Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d051759_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:4:168951185:168955426:1 gene:Zm00001d051759 gene_biotype:protein_coding transcript_biotype:protein_coding description:NHL domain-containing protein
Sequence

ATGGCGACCAAGGGAGGGAACGCAAGGGGCGTTCCGGTGGGGGCGCTGCTGGTGGCCGCG
CTCCTCCTTAGCTCCTTGGTTCCCACCTCCGCGTCCTCGTACCCCGCAAGGGTCGTGAGC
GGGTTCCTCTCCAATGCGGCGTCGGCGGTGGTGAAGCGGCTGTGGTCGCTCAAATCCACC
ACCAAGACAGCGAGCGGGGGAAAGTCTATGGTGAAGTACGAGGGCGGGTACACTGTGGAG
ACGGTCTTCGACGGCAGCAAGCTGGGGATCGAGCCCTACTCCGTGGAGGTCACCCAGAGC
GGCGAACTACTCGTCATGGACTCCATGAACAGCAACATCTACAGGATGGCGCTGCCGCTG
TCCCGATATAGCAGGCCAAAGCTTGTTGCCGGTTCTCCCGAAGGATTTCCTGGTCATGTT
GATGGGAAGCTGCGAGAGGCGAGGATGAACCATCCGAAGGGATTTACAGTGGATGACAAG
GGTAACATCTATGTGGCTGATGCCATGAACATGGCTATTAGAAAGATCAGTGATACAGGG
GTTACAACTATTGCTGGGGGAAAATCAGGCAGAGGAGGGCATGTTGACGGGCCAAGTGAC
GAGGCAAAATTTTCTACTGATTTTGAAGTTCGTTACATTGGCAGTAGCTGCTCGCTTCTG
GTGATTGACAGAGGAAACCAAGCAATCCGGGAGATTCAGCTCCACTTTGATGACTGTGTA
TACCAGTATGAAGCTGGTTTTCCTCTAGGAGTGGCACTACTTCTTGCTGCCGCATTCTTT
GGCTACATGCTTGCACTGCTCCAACGCCGAGTTTTAGGGATGTATTCAAATGGAGATGAG
CAGGAAGACGAGAGTCCAGTGAAAGCTAAACTATCTAGCATCCCACCTCCGTACCAGAAG
CCACTGAAGTCTTCTCTTCGCCCCCCGCTGATTCCAAATGATGACGAACCCGTGAAACAA
GAGGAGGAAGGGCTCTTCACGTCGATTGGCAAACTCGTGGGTGTAGCAAGATCATCAGTC
GCAGAGATCGTCGGCGCCACATTCTCCAGAAAGAAGCGAGTGAACGTTCACCACCACCAG
CTGGGCAGGCCGACCTCGTGGCCAGTGCAAGAGAGCTACGCCATCCCGCGGGACGAGACC
CCGCCGCCACTGGACACGAGGGCGCCGACCCCACGCAAGAGCTACGCCTTCATGTCAAAG
GAGCCGGAGAAGATCCACCACATCCGGCACGGTCGGCCTCAGTCACACGGCTGGACCGGA
GAAGCTGCTGCTCAGCAGCAGCAGCAGCAGCAGGTGCATCACCAGCAGTACCACAACAGG
CAGTACTCGGCCGGGCCGCAGACCTTCTACGAGCCGAGCTGCGATGCGGCGAAGGAGATC
GTCTTCGGAGCCGTGCAGGAGGGGGACACCGGCCGCCGCCGTCCCGTGGAGATCAAGCCC
GTGAACCACGGCGACGTGGCGCCGTTCGAGCTGAACGGGCTGCGGTTCCGCAGCAGTTAC
GGCATGGGCTAA

Peptide Sequence

PEP ID

Zm00001d051759_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:4:168951185:168955426:1 gene:Zm00001d051759 transcript:Zm00001d051759_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:NHL domain-containing protein
Sequence

MATKGGNARGVPVGALLVAALLLSSLVPTSASSYPARVVSGFLSNAASAVVKRLWSLKST
TKTASGGKSMVKYEGGYTVETVFDGSKLGIEPYSVEVTQSGELLVMDSMNSNIYRMALPL
SRYSRPKLVAGSPEGFPGHVDGKLREARMNHPKGFTVDDKGNIYVADAMNMAIRKISDTG
VTTIAGGKSGRGGHVDGPSDEAKFSTDFEVRYIGSSCSLLVIDRGNQAIREIQLHFDDCV
YQYEAGFPLGVALLLAAAFFGYMLALLQRRVLGMYSNGDEQEDESPVKAKLSSIPPPYQK
PLKSSLRPPLIPNDDEPVKQEEEGLFTSIGKLVGVARSSVAEIVGATFSRKKRVNVHHHQ
LGRPTSWPVQESYAIPRDETPPPLDTRAPTPRKSYAFMSKEPEKIHHIRHGRPQSHGWTG
EAAAQQQQQQQVHHQQYHNRQYSAGPQTFYEPSCDAAKEIVFGAVQEGDTGRRRPVEIKP
VNHGDVAPFELNGLRFRSSYGMG

Transcript Sequence

Transcript ID

Zm00001d051759_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:168951185:168955426:1 gene:Zm00001d051759 gene_biotype:protein_coding transcript_biotype:protein_coding description:NHL domain-containing protein
Sequence

GCGCAAGAAAAGCTCGGATTCCTGGTGGTTTCTACCATCCTCCGTCCTCGATCTGAGCGT
TGCCTGCTTCCCTGCCCCCCCGCTCAGATGTCCGCCTTCCGTGTCCTGTAAAATCTTTCG
CCGCGCAGCAATCTCCCCCCACTTGTCGGCTGTCCTGCTGCTGCTGCTGCCAATGGCGAC
CAAGGGAGGGAACGCAAGGGGCGTTCCGGTGGGGGCGCTGCTGGTGGCCGCGCTCCTCCT
TAGCTCCTTGGTTCCCACCTCCGCGTCCTCGTACCCCGCAAGGGTCGTGAGCGGGTTCCT
CTCCAATGCGGCGTCGGCGGTGGTGAAGCGGCTGTGGTCGCTCAAATCCACCACCAAGAC
AGCGAGCGGGGGAAAGTCTATGGTGAAGTACGAGGGCGGGTACACTGTGGAGACGGTCTT
CGACGGCAGCAAGCTGGGGATCGAGCCCTACTCCGTGGAGGTCACCCAGAGCGGCGAACT
ACTCGTCATGGACTCCATGAACAGCAACATCTACAGGATGGCGCTGCCGCTGTCCCGATA
TAGCAGGCCAAAGCTTGTTGCCGGTTCTCCCGAAGGATTTCCTGGTCATGTTGATGGGAA
GCTGCGAGAGGCGAGGATGAACCATCCGAAGGGATTTACAGTGGATGACAAGGGTAACAT
CTATGTGGCTGATGCCATGAACATGGCTATTAGAAAGATCAGTGATACAGGGGTTACAAC
TATTGCTGGGGGAAAATCAGGCAGAGGAGGGCATGTTGACGGGCCAAGTGACGAGGCAAA
ATTTTCTACTGATTTTGAAGTTCGTTACATTGGCAGTAGCTGCTCGCTTCTGGTGATTGA
CAGAGGAAACCAAGCAATCCGGGAGATTCAGCTCCACTTTGATGACTGTGTATACCAGTA
TGAAGCTGGTTTTCCTCTAGGAGTGGCACTACTTCTTGCTGCCGCATTCTTTGGCTACAT
GCTTGCACTGCTCCAACGCCGAGTTTTAGGGATGTATTCAAATGGAGATGAGCAGGAAGA
CGAGAGTCCAGTGAAAGCTAAACTATCTAGCATCCCACCTCCGTACCAGAAGCCACTGAA
GTCTTCTCTTCGCCCCCCGCTGATTCCAAATGATGACGAACCCGTGAAACAAGAGGAGGA
AGGGCTCTTCACGTCGATTGGCAAACTCGTGGGTGTAGCAAGATCATCAGTCGCAGAGAT
CGTCGGCGCCACATTCTCCAGAAAGAAGCGAGTGAACGTTCACCACCACCAGCTGGGCAG
GCCGACCTCGTGGCCAGTGCAAGAGAGCTACGCCATCCCGCGGGACGAGACCCCGCCGCC
ACTGGACACGAGGGCGCCGACCCCACGCAAGAGCTACGCCTTCATGTCAAAGGAGCCGGA
GAAGATCCACCACATCCGGCACGGTCGGCCTCAGTCACACGGCTGGACCGGAGAAGCTGC
TGCTCAGCAGCAGCAGCAGCAGCAGGTGCATCACCAGCAGTACCACAACAGGCAGTACTC
GGCCGGGCCGCAGACCTTCTACGAGCCGAGCTGCGATGCGGCGAAGGAGATCGTCTTCGG
AGCCGTGCAGGAGGGGGACACCGGCCGCCGCCGTCCCGTGGAGATCAAGCCCGTGAACCA
CGGCGACGTGGCGCCGTTCGAGCTGAACGGGCTGCGGTTCCGCAGCAGTTACGGCATGGG
CTAAACCAGTGGCAATAAGCAGTCGAGGAAGAGATCTATTGGTGTAAGGAAAAGAGAGGG
AGCGATATAGAGATATCAGTGCACTCGAGGGGAGCATTTGACAAGTGCAACGGAGAAGTT
GGGAGTTTTGGTAGGAAGAGCTTGGTCATCATCATGGTTATTGGACTCTTTACTGGCGGT
GATATATATAATATATGTATGTATATGCGTTTTGATCTCATTCG