Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d051753_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:4:168866982:168873096:-1 gene:Zm00001d051753 gene_biotype:protein_coding transcript_biotype:protein_coding description:Methionine--tRNA ligase cytoplasmic
Sequence

ATGGCGTCGCCGTCGTCGTCTCCGCCGCCGAAGCTGCCGATCCCCGGCCGCCGCAACATA
CTCATCACCAGCGCCTTACCCTATGTGAATAACGTCCCGCACCTCGGGAACATCATCGGA
TGCGTTCTGAGCGCCGACGTGTTCGCGCGCTACTGCAGGCTACGCGGGTACAACGCGCTC
TACATATGCGGGACGGACGAGTACGGGACGGCCACGGAGACCAAGGCCATGGAGGAGGAG
TGCTCGCCCAAGGAGATCTGTGACAAGTACCATGCTATCCACAGTGAGGTTTACAAGTGG
TTTGACATAGAATTTGACAAATTTGGGCGTACATCCTCTCCTCAACAGACAACAATCTGC
CAAGCAATTTTCCATAAATTGATGGAAAACAATTGGCTATCAGAAAACACCATGCAGCAG
CTTTACTGTGATACATGTCAAAGGTTTTTGGCAGATAGACTTGTAGAAGGAGCATGCCCA
ACAGAAGGGTGTACTAATAAAGCTGCGCGAGGTGATCAATGTGACAATTGCAGCCACATG
TTGAATCCAACTGAACTAATTGATCCAAAGTGTAAGGTCTGTAAGAATACTCCTCATATT
CGTGAAACGGATCACTTGTTCTTGGATCTCCCTCGAATAGAAGACAAGTTGGTAAACTAC
ATTAATGATACTTCAGTAGCTGGTATGTGGAGTCAAAATGCCATTCAAGCTACAAATGCA
TGGTTAAAGGAAGGACTAAAATCACGCTGTATCACAAGAGATCTTAAATGGGGAGTTCCT
GTTCCAATTGAGAAGTATAAAGATAAGGTTTTCTATGTCTGGTTCGATGCACCGATTGGC
TACGTGTCCATCACATCATCTTATACACCTGAGTGGGAGAGGTGGTGGAAGAATCCTGAT
AATGTGGAATTATTTCAGTTCATGGGCAAAGATAATGTGCCATTTCATACGATCATGTTT
CCTTCAACACTACTAGGAACTGGTGAAAATTGGACAATGATGAAGACCATTTGTGTCACC
GAATATCTAAATTACGAAGGAGGAAAATTCTCCAAGAGTAAGGGTATCGGAGTTTTCGGT
AATGATGCCAAGGATACCAATATTCCTCCTGAAGTATGGCGATACTACCTGCTTATGAAT
CGACCTGAGGCATCAGATACACTCTTTACCTGGACTGATTTGCAAGCCAAATTGAACAGC
GAATTGTTAAACAACTTGGGAAATTTCATCAATCGTGTGCTAAGCTTTATTGCAAAACCA
GCTGGGGCTGGATATGATTCAATTATACCCGATGCTCCTGGTGCTGAGTCACATCCATCG
ACAAGTGTCATTGCAGAAAAAGTTAGTAAATCGGTTGAACAATATCTTGATGCAATGGAA
AAGGTAAAGCTGAAACAAGGACTGAAGAGTGCAATGGGCATCTCTACTGATGGAAATCGT
TATTTGCAGGACAGCGAATTTTGGAAACTTTATAAGGACAATCCAGCAAGCTGTGCGATT
GTGATGAAAACTTCAGTTGGTCTTGTATATCTCCTTGCCTGTCTCCTGGAACCTTTCATG
CCTTCCTTTTCAAAAGAAGTGCTACGTCAATTAAACCTGTCCCCAGAAGAAAATATTTCT
TTCAGTGAAGAAAATGGCGAAAGTGTGAAGGCAAAACCCCCTTGGGATCTTGTACCAGCA
GGGCACAAAATAGGGAGGCCTGTACCTCTGTTTGAGGAATTGAAAGATGAAAAGGTGAGT
GAGTATAGGGAAAAATATGCGGGCAGTCAAGCTGAGAGGAACTCGAAAGCAGTGGCTGAC
GCTGAAGCCACAAAAATTGCTAACCAAACCCAAAGCATAGCATTATCTGGAGGCTCAAAA
AAGGAACAAAAGAAACAGTCTGGTAACTCAAAATCAAAGGTGGCTGAGGCAGAATTATCC
GTTGCAAAGTTGGAGATTCGAGTGGGGCTTATCAGAAAAGCGGAGAAGCATCCAGACGCC
GATTCGCTGTATGTAGAGGAAATCGATGTTGGAGAGGAGGCTCCAAGAACGGTGGTTAGT
GGCCTTGTCAAATACATTCCTCTTGAAGAAATACAGAACCGGAAAGTCTGTGTTCTCTGC
AATCTGAAACCGGTGGTGATGCGTGGTATAAAATCGGATGCCATGGTTTTGGCTGCTTCT
AATGAGGACCATACTAGGGTTGAGCTGGTCGAGCCACCAGCGGATGCTGCCGTGGGGGAG
AGGGTGACCTTTGCCGGGCACTCCGGTGAGACCGAGGCTTCTCTCAGTGGCAAGAGCAAG
GTGTGGGAGAAGCTAGCGGCTGACCTGCGTAGCAATGGCGACCTTGTGGCCTGCTACCAA
GATGTCCCCTTCATGACTTCGGCTGGAGTCTGCAAGGTACAGACAATAGCGAATGGGGAA
ATCCGCTAG

Peptide Sequence

PEP ID

Zm00001d051753_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:4:168866982:168873096:-1 gene:Zm00001d051753 transcript:Zm00001d051753_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Methionine--tRNA ligase cytoplasmic
Sequence

MASPSSSPPPKLPIPGRRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAL
YICGTDEYGTATETKAMEEECSPKEICDKYHAIHSEVYKWFDIEFDKFGRTSSPQQTTIC
QAIFHKLMENNWLSENTMQQLYCDTCQRFLADRLVEGACPTEGCTNKAARGDQCDNCSHM
LNPTELIDPKCKVCKNTPHIRETDHLFLDLPRIEDKLVNYINDTSVAGMWSQNAIQATNA
WLKEGLKSRCITRDLKWGVPVPIEKYKDKVFYVWFDAPIGYVSITSSYTPEWERWWKNPD
NVELFQFMGKDNVPFHTIMFPSTLLGTGENWTMMKTICVTEYLNYEGGKFSKSKGIGVFG
NDAKDTNIPPEVWRYYLLMNRPEASDTLFTWTDLQAKLNSELLNNLGNFINRVLSFIAKP
AGAGYDSIIPDAPGAESHPSTSVIAEKVSKSVEQYLDAMEKVKLKQGLKSAMGISTDGNR
YLQDSEFWKLYKDNPASCAIVMKTSVGLVYLLACLLEPFMPSFSKEVLRQLNLSPEENIS
FSEENGESVKAKPPWDLVPAGHKIGRPVPLFEELKDEKVSEYREKYAGSQAERNSKAVAD
AEATKIANQTQSIALSGGSKKEQKKQSGNSKSKVAEAELSVAKLEIRVGLIRKAEKHPDA
DSLYVEEIDVGEEAPRTVVSGLVKYIPLEEIQNRKVCVLCNLKPVVMRGIKSDAMVLAAS
NEDHTRVELVEPPADAAVGERVTFAGHSGETEASLSGKSKVWEKLAADLRSNGDLVACYQ
DVPFMTSAGVCKVQTIANGEIR

Transcript Sequence

Transcript ID

Zm00001d051753_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:168866982:168873096:-1 gene:Zm00001d051753 gene_biotype:protein_coding transcript_biotype:protein_coding description:Methionine--tRNA ligase cytoplasmic
Sequence

GTTGGTACACAGGCACAAAAGCTGTCCGCTTCGAACCCGGGAAGGCGATCGGCGTAAGAA
TCCATTGGAGCGGCAGCGGTTTATATAGAGGCAAAAACCCGCCGGCCGTCAACGTCCGCT
CGACCACCACGAGGGAGTGGGCTGTGACTCGGACAGCACCAAAACCTCGCCCGCCATGGC
GTCGCCGTCGTCGTCTCCGCCGCCGAAGCTGCCGATCCCCGGCCGCCGCAACATACTCAT
CACCAGCGCCTTACCCTATGTGAATAACGTCCCGCACCTCGGGAACATCATCGGATGCGT
TCTGAGCGCCGACGTGTTCGCGCGCTACTGCAGGCTACGCGGGTACAACGCGCTCTACAT
ATGCGGGACGGACGAGTACGGGACGGCCACGGAGACCAAGGCCATGGAGGAGGAGTGCTC
GCCCAAGGAGATCTGTGACAAGTACCATGCTATCCACAGTGAGGTTTACAAGTGGTTTGA
CATAGAATTTGACAAATTTGGGCGTACATCCTCTCCTCAACAGACAACAATCTGCCAAGC
AATTTTCCATAAATTGATGGAAAACAATTGGCTATCAGAAAACACCATGCAGCAGCTTTA
CTGTGATACATGTCAAAGGTTTTTGGCAGATAGACTTGTAGAAGGAGCATGCCCAACAGA
AGGGTGTACTAATAAAGCTGCGCGAGGTGATCAATGTGACAATTGCAGCCACATGTTGAA
TCCAACTGAACTAATTGATCCAAAGTGTAAGGTCTGTAAGAATACTCCTCATATTCGTGA
AACGGATCACTTGTTCTTGGATCTCCCTCGAATAGAAGACAAGTTGGTAAACTACATTAA
TGATACTTCAGTAGCTGGTATGTGGAGTCAAAATGCCATTCAAGCTACAAATGCATGGTT
AAAGGAAGGACTAAAATCACGCTGTATCACAAGAGATCTTAAATGGGGAGTTCCTGTTCC
AATTGAGAAGTATAAAGATAAGGTTTTCTATGTCTGGTTCGATGCACCGATTGGCTACGT
GTCCATCACATCATCTTATACACCTGAGTGGGAGAGGTGGTGGAAGAATCCTGATAATGT
GGAATTATTTCAGTTCATGGGCAAAGATAATGTGCCATTTCATACGATCATGTTTCCTTC
AACACTACTAGGAACTGGTGAAAATTGGACAATGATGAAGACCATTTGTGTCACCGAATA
TCTAAATTACGAAGGAGGAAAATTCTCCAAGAGTAAGGGTATCGGAGTTTTCGGTAATGA
TGCCAAGGATACCAATATTCCTCCTGAAGTATGGCGATACTACCTGCTTATGAATCGACC
TGAGGCATCAGATACACTCTTTACCTGGACTGATTTGCAAGCCAAATTGAACAGCGAATT
GTTAAACAACTTGGGAAATTTCATCAATCGTGTGCTAAGCTTTATTGCAAAACCAGCTGG
GGCTGGATATGATTCAATTATACCCGATGCTCCTGGTGCTGAGTCACATCCATCGACAAG
TGTCATTGCAGAAAAAGTTAGTAAATCGGTTGAACAATATCTTGATGCAATGGAAAAGGT
AAAGCTGAAACAAGGACTGAAGAGTGCAATGGGCATCTCTACTGATGGAAATCGTTATTT
GCAGGACAGCGAATTTTGGAAACTTTATAAGGACAATCCAGCAAGCTGTGCGATTGTGAT
GAAAACTTCAGTTGGTCTTGTATATCTCCTTGCCTGTCTCCTGGAACCTTTCATGCCTTC
CTTTTCAAAAGAAGTGCTACGTCAATTAAACCTGTCCCCAGAAGAAAATATTTCTTTCAG
TGAAGAAAATGGCGAAAGTGTGAAGGCAAAACCCCCTTGGGATCTTGTACCAGCAGGGCA
CAAAATAGGGAGGCCTGTACCTCTGTTTGAGGAATTGAAAGATGAAAAGGTGAGTGAGTA
TAGGGAAAAATATGCGGGCAGTCAAGCTGAGAGGAACTCGAAAGCAGTGGCTGACGCTGA
AGCCACAAAAATTGCTAACCAAACCCAAAGCATAGCATTATCTGGAGGCTCAAAAAAGGA
ACAAAAGAAACAGTCTGGTAACTCAAAATCAAAGGTGGCTGAGGCAGAATTATCCGTTGC
AAAGTTGGAGATTCGAGTGGGGCTTATCAGAAAAGCGGAGAAGCATCCAGACGCCGATTC
GCTGTATGTAGAGGAAATCGATGTTGGAGAGGAGGCTCCAAGAACGGTGGTTAGTGGCCT
TGTCAAATACATTCCTCTTGAAGAAATACAGAACCGGAAAGTCTGTGTTCTCTGCAATCT
GAAACCGGTGGTGATGCGTGGTATAAAATCGGATGCCATGGTTTTGGCTGCTTCTAATGA
GGACCATACTAGGGTTGAGCTGGTCGAGCCACCAGCGGATGCTGCCGTGGGGGAGAGGGT
GACCTTTGCCGGGCACTCCGGTGAGACCGAGGCTTCTCTCAGTGGCAAGAGCAAGGTGTG
GGAGAAGCTAGCGGCTGACCTGCGTAGCAATGGCGACCTTGTGGCCTGCTACCAAGATGT
CCCCTTCATGACTTCGGCTGGAGTCTGCAAGGTACAGACAATAGCGAATGGGGAAATCCG
CTAGATGACGCGATGCCTGAAGGCAGCGTGACGCCGTGGCCTAACTGCCGTCTGATGTTA
CTGAAGTACTAGCTGATTGGTTTTTTGTTGTAAATTTTCTCCTTGGATCTGAATTTTCTT
GTATTGAAAATTGGCAATAGAGAAAACGACGGTGTTTAAT