACTATCTCCTCTACATGGAGTTGTCCCCTACA CATGGATTTTTTGTAGATTAGTTACATTATGAACATTTTCGACAGAAGTTGGGTACTTT