Plant GARDEN
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d051740_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:4:168581650:168605013:-1 gene:Zm00001d051740 gene_biotype:protein_coding transcript_biotype:protein_coding description:Serine protease SPPA chloroplastic
Sequence

ATGGCGAGGCTTCTCGTGCTCCGCACGGCGCCGTACCGTCACTCTGCCCACCTTTGCGCT
GCCACCCTCCTCGTGCTCCCTCCCTCCCAGCACCGCCACTTCGCCTCCTTCACCTCCCCT
GCCCCCTTTGCCGCGCGCCGCATCCTCCCCTCGCCACTCCGCCTTCCTATCCGCGCAGTG
GAGTCCTCGCCCGGGCCCACCAAAGAGGATCAGGAGCCGTCTCCGGCCGCCAGTGAGGCC
CAGGAGCAGCTAGCGCCCGCGGTGCCTGCGTTCGAGGTCGAAGAGCTTGGGTGGGGGACC
CAGCTCGCCGTCAAGCTCCGCATGCTCGTAGCGCCGCCGTGGCAGCGTGTCCGCAAGGGA
AGCGTCCTCAACATGAAGCTTCGCGGCGAGATATCTGATCAGTTGAAGACACGCTTCTCA
TCAGGGCTGTCGCTACCACAAATCTGTGAGAATTTTGTTAAGGCAGCATATGACCCACGA
ATCTCAGGGATTTATCTGCACATAGAGCCACTGAGATGTGGGTGGGCGAAGGTGGATGAG
ATCAGAAGGCACATTGTGGATTTCAAGAAGTCTGGTAAATTTGTTGTTGGTTATATGCCT
GTTTGTGGGGAGAAAGAATACTATCTTGCTTGCGCGTGTGGTGAGCTATATGCACCTCCA
AGTGCTTATGTTGCCCTGTTTGGCCTAACTGTTCAGCAAACATTTCTCAGAGGTGTCCTT
GAGAAAGTTGGAATTGAACCGGAAATTCAAAGAATTGGTAAATACAAAAGTGCCGGAGAT
CAACTTGCACGCAAGAGCATGTCAAATGAAGTTAGGGAGATGCTGGCAGCACTGCTTGAC
AATATTTATGGAAACTGGCTGGAAACAATATCTTCTACACATGGGAAGAAAAAAGAAGAA
ATTGAGGGATTTATTAATTCAGGGGTCTACCAGGTTGCCAGACTCAAGGAAGAAGGTTGG
GTAACAGATTTACTGTATGATGATGAGGTAATGACATTACTAAAGGAGAGAGTAGGGCAG
AAAGACAAGAAAAGTCTGCGTATGGTTGACTACAGTGAAGATTCTCTTTACAGTAAATAC
TCGCGTGTTAGTAAAAAGACTCTTGGATTACAAGGTGGAGGAGAACAAATTGCTATAATC
AGAGCATCTGGAAGTATAACACGGACTCGTAGCCCATTGAGTGCTCCTAGTTCAGGCATT
GTCGCTGAGCAGTTAATTGAGAAGATACGAACTGTTAGAGAATCAGAAAAGTACAAAGCT
GTTATCCTACGTATAGACAGCCCTGGTGGTGATGCTCTTGCTTCTGATCTGATGTGGAGA
GAAATCCGACTTCTAGCCAACTCTAAACCTGTAGTTGCTTCGATGTCTGATGTTGCTGCA
AGTGGGGGCTACTACATGGCAATGGCTGCACCAGTAATTGTTGCTGAGAAACTGACTCTC
ACAGGGTCAATTGGAGTTGTTACAGGGAAGTTCTGCCTTCAAAAGTTATATGAGAGGATT
GATTTCAATAAAGAAATTATATCCAAGGGTCGATATGCTGAGCTTAATGTTAATGATCAA
CGACCTTTAAGACCAGACGAGGCAGAGCTTTTTGAAAAGTCAGCACAAAATGCTTATGCA
TTGTTTCGTGATAAAGCAGCCATGTCGCGATCAATGAGTGTTGATCAGATGGAGAGTGTT
GCTCAAGGTCGAGTGTGGAGCGGCCATGATGCGTTTTCAAGAGGGTTGGTTGATTCAGTA
GGTGGACTCTCACAAGCTCTTGCTATTGCAAAACAGAAAGCTAATATACCCAAGGATAAG
AAGATCCAGCTAGTTGAAGTTTCAAAGCCCTCTCCATCATTACCGGAGATCTTATCCGGC
ATTGGAGGTTCGTTGCTTGGAGTTGACAGGGCAGTGAAGGGAGTGCTCCAGGACATGACC
TCCCTAAGTGGAGTCCAAGCTAGGATGGATGGAATTCTGTTTGAAAGTTTAGGAGACATG
TCAGGAGAAAACCAGTTATTGTTGCTTGTAAAAGATATCATGAACTATTTTGATTAA

Peptide Sequence

PEP ID

Zm00001d051740_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:4:168581650:168605013:-1 gene:Zm00001d051740 transcript:Zm00001d051740_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:Serine protease SPPA chloroplastic
Sequence

MARLLVLRTAPYRHSAHLCAATLLVLPPSQHRHFASFTSPAPFAARRILPSPLRLPIRAV
ESSPGPTKEDQEPSPAASEAQEQLAPAVPAFEVEELGWGTQLAVKLRMLVAPPWQRVRKG
SVLNMKLRGEISDQLKTRFSSGLSLPQICENFVKAAYDPRISGIYLHIEPLRCGWAKVDE
IRRHIVDFKKSGKFVVGYMPVCGEKEYYLACACGELYAPPSAYVALFGLTVQQTFLRGVL
EKVGIEPEIQRIGKYKSAGDQLARKSMSNEVREMLAALLDNIYGNWLETISSTHGKKKEE
IEGFINSGVYQVARLKEEGWVTDLLYDDEVMTLLKERVGQKDKKSLRMVDYSEDSLYSKY
SRVSKKTLGLQGGGEQIAIIRASGSITRTRSPLSAPSSGIVAEQLIEKIRTVRESEKYKA
VILRIDSPGGDALASDLMWREIRLLANSKPVVASMSDVAASGGYYMAMAAPVIVAEKLTL
TGSIGVVTGKFCLQKLYERIDFNKEIISKGRYAELNVNDQRPLRPDEAELFEKSAQNAYA
LFRDKAAMSRSMSVDQMESVAQGRVWSGHDAFSRGLVDSVGGLSQALAIAKQKANIPKDK
KIQLVEVSKPSPSLPEILSGIGGSLLGVDRAVKGVLQDMTSLSGVQARMDGILFESLGDM
SGENQLLLLVKDIMNYFD

Transcript Sequence

Transcript ID

Zm00001d051740_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:168581650:168605013:-1 gene:Zm00001d051740 gene_biotype:protein_coding transcript_biotype:protein_coding description:Serine protease SPPA chloroplastic
Sequence

ACAAATCAACCGCCCCAGAGGTATCCGCCTCCGGCCTATCCCCTCCACTCCCGACCCCGC
GATCCCCAGACCCGGTCCACCAGACCACCACGCCGCCTCCGCTTTCTTCCCTGCCTCTAC
TAGTCTACTTCAACTGCAGCCATCCGCCATTCCCGAAGCTTCCAGAAGCTCGCCTGCAAT
GGCGAGGCTTCTCGTGCTCCGCACGGCGCCGTACCGTCACTCTGCCCACCTTTGCGCTGC
CACCCTCCTCGTGCTCCCTCCCTCCCAGCACCGCCACTTCGCCTCCTTCACCTCCCCTGC
CCCCTTTGCCGCGCGCCGCATCCTCCCCTCGCCACTCCGCCTTCCTATCCGCGCAGTGGA
GTCCTCGCCCGGGCCCACCAAAGAGGATCAGGAGCCGTCTCCGGCCGCCAGTGAGGCCCA
GGAGCAGCTAGCGCCCGCGGTGCCTGCGTTCGAGGTCGAAGAGCTTGGGTGGGGGACCCA
GCTCGCCGTCAAGCTCCGCATGCTCGTAGCGCCGCCGTGGCAGCGTGTCCGCAAGGGAAG
CGTCCTCAACATGAAGCTTCGCGGCGAGATATCTGATCAGTTGAAGACACGCTTCTCATC
AGGGCTGTCGCTACCACAAATCTGTGAGAATTTTGTTAAGGCAGCATATGACCCACGAAT
CTCAGGGATTTATCTGCACATAGAGCCACTGAGATGTGGGTGGGCGAAGGTGGATGAGAT
CAGAAGGCACATTGTGGATTTCAAGAAGTCTGGTAAATTTGTTGTTGGTTATATGCCTGT
TTGTGGGGAGAAAGAATACTATCTTGCTTGCGCGTGTGGTGAGCTATATGCACCTCCAAG
TGCTTATGTTGCCCTGTTTGGCCTAACTGTTCAGCAAACATTTCTCAGAGGTGTCCTTGA
GAAAGTTGGAATTGAACCGGAAATTCAAAGAATTGGTAAATACAAAAGTGCCGGAGATCA
ACTTGCACGCAAGAGCATGTCAAATGAAGTTAGGGAGATGCTGGCAGCACTGCTTGACAA
TATTTATGGAAACTGGCTGGAAACAATATCTTCTACACATGGGAAGAAAAAAGAAGAAAT
TGAGGGATTTATTAATTCAGGGGTCTACCAGGTTGCCAGACTCAAGGAAGAAGGTTGGGT
AACAGATTTACTGTATGATGATGAGGTAATGACATTACTAAAGGAGAGAGTAGGGCAGAA
AGACAAGAAAAGTCTGCGTATGGTTGACTACAGTGAAGATTCTCTTTACAGTAAATACTC
GCGTGTTAGTAAAAAGACTCTTGGATTACAAGGTGGAGGAGAACAAATTGCTATAATCAG
AGCATCTGGAAGTATAACACGGACTCGTAGCCCATTGAGTGCTCCTAGTTCAGGCATTGT
CGCTGAGCAGTTAATTGAGAAGATACGAACTGTTAGAGAATCAGAAAAGTACAAAGCTGT
TATCCTACGTATAGACAGCCCTGGTGGTGATGCTCTTGCTTCTGATCTGATGTGGAGAGA
AATCCGACTTCTAGCCAACTCTAAACCTGTAGTTGCTTCGATGTCTGATGTTGCTGCAAG
TGGGGGCTACTACATGGCAATGGCTGCACCAGTAATTGTTGCTGAGAAACTGACTCTCAC
AGGGTCAATTGGAGTTGTTACAGGGAAGTTCTGCCTTCAAAAGTTATATGAGAGGATTGA
TTTCAATAAAGAAATTATATCCAAGGGTCGATATGCTGAGCTTAATGTTAATGATCAACG
ACCTTTAAGACCAGACGAGGCAGAGCTTTTTGAAAAGTCAGCACAAAATGCTTATGCATT
GTTTCGTGATAAAGCAGCCATGTCGCGATCAATGAGTGTTGATCAGATGGAGAGTGTTGC
TCAAGGTCGAGTGTGGAGCGGCCATGATGCGTTTTCAAGAGGGTTGGTTGATTCAGTAGG
TGGACTCTCACAAGCTCTTGCTATTGCAAAACAGAAAGCTAATATACCCAAGGATAAGAA
GATCCAGCTAGTTGAAGTTTCAAAGCCCTCTCCATCATTACCGGAGATCTTATCCGGCAT
TGGAGGTTCGTTGCTTGGAGTTGACAGGGCAGTGAAGGGAGTGCTCCAGGACATGACCTC
CCTAAGTGGAGTCCAAGCTAGGATGGATGGAATTCTGTTTGAAAGTTTAGGAGACATGTC
AGGAGAAAACCAGTTATTGTTGCTTGTAAAAGATATCATGAACTATTTTGATTAATTCTA
GCATTCAGGTCCTTATGTTCCAAACATTTGTATTTAGAGATGAGGGGAAATTCATAATGT
CACTACACATCTATCTTGCACAGAAACAGGTAGCTTGTGATTTGTGTAGTTAATTTAGCA
TTGTATATGCCATTTTATTCTTTTGCACTGATGACTAAAAATATCATGATTGATATACTG
GGCAAAAGTAAAAGGAACTCCACCTTTTCTTATGCATGATATTAACT