Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d051704_T003
CDS Infomation	cds chromosome:B73_RefGen_v4:4:167226342:167230563:1 gene:Zm00001d051704 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative U-box domain-containing protein 42
Sequence	ATGTTATCAGTAGCTACCACCAATGGCAGCCAAGGGAACTCCATGGAAACAGTCATGGCA ACAATGGAGCGTCAAACAGCTCGCAGGACCCAGACTAATGTGACACAGATGATGGAATCT ATTTTTGCCAGTGTCAGTCTTGCTAAAGATCTTTCTGCTAGGTGCAAAAGCAGAGCATTG CAAGTCACGGATGATGAGATACAAAGCACAGCACAAGACCTGGAGAATGTCTTGCAGAAT ATATATGATGATCTTTGCAGGATACCAGCTTCAGCATTTGGCAGTAGTGCTTACATGGAT GTGCCTATTAAATCACAGCCAATGAGGGATTGCTGTAAGGCTGATATACCCATAAATGTA ATGGGCAACAGACCTAGGACAAGGTCTCTCCGAGATAATGATACTCCGAGGCTGGTGGAC TTTCTCAAGGGAATGTACCATGAATCGCATGAATTTAGTGGGCAGATGTTCAACACTCTC CTAGAGGTTACAGAATACATTGAGCCACTGTATGATGCGTTCATCTGTGCACTAACAAAT GAGATAATGACTGATCCTGTGATGATTGAGAGTGGTGTGACATGTGACAGGAGAGCCATA GAGGAGTATATTGAGAGGTTTGCAGACAGTTCTGAACCTGTCTATTGTCCTGTCACAAAG ATGACAATGCAAAGTAAGACAATGGTGAGCAATGCTTCCCTGAAGTGTGTAATTGAAGAA TGGACAATGAGAAATGAGATCATGCGTGTCAGGATTGCTCGTACTGCCCTTTCCCTGTCA ACTACAGACACAATGGTGCTTGAAGCTATACATGAGCTAAAGTTGCTGGCCAAGTTGAGG GTGAAGAACAGGGAGCTGATGCACAAGATCGGAGTCACCAAGTTCTTAGCACGGTTGTTG GACAACCACAATGACCAGATTCAGTTTGAAGCTCTCAAGCTTTTGTGCTTGTTAGCTCAA GATGAAGAAGGAAAGGATATCATCGGAAAAACTAAGGCCATTGCCAGGACAATAAAATTA CTGTCAAGTAATTCTACTGATGAAAGGCATGCAGCCATCTCTTTCTTGCTGGAGCTTTCG GAGTCACAGTTACTGTTGGATAATATTGGATCAACACCTGGAAGCATTCTGATCCTCACT ACAATGAAGCTTAACAGTTCAGATGATCCAATTGCTGCTGCAAGAGCTGGAGCAGTCCTT AAGAACCTGGAGAAGTGTCCGAAGAACATCAAGTACATGGCTGAAAGTGGCTACTTAGAA CCTCTTCAGAGTCATCTAGTGGAAGGCTCAGAAGAGATACAGATGGAGATGGTCGGCTAT CTATGTGAACTAGTCCAAGAGCAGGAGCTCACCATTGATATCAATAGAAGCACCTCGGAA ATCCTCGTCAAGATGGTGCGTGGCTGCAACCCCATGGTCCGCAAGGCAGCGTTGAATGTC CTTGCCCAGCTTTCTTTGCACCGCCCCAACAACAAGATGCTTGTCGACACAGGCGCTGTC CCTGTCATGATTGAGGAACTGTTCATCAGAAAGGTCGATGACGAGCCTGTGAACTCCATG GCCAATGCCGCCACTGTCCTTGCTAACATTGTCGAGTCAGGCATTGACCCAGACACCACG GTGGTGAACAAGGAAGGCCATGTCCTCACCTCGAAGTACTCCATCTACAACTTTGTGCAC ATGCTCAAGTGCTTCATGCCGGACGACCTCAACCTCAGCGTCCTCCGCATCCTTCTAGCG CTCACCGCGCTCGCCAAGCCACTAGACACTGTGGTCTCGGTCATCAGGGAGAACTACCGC GGCCATTCTATCATCGAGCTCATGGGCTCACCAACGGAGGTGCTCAGCCTCGCCGCGACA AGGCTGCTCATCACCCTGTCTCCACACATTGGACACACCATCGTAGAGAGGCTCTGCAAG ACACAAGGACAGCCACACAAGCTGGTCAAAAGCATCAGCCATGCTGGGCGCATCACAGAA CGGCAAGCTACGTTGGCCACGCTCCTCGCGAAGCTACCTTACCGGAACACCTCCCTCAAC ATCGCGCTTGTGAAGGATGGTGCCGTGCCAGCCATGCTGAGGGCGATAAAAGAGGTGGAG AACGGCGCTGGTAGATCAAGCAGGCAGGCTGTGCCATACATGGAGGGTCTCGTTGGCACG CTCGTGCGGCTCACTGCGACTCTGTTCAGCCCAGAAGTGTTGAAGGCGGCCATGGACCAC AATCTGGCCTCGGTGCTCACTGAGCTACTCGATGGAGCAGCCGGAAGCGACGAGGTGCAA CGCCTTGCTGCAGTGGGGCTCGAGAACCTTAGTTACCTATCCATCAAACTGTCCCGGCCA CCGCCCGATGAGCTGCAGTTCAAGAAGAAGAATACCCTACTGAAGCTCCTGAAGGACTCA AAGGCGCACAGCAACAAGAAGACCTCACTCCACCAGGTTTGCGTTTGCCCGGTGCACCGA GGAGTCTGTTCTCCAGCGGCGACATTCTGCCTCCTCGAGGCTGGCGCCTTGGAGGGCCTC TTGGGATGCCTCGAGAACGACAACATCCGGGTGGTGGAGGCTGCCCTCCGAGCGCTGTGC ACTCTCCTCGACGAGAGGGTGGACGTGGAGAAGAGCGTAGCGGCCCTTGCTGAGCTCGAC GTTGCTCGGCGCGTGCTTGCTGCGCTGAGGCAGCACCGGCAAAACGTGCTGTGGCAGAAG TGCTTCTGCGTGGTGGAGAAGCTCCTGGACCACGGCGACGACCGATGCGTGAGGGAGGTG ACAGGCGATCGGATGCTGCCCACGGCGTTAGTGAGCGCCTTCCACAGAGGGGACGAGAGC ACTAAGCAGACGGCCGAGAGCATCCTCCGGAGACTACACAAGATGCCTGATTACTCTGCA ACCTATGTATCCATGGAGTTCTAG

Peptide Sequence

PEP ID	Zm00001d051704_P003
PEP Infomation	pep chromosome:B73_RefGen_v4:4:167226342:167230563:1 gene:Zm00001d051704 transcript:Zm00001d051704_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative U-box domain-containing protein 42
Sequence	MLSVATTNGSQGNSMETVMATMERQTARRTQTNVTQMMESIFASVSLAKDLSARCKSRAL QVTDDEIQSTAQDLENVLQNIYDDLCRIPASAFGSSAYMDVPIKSQPMRDCCKADIPINV MGNRPRTRSLRDNDTPRLVDFLKGMYHESHEFSGQMFNTLLEVTEYIEPLYDAFICALTN EIMTDPVMIESGVTCDRRAIEEYIERFADSSEPVYCPVTKMTMQSKTMVSNASLKCVIEE WTMRNEIMRVRIARTALSLSTTDTMVLEAIHELKLLAKLRVKNRELMHKIGVTKFLARLL DNHNDQIQFEALKLLCLLAQDEEGKDIIGKTKAIARTIKLLSSNSTDERHAAISFLLELS ESQLLLDNIGSTPGSILILTTMKLNSSDDPIAAARAGAVLKNLEKCPKNIKYMAESGYLE PLQSHLVEGSEEIQMEMVGYLCELVQEQELTIDINRSTSEILVKMVRGCNPMVRKAALNV LAQLSLHRPNNKMLVDTGAVPVMIEELFIRKVDDEPVNSMANAATVLANIVESGIDPDTT VVNKEGHVLTSKYSIYNFVHMLKCFMPDDLNLSVLRILLALTALAKPLDTVVSVIRENYR GHSIIELMGSPTEVLSLAATRLLITLSPHIGHTIVERLCKTQGQPHKLVKSISHAGRITE RQATLATLLAKLPYRNTSLNIALVKDGAVPAMLRAIKEVENGAGRSSRQAVPYMEGLVGT LVRLTATLFSPEVLKAAMDHNLASVLTELLDGAAGSDEVQRLAAVGLENLSYLSIKLSRP PPDELQFKKKNTLLKLLKDSKAHSNKKTSLHQVCVCPVHRGVCSPAATFCLLEAGALEGL LGCLENDNIRVVEAALRALCTLLDERVDVEKSVAALAELDVARRVLAALRQHRQNVLWQK CFCVVEKLLDHGDDRCVREVTGDRMLPTALVSAFHRGDESTKQTAESILRRLHKMPDYSA TYVSMEF

Transcript Sequence

Transcript ID	Zm00001d051704_T003
Transcript Infomation	cdna chromosome:B73_RefGen_v4:4:167226342:167230563:1 gene:Zm00001d051704 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative U-box domain-containing protein 42
Sequence	GCACAGAGGAAACCAAGGCCTGGTTATTTGTGGAGCAATACTCCTCCTGTAACTCTTCTG CACGTGGTACCACTGTAGAGTTCAGATATTTGAGGTCTTTGCTAGAACAATACAGGTACC CTTTTTGTTTTAATTATCTTTATTGTGTTGTTTAGAGGGTTAGGCTTTGTAGAAGAACAC TGCAGCAAGTTCTTCTTAGGAACAAGGTAATAAATTTAAATTTTGTTCCAGAAGAAAGAC TTTTATATTTGCTTCAGCTTAATGGTTGTTTGATTTTTGTGGTTCTTAGTTTAATAATTT TGGTACAAATAAGCAAAAGTATGATAATGCTGTTAAATCTTATCTTCTACTCCATGCCCT TATGATTATTTTTCAGCTCTCTTATGATGATTCAATTTCACTATCAATGCTTGTTTGAAA AACATTTACATTTCTCTCTTTCAAGTTTTGCTGCTTTTGTGTGGATGTAGTCATGTTATC AGTAGCTACCACCAATGGCAGCCAAGGGAACTCCATGGAAACAGTCATGGCAACAATGGA GCGTCAAACAGCTCGCAGGACCCAGACTAATGTGACACAGATGATGGAATCTATTTTTGC CAGTGTCAGTCTTGCTAAAGATCTTTCTGCTAGGTGCAAAAGCAGAGCATTGCAAGTCAC GGATGATGAGATACAAAGCACAGCACAAGACCTGGAGAATGTCTTGCAGAATATATATGA TGATCTTTGCAGGATACCAGCTTCAGCATTTGGCAGTAGTGCTTACATGGATGTGCCTAT TAAATCACAGCCAATGAGGGATTGCTGTAAGGCTGATATACCCATAAATGTAATGGGCAA CAGACCTAGGACAAGGTCTCTCCGAGATAATGATACTCCGAGGCTGGTGGACTTTCTCAA GGGAATGTACCATGAATCGCATGAATTTAGTGGGCAGATGTTCAACACTCTCCTAGAGGT TACAGAATACATTGAGCCACTGTATGATGCGTTCATCTGTGCACTAACAAATGAGATAAT GACTGATCCTGTGATGATTGAGAGTGGTGTGACATGTGACAGGAGAGCCATAGAGGAGTA TATTGAGAGGTTTGCAGACAGTTCTGAACCTGTCTATTGTCCTGTCACAAAGATGACAAT GCAAAGTAAGACAATGGTGAGCAATGCTTCCCTGAAGTGTGTAATTGAAGAATGGACAAT GAGAAATGAGATCATGCGTGTCAGGATTGCTCGTACTGCCCTTTCCCTGTCAACTACAGA CACAATGGTGCTTGAAGCTATACATGAGCTAAAGTTGCTGGCCAAGTTGAGGGTGAAGAA CAGGGAGCTGATGCACAAGATCGGAGTCACCAAGTTCTTAGCACGGTTGTTGGACAACCA CAATGACCAGATTCAGTTTGAAGCTCTCAAGCTTTTGTGCTTGTTAGCTCAAGATGAAGA AGGAAAGGATATCATCGGAAAAACTAAGGCCATTGCCAGGACAATAAAATTACTGTCAAG TAATTCTACTGATGAAAGGCATGCAGCCATCTCTTTCTTGCTGGAGCTTTCGGAGTCACA GTTACTGTTGGATAATATTGGATCAACACCTGGAAGCATTCTGATCCTCACTACAATGAA GCTTAACAGTTCAGATGATCCAATTGCTGCTGCAAGAGCTGGAGCAGTCCTTAAGAACCT GGAGAAGTGTCCGAAGAACATCAAGTACATGGCTGAAAGTGGCTACTTAGAACCTCTTCA GAGTCATCTAGTGGAAGGCTCAGAAGAGATACAGATGGAGATGGTCGGCTATCTATGTGA ACTAGTCCAAGAGCAGGAGCTCACCATTGATATCAATAGAAGCACCTCGGAAATCCTCGT CAAGATGGTGCGTGGCTGCAACCCCATGGTCCGCAAGGCAGCGTTGAATGTCCTTGCCCA GCTTTCTTTGCACCGCCCCAACAACAAGATGCTTGTCGACACAGGCGCTGTCCCTGTCAT GATTGAGGAACTGTTCATCAGAAAGGTCGATGACGAGCCTGTGAACTCCATGGCCAATGC CGCCACTGTCCTTGCTAACATTGTCGAGTCAGGCATTGACCCAGACACCACGGTGGTGAA CAAGGAAGGCCATGTCCTCACCTCGAAGTACTCCATCTACAACTTTGTGCACATGCTCAA GTGCTTCATGCCGGACGACCTCAACCTCAGCGTCCTCCGCATCCTTCTAGCGCTCACCGC GCTCGCCAAGCCACTAGACACTGTGGTCTCGGTCATCAGGGAGAACTACCGCGGCCATTC TATCATCGAGCTCATGGGCTCACCAACGGAGGTGCTCAGCCTCGCCGCGACAAGGCTGCT CATCACCCTGTCTCCACACATTGGACACACCATCGTAGAGAGGCTCTGCAAGACACAAGG ACAGCCACACAAGCTGGTCAAAAGCATCAGCCATGCTGGGCGCATCACAGAACGGCAAGC TACGTTGGCCACGCTCCTCGCGAAGCTACCTTACCGGAACACCTCCCTCAACATCGCGCT TGTGAAGGATGGTGCCGTGCCAGCCATGCTGAGGGCGATAAAAGAGGTGGAGAACGGCGC TGGTAGATCAAGCAGGCAGGCTGTGCCATACATGGAGGGTCTCGTTGGCACGCTCGTGCG GCTCACTGCGACTCTGTTCAGCCCAGAAGTGTTGAAGGCGGCCATGGACCACAATCTGGC CTCGGTGCTCACTGAGCTACTCGATGGAGCAGCCGGAAGCGACGAGGTGCAACGCCTTGC TGCAGTGGGGCTCGAGAACCTTAGTTACCTATCCATCAAACTGTCCCGGCCACCGCCCGA TGAGCTGCAGTTCAAGAAGAAGAATACCCTACTGAAGCTCCTGAAGGACTCAAAGGCGCA CAGCAACAAGAAGACCTCACTCCACCAGGTTTGCGTTTGCCCGGTGCACCGAGGAGTCTG TTCTCCAGCGGCGACATTCTGCCTCCTCGAGGCTGGCGCCTTGGAGGGCCTCTTGGGATG CCTCGAGAACGACAACATCCGGGTGGTGGAGGCTGCCCTCCGAGCGCTGTGCACTCTCCT CGACGAGAGGGTGGACGTGGAGAAGAGCGTAGCGGCCCTTGCTGAGCTCGACGTTGCTCG GCGCGTGCTTGCTGCGCTGAGGCAGCACCGGCAAAACGTGCTGTGGCAGAAGTGCTTCTG CGTGGTGGAGAAGCTCCTGGACCACGGCGACGACCGATGCGTGAGGGAGGTGACAGGCGA TCGGATGCTGCCCACGGCGTTAGTGAGCGCCTTCCACAGAGGGGACGAGAGCACTAAGCA GACGGCCGAGAGCATCCTCCGGAGACTACACAAGATGCCTGATTACTCTGCAACCTATGT ATCCATGGAGTTCTAGTCGTTGGAATCTAAACAGTATCGAAGTGTGTGCATACACTACTT TTTTTTACTTGCTTGTTTGAACAAAATTACAGAACGGATCATTTTTGTGCAGCACTATGA TTTTCACAACCTGAATGTTTTAACAAGTGAATGGATATTGTGAAACTCCTATGTTGCT