Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d051600_T029
CDS Infomation

cds chromosome:B73_RefGen_v4:4:164094290:164100568:-1 gene:Zm00001d051600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein CROWDED NUCLEI 1
Sequence

ATGGGGCTTCTTTTGATTGAAAAGAAAGAATGGGCAGCAAAATTTGAAGAAATCAGTGAA
GTGCTGACACAGAAAGAGGAGATACTGAAGAGGGAGCAGGCGGCACATCTGAATGCTATA
TCAGAGTATGAAAGGCGGGAGGAGAACATGCGGAAAGCACTAGGTGTTGAGAAGCAATGT
GTCGCTGATCTTGAAAAAGCCTTGCGTGATATACGAGCAGAGATAGCTGAGGTTAAATTT
ACATCTGAGAAAAAGATAACAGATGCTCAGTCTCTTGAGGCTAGTTTGGAGGAAAAATCC
TTGGAGATCGAGGGAAAACTTCATGCTGCAGATGCCAAACTTGCAGAGGCAAACCGCAAG
AAGTCTCAAGCTGACCGTGATTTAGAAGAGGCGGAAGCTCGTCAACGTAGACTGGAGAAG
GAGAAACTGTATTTTGAGACAGAGCGGAAGGCCCGAGAAAAGCAACTTAAGGAGCAGGAG
GAATCACTGCAGGAATGGGAGAAAAAGCTGAAGGAAAGTCAGAATAGACTTAATGAGTTG
CAGAGATCTATAAATGAGCGAGAGGAGAGAGCAAATAAGAATGATCAACTTTTCAAGATA
AAACAGGACGAACTGGAGGAGGCACGAAGGACAGTGGAGGCCGCTAAAGTTACTCTGAAA
GTCAAAGAGGATGATATTAACAAAAGACTAAATGAATTACATTTACAGGAAAAGGATGCT
GACTCAAAGCGCAGTGCATTGGAAGAGCAGGGGAAAAAATTGGATGAGAGAGAGGCAAAG
GTCACTAATAGAGAAAAGGAGGGGCTCCAGAAGCTTCTTGAGGATCATCAGGTGGAGCTT
GAATCCAAAAGACGGGATTTTGAATTAGAATTAGAGAGGGAAAGGAAATCTTTTGATCAA
AATATGACACAGAAGCAAGCGGATTTATTGAAAAGGGAGAAAGATGTTAAATCTTTGGAG
GCTAAACTTTCTAAAAGTGAGCAGGCATTGAATGATAAGAAGAAATCAATGGAAAACTTG
CAGAATGATCTTGATGCCAAATCTAAGGCTCTGAAGAGTTGGGATGAATCATTGAAAAAT
GACGAGAAAAGGTTACTGAAAGAAAAGCAGCAAATGGATCATGAAAGAGAACAATTGGAG
ACATACAAATTGGAGCTTGAAAAGATCAAATCAGCATTAGAAGCTGAGAAGGAAAAAATA
TCAGAAGAGCAGAATAATCTGAAACTCACAGCGCAAGAGAGGCAGGAGCATAGCTTGTTG
ATAGCAAAACTTAAGAAGGAGATTGAGGAATACAGAATGCGAAGCAACTCCCTATCTGAG
GAAATGGAGGATTTAAGGAAGCAACGGCAGAAATTTGAAGAAGAGTGGGAACAACTAGAC
GAAAAGAGAGCCCTCCTTGTAGAGGAGGACAAAAGGTTGAACATTGAGAGGATGAATTTA
GAACGGTGGCGTGACAACGAAGAAAAAAGGTTAAATGATATGAAACTCAAAATGGATGAA
GAATACAAGCAGCAGCTGGAGAGTCTTGAGCGCAAGGAAAAGGCTTTGAGTGATGATATG
AAGCACAAGCAAATGGAAAATGATGAATTTCTGAAGGGAGAACGTGCTGATGTTCAACGT
AAATTGCAACTCAAACGGCATGAATTGGAGATGGAGATGGAGCAAAAACAAGCCACGAAG
GAGAAGGAACTGGAAGAAAAGGAAAATGAGTTAAATAAGAAAATAGATTTTGTGGAAAAT
AAACTCCGACATGCAATTGAGTTGAATGAGTCCAAGATTGAGAAGTTATTATTGGAGAAA
AGGGAGGTGCAGATGGAAAGAGAATTACTGCTGGAGGAAAGAAAGAAAACGGAGACTGAC
AAGGCAGATATTAGAAGGGATATTGAGAGTCTGCACTCATTGAGCAAGAGTTTGAAGGAA
CGTCGAGAGGCATATAACAGGGACAGGAGCAGACTCATCGAACTATTTGAAAAGTACAAG
GCGTGCAAAAACTGTGGGATTTCTATTTTTGAGGGATTGGATTCTCTGCTGCTTAAAGAC
AGTGCTGAAATTGAGCATCCAAGTTTGGCTGTTGAGGGAGATGATCATGCCTTGACCACC
GATACATCAGGTCCAGATACAGGAACCCTTGTTAATTCAGGTGGTCGTTTTTCTTTGTTA
CAGAAGTGTTCAAGGCTTTTCAAGTTCTCCCCTAGAAAAAAGGGTGAGCAGTCATCAGAA
CAACCATCAGAGAGGAATATATCTTTTGGTGCAAGACTCGAGGAAGCAACACAGAGCGAT
GGAGATTATGTGCCAACTCCTGTCTATGAGATAGCCCACGATTCTTTCAATGCAGAGGAT
GAGCTCCCTTCTGACGGTGAAACCAGGGAGAATGAAGAGTCTGAAAGGCATGACATAGCT
GATAATGCCCAGATGGAGTCTTCTGTTGGTGTAGCAGATAACAGTATAGATATTCTCGGT
ACTAAGTCATTTGATGGTGCTAACGACATGGCAGTTGAAGCAACTATTGTCTCTGTTGAT
CAAAATGGCGAGGACTCTGTAGTTCCTGCTGAAGCAGGTGTAGAGCCTGAAACATCAGAG
CAAGGTCGGCGCCAGCAAAACCAGAGAGGCAGAAGAAAAGGTGGTATGAAAAGAACACGG
TCTGTTAATGCTGTAGTTGAAGATGCTAAGATGATACTTGGCGAGGTTTTTGAGGAGAAG
ACTGATGATCAGGGAGATACAGTCAAGGTGGGTGCTACACGAAAGCGGCGGTTTGCTGGA
GCTACAATAAGTGAACAAGATGAAGAAGGGAGCGAAGCACATTCAGAAAGTGTTTCACTT
GGAGGGCAGCGCCGTAAGAGGCGGCAAACTGCTGGGGCAGTGACAGATGCCCCAGGAGAA
AGACGTTACAATTTGAGACACAGTAGAGCTGCAAATGCTGGCGCTGCAACAGCCCAAGCA
GACAAAAAAAAATCTTCAAAAGCAAGAAATAAACATACAGTAGAAGCTTCTGCTGATGAC
ACCGAAGGAACATCAAAGGTTGTTGAGGAACCTGCCCCTGAGAGCAAGAGGGTATCTGAA
TCTGCAGACTACGATGCATCCCAGTTGCATGAGTTTTCCCAGGTTGAAGTTGGTGATGCC
CATGCTGTAGACGGTGAGGGTGCTGGTGAGGAAGATGGTGATATTTTGGATGGCCAAGAT
GCACTGCCTGATGTGCCAATGACACCTTCTGGAAGCGAGTTTGGAGCGGAACAGGAAGAT
GAGGACGATGATGATTCAGAGAGGCGAAACCAATCAATCAGCAAGAAGCTATGGTCATTC
TTCACTACATGA

Peptide Sequence

PEP ID

Zm00001d051600_P029
PEP Infomation

pep chromosome:B73_RefGen_v4:4:164094290:164100568:-1 gene:Zm00001d051600 transcript:Zm00001d051600_T029 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein CROWDED NUCLEI 1
Sequence

MGLLLIEKKEWAAKFEEISEVLTQKEEILKREQAAHLNAISEYERREENMRKALGVEKQC
VADLEKALRDIRAEIAEVKFTSEKKITDAQSLEASLEEKSLEIEGKLHAADAKLAEANRK
KSQADRDLEEAEARQRRLEKEKLYFETERKAREKQLKEQEESLQEWEKKLKESQNRLNEL
QRSINEREERANKNDQLFKIKQDELEEARRTVEAAKVTLKVKEDDINKRLNELHLQEKDA
DSKRSALEEQGKKLDEREAKVTNREKEGLQKLLEDHQVELESKRRDFELELERERKSFDQ
NMTQKQADLLKREKDVKSLEAKLSKSEQALNDKKKSMENLQNDLDAKSKALKSWDESLKN
DEKRLLKEKQQMDHEREQLETYKLELEKIKSALEAEKEKISEEQNNLKLTAQERQEHSLL
IAKLKKEIEEYRMRSNSLSEEMEDLRKQRQKFEEEWEQLDEKRALLVEEDKRLNIERMNL
ERWRDNEEKRLNDMKLKMDEEYKQQLESLERKEKALSDDMKHKQMENDEFLKGERADVQR
KLQLKRHELEMEMEQKQATKEKELEEKENELNKKIDFVENKLRHAIELNESKIEKLLLEK
REVQMERELLLEERKKTETDKADIRRDIESLHSLSKSLKERREAYNRDRSRLIELFEKYK
ACKNCGISIFEGLDSLLLKDSAEIEHPSLAVEGDDHALTTDTSGPDTGTLVNSGGRFSLL
QKCSRLFKFSPRKKGEQSSEQPSERNISFGARLEEATQSDGDYVPTPVYEIAHDSFNAED
ELPSDGETRENEESERHDIADNAQMESSVGVADNSIDILGTKSFDGANDMAVEATIVSVD
QNGEDSVVPAEAGVEPETSEQGRRQQNQRGRRKGGMKRTRSVNAVVEDAKMILGEVFEEK
TDDQGDTVKVGATRKRRFAGATISEQDEEGSEAHSESVSLGGQRRKRRQTAGAVTDAPGE
RRYNLRHSRAANAGAATAQADKKKSSKARNKHTVEASADDTEGTSKVVEEPAPESKRVSE
SADYDASQLHEFSQVEVGDAHAVDGEGAGEEDGDILDGQDALPDVPMTPSGSEFGAEQED
EDDDDSERRNQSISKKLWSFFTT

Transcript Sequence

Transcript ID

Zm00001d051600_T029
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:164094290:164100568:-1 gene:Zm00001d051600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein CROWDED NUCLEI 1
Sequence

GCCGCGTCCGGCCGCCGGTAGCGGGCCGGTCACTTACCGGTGAGGGCTCACCCCGCAGTT
GCATGAATATCAGTACAATATGGGGCTTCTTTTGATTGAAAAGAAAGAATGGGCAGCAAA
ATTTGAAGAAATCAGTGAAGTGCTGACACAGAAAGAGGAGATACTGAAGAGGGAGCAGGC
GGCACATCTGAATGCTATATCAGAGTATGAAAGGCGGGAGGAGAACATGCGGAAAGCACT
AGGTGTTGAGAAGCAATGTGTCGCTGATCTTGAAAAAGCCTTGCGTGATATACGAGCAGA
GATAGCTGAGGTTAAATTTACATCTGAGAAAAAGATAACAGATGCTCAGTCTCTTGAGGC
TAGTTTGGAGGAAAAATCCTTGGAGATCGAGGGAAAACTTCATGCTGCAGATGCCAAACT
TGCAGAGGCAAACCGCAAGAAGTCTCAAGCTGACCGTGATTTAGAAGAGGCGGAAGCTCG
TCAACGTAGACTGGAGAAGGAGAAACTGTATTTTGAGACAGAGCGGAAGGCCCGAGAAAA
GCAACTTAAGGAGCAGGAGGAATCACTGCAGGAATGGGAGAAAAAGCTGAAGGAAAGTCA
GAATAGACTTAATGAGTTGCAGAGATCTATAAATGAGCGAGAGGAGAGAGCAAATAAGAA
TGATCAACTTTTCAAGATAAAACAGGACGAACTGGAGGAGGCACGAAGGACAGTGGAGGC
CGCTAAAGTTACTCTGAAAGTCAAAGAGGATGATATTAACAAAAGACTAAATGAATTACA
TTTACAGGAAAAGGATGCTGACTCAAAGCGCAGTGCATTGGAAGAGCAGGGGAAAAAATT
GGATGAGAGAGAGGCAAAGGTCACTAATAGAGAAAAGGAGGGGCTCCAGAAGCTTCTTGA
GGATCATCAGGTGGAGCTTGAATCCAAAAGACGGGATTTTGAATTAGAATTAGAGAGGGA
AAGGAAATCTTTTGATCAAAATATGACACAGAAGCAAGCGGATTTATTGAAAAGGGAGAA
AGATGTTAAATCTTTGGAGGCTAAACTTTCTAAAAGTGAGCAGGCATTGAATGATAAGAA
GAAATCAATGGAAAACTTGCAGAATGATCTTGATGCCAAATCTAAGGCTCTGAAGAGTTG
GGATGAATCATTGAAAAATGACGAGAAAAGGTTACTGAAAGAAAAGCAGCAAATGGATCA
TGAAAGAGAACAATTGGAGACATACAAATTGGAGCTTGAAAAGATCAAATCAGCATTAGA
AGCTGAGAAGGAAAAAATATCAGAAGAGCAGAATAATCTGAAACTCACAGCGCAAGAGAG
GCAGGAGCATAGCTTGTTGATAGCAAAACTTAAGAAGGAGATTGAGGAATACAGAATGCG
AAGCAACTCCCTATCTGAGGAAATGGAGGATTTAAGGAAGCAACGGCAGAAATTTGAAGA
AGAGTGGGAACAACTAGACGAAAAGAGAGCCCTCCTTGTAGAGGAGGACAAAAGGTTGAA
CATTGAGAGGATGAATTTAGAACGGTGGCGTGACAACGAAGAAAAAAGGTTAAATGATAT
GAAACTCAAAATGGATGAAGAATACAAGCAGCAGCTGGAGAGTCTTGAGCGCAAGGAAAA
GGCTTTGAGTGATGATATGAAGCACAAGCAAATGGAAAATGATGAATTTCTGAAGGGAGA
ACGTGCTGATGTTCAACGTAAATTGCAACTCAAACGGCATGAATTGGAGATGGAGATGGA
GCAAAAACAAGCCACGAAGGAGAAGGAACTGGAAGAAAAGGAAAATGAGTTAAATAAGAA
AATAGATTTTGTGGAAAATAAACTCCGACATGCAATTGAGTTGAATGAGTCCAAGATTGA
GAAGTTATTATTGGAGAAAAGGGAGGTGCAGATGGAAAGAGAATTACTGCTGGAGGAAAG
AAAGAAAACGGAGACTGACAAGGCAGATATTAGAAGGGATATTGAGAGTCTGCACTCATT
GAGCAAGAGTTTGAAGGAACGTCGAGAGGCATATAACAGGGACAGGAGCAGACTCATCGA
ACTATTTGAAAAGTACAAGGCGTGCAAAAACTGTGGGATTTCTATTTTTGAGGGATTGGA
TTCTCTGCTGCTTAAAGACAGTGCTGAAATTGAGCATCCAAGTTTGGCTGTTGAGGGAGA
TGATCATGCCTTGACCACCGATACATCAGGTCCAGATACAGGAACCCTTGTTAATTCAGG
TGGTCGTTTTTCTTTGTTACAGAAGTGTTCAAGGCTTTTCAAGTTCTCCCCTAGAAAAAA
GGGTGAGCAGTCATCAGAACAACCATCAGAGAGGAATATATCTTTTGGTGCAAGACTCGA
GGAAGCAACACAGAGCGATGGAGATTATGTGCCAACTCCTGTCTATGAGATAGCCCACGA
TTCTTTCAATGCAGAGGATGAGCTCCCTTCTGACGGTGAAACCAGGGAGAATGAAGAGTC
TGAAAGGCATGACATAGCTGATAATGCCCAGATGGAGTCTTCTGTTGGTGTAGCAGATAA
CAGTATAGATATTCTCGGTACTAAGTCATTTGATGGTGCTAACGACATGGCAGTTGAAGC
AACTATTGTCTCTGTTGATCAAAATGGCGAGGACTCTGTAGTTCCTGCTGAAGCAGGTGT
AGAGCCTGAAACATCAGAGCAAGGTCGGCGCCAGCAAAACCAGAGAGGCAGAAGAAAAGG
TGGTATGAAAAGAACACGGTCTGTTAATGCTGTAGTTGAAGATGCTAAGATGATACTTGG
CGAGGTTTTTGAGGAGAAGACTGATGATCAGGGAGATACAGTCAAGGTGGGTGCTACACG
AAAGCGGCGGTTTGCTGGAGCTACAATAAGTGAACAAGATGAAGAAGGGAGCGAAGCACA
TTCAGAAAGTGTTTCACTTGGAGGGCAGCGCCGTAAGAGGCGGCAAACTGCTGGGGCAGT
GACAGATGCCCCAGGAGAAAGACGTTACAATTTGAGACACAGTAGAGCTGCAAATGCTGG
CGCTGCAACAGCCCAAGCAGACAAAAAAAAATCTTCAAAAGCAAGAAATAAACATACAGT
AGAAGCTTCTGCTGATGACACCGAAGGAACATCAAAGGTTGTTGAGGAACCTGCCCCTGA
GAGCAAGAGGGTATCTGAATCTGCAGACTACGATGCATCCCAGTTGCATGAGTTTTCCCA
GGTTGAAGTTGGTGATGCCCATGCTGTAGACGGTGAGGGTGCTGGTGAGGAAGATGGTGA
TATTTTGGATGGCCAAGATGCACTGCCTGATGTGCCAATGACACCTTCTGGAAGCGAGTT
TGGAGCGGAACAGGAAGATGAGGACGATGATGATTCAGAGAGGCGAAACCAATCAATCAG
CAAGAAGCTATGGTCATTCTTCACTACATGACTTGCTGAAGAGGTCGTCATGTAGGTTAT
TTCTAGCTTTTGTGGTTTCGATTCATGATACCCCATTCTTGGAACTGTAGGTCGTGTGCT
TTTGGTGATTATGTACTAGATCTCCCACTTGATTGTGCTTCTCTCCCGTGTAATTGAAAT
ATATTTGTAGTG