Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d051291_T012
CDS Infomation

cds chromosome:B73_RefGen_v4:4:151994569:152000492:-1 gene:Zm00001d051291 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative cyclin-T1 family protein

Sequence

ATGTATAGGCGGGACACTGCTGCGGCTCAAAGGATCCGTCAGAAGCAGAAAGCGCTCATT
TTGATCGGAGAGAGATTGCTTCTTACAACTATTCGATTTGATTTCAACATTCAGCATCCT
TATAGACCACTTCTTGATGCCATGCAAAATCTTGGCATCAATCAAAAAGAAGTGAAACAA
GTAGCATGGAACTTTGTGAATGACTGGCTTAAAACAACATTGTGTCTACAGTATAAACCC
CAGTACATAGCTGCTGGTTCCCTTTATCTGGCTGCAAAGCTTCACAATATCAAGCTTCCC
TTGCATGGAGCGCATGTTTGGTGGCACCAATTTGATGTTGCACCAAAGCCTCTGGAAGCC
GTCATTCATCAAATGATGGAGCTTGCGGCTTTGAAAAAGTTGATGCCTGCTCGACCCAAT
CCGGTTAAGCTGAAGGAAACTTTATGTGAAGCTAAACTGAGCTTATCTAATAGCCCAGAC
TCTGTGTTGAATCAATCAAACTTGTTAATAAGCAGCTCAAGTCCTGATATTGGCGAGCCC
AGTGACAAAGTGCAGGTGGATTCCTGCCAATACTTGATAAGCAGTCACATGGGTGATTGT
AGGGTCTCAGGTCCTGACAGCAGTTCGTTGAATACTTGTGCTAATAGAAATGTCTCTTGT
AAAGCACATGATGAAGAGAGCTTGGATCAGGCCTTAATAATCAAACATGACAGTGGGATG
ATGCCTTCTAGTAATCAGACATCATTATATGCTACTGTAGGCACTGAGGGCAGTGCTGAA
CTGAAGCAGGATGTAAGCCATTGTAATGACTTCAATATCAGAGTCAATGACGAAAGCTTG
AACCAGGTGTTAAGAAATCAGCATGGTGATGCTATCCCATTACCTGACGTGGTATCGCTG
GATGCCAAGGTGGACAAGGAAAGGAGTTGGTGTGTGGAACCATTAATTGCAAACTCTGAT
TGCTGTACTGACAGTGTTAATGTGGATAGCTTGTGCACTGATCAGAGATTGGCTGATGCT
CCTTCAGGCCCCACAGCTGATGCACCATCCATGCTGGCCGAGGAGGAATCTTATCCTTTT
AGTGCAAAGCTTGAAAATATTGATGTTGCCAGGATCAAAGGTTTATTGATGAAGAGGAAG
AGCCGGAGAGAGATCCAAGACCGAGCCATTGCTTCAGATGGTCTAAGTGAAGAAGACTGG
ATCGAGAGGGAGCTTGAATCTGGGATTGTTACAAACCAAGAAGCCAATTGTGCTGCCATC
TCAGACGAGCTAAGTGACGAAGCCTGGATTGAGAGAGAACTCGAGTCAGGGATTGTGGTC
GGACCAAGAAATGAGCAAGCGATCACTTTTGATGGTTTGAGTGAAGATGATTGGATCGAG
AGAGAGCTGGAGTCTGGGATCATCGTTGAGCCAGCACCTGCTACCAAGAAGCGGAAGCTG
GAGTCAAGCTGTTAG

Peptide Sequence

PEP ID

Zm00001d051291_P012
PEP Infomation

pep chromosome:B73_RefGen_v4:4:151994569:152000492:-1 gene:Zm00001d051291 transcript:Zm00001d051291_T012 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative cyclin-T1 family protein

Sequence

MYRRDTAAAQRIRQKQKALILIGERLLLTTIRFDFNIQHPYRPLLDAMQNLGINQKEVKQ
VAWNFVNDWLKTTLCLQYKPQYIAAGSLYLAAKLHNIKLPLHGAHVWWHQFDVAPKPLEA
VIHQMMELAALKKLMPARPNPVKLKETLCEAKLSLSNSPDSVLNQSNLLISSSSPDIGEP
SDKVQVDSCQYLISSHMGDCRVSGPDSSSLNTCANRNVSCKAHDEESLDQALIIKHDSGM
MPSSNQTSLYATVGTEGSAELKQDVSHCNDFNIRVNDESLNQVLRNQHGDAIPLPDVVSL
DAKVDKERSWCVEPLIANSDCCTDSVNVDSLCTDQRLADAPSGPTADAPSMLAEEESYPF
SAKLENIDVARIKGLLMKRKSRREIQDRAIASDGLSEEDWIERELESGIVTNQEANCAAI
SDELSDEAWIERELESGIVVGPRNEQAITFDGLSEDDWIERELESGIIVEPAPATKKRKL
ESSC

Transcript Sequence

Transcript ID

Zm00001d051291_T012
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:151994569:152000492:-1 gene:Zm00001d051291 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative cyclin-T1 family protein

Sequence

GTTCTCCCGTAGTCCCGTGCCCTCGCGTGCGCTCTATCTGTTTCTGGTGGCGACGACTTG
GCGGTCCCCGCTGCCGCCGTGCCCAGGCCTCTACTTCGGGACCTTCACCGGCGACGAGCA
CCCATCGGGTTGCTTCGCAAAACTTCCAACATCCAGGATACAATTAATTACGATTCCTTC
AACTTTATCTCGATTTATAGGAGGTTGCACAGAGCCCATCCAACAGGGTGTCTCAGACAT
ACTGATGGATGGGGTGCCCAATATCCTTGAGAAATCATCACATGAATGCATGTACTCTTG
GTACTTCACCAGGGAAGAACTAGAGAAATTTTCTCCATCAAGGAAAGATGGTATTACTGA
AAACAAGGAATCAGAAATTCGGCATTTATATTGTTCATTTATCCGGGATGTTGGCATCAG
GCTGAAGCTACCTCAGATGACACTAGCAACAGCAGTCATGCTTTGCCATCGCTTCTATTT
ACACCAGTCCCTTGCCAAAAATGGATGGCAGGTGAGAGATTATATTGTTGTGCCAGTGAT
GGTTGCTGATGTCTATGAAAAGCGACAAGAGTGCAGAGTTTCATTGCCAAGCATTTGTTG
GAAATATGTTCTCCACCATGTCTAACTTAACATTACAGAATATCCTTCAAACCATTTGAA
GTATTTTATCTTGTAATAATATTACTGTATTAGTTTTCTGATTACATGCTAATTGCTGAT
TCATCTTGATGCTACTCTACCTCAAGAGTCATGATCACTTCGTGATTGGACATTTCAAAG
GGATCATTTACCTGCTACAATGTGTCAAGGGCACCAGGGCTCAGAGTAGCTGGACCTTGA
CTACTGGACCTCGACTACATAGTTCGTAGTCATGGCCGGGAATGGGGTGAAGGTTTCTCC
CCTCTGCACCCTATGTTGAGGGAGGAGATTAGCAGTAGAAAGTTTAATCATTGCTTAATC
GTCAAGTGTTCCAATACAAGATGTAAATAGGCACGTAGCCTCTAACGAACAATAGATGGA
AAAGCTCCTCAAATTGAGGCACCGTAGTTTCCTACCAACTAAACTATGCAGGCCTGACAC
TAGCTGCAGTGATCATGCCTACAGCGCGTTTGACACGCGCTGCGTGTTCTTGGCGGCATC
TCTGGCATGGGTCTGGTGCGTGTACCAGGGATTACCTTCCCGGTCGGTAACCAGCAAATT
TCGGTAGTTTTTCTCGTTTTCGATGTCTACCGAGAAATGAAAACCGGTGTGATTTTTTAT
GTATTTCGATTTCAAATTTGAAAATATAATAGTCAAATTTTGGTCAACAAAACGGTTTTT
GAAATCACGAAACGAGAATGTAATCCCTGGCGTGTACTGGTGGCCCCACATGACACATGT
TATTGGAAAACTTCTTTTTAGAACTTTTAAGTCCTGATTGACTTCTCCTAGTATACTAAA
AAGTTTTGAGGTAGTTAAGAGTTATTTTCAGTTTACCTAGGAAGTTTGTGTTTGTCAGAT
ATGATACTATTGTGATTAAGTACAATACTTCGTCATAACTGGGCAAATGCATTCAGAACT
TTCCTATTGAAGTTACTTAACCCCGACCAGCCAACTGGGTTGCAACTTACTGTTACAACT
TAAGCAAGTTTGACATACTTTGACGGATCATCTTGTAAATTACATATTCACCAACAGTTG
CAACAGTATGTGTATTTCTGGCGTCGAAAGTTGAAGATACTCCTTGTCCCCTGGACCATG
TAGTTAGAGTGGCCTATGAAACAATGTATAGGCGGGACACTGCTGCGGCTCAAAGGATCC
GTCAGAAGCAGAAAGCGCTCATTTTGATCGGAGAGAGATTGCTTCTTACAACTATTCGAT
TTGATTTCAACATTCAGCATCCTTATAGACCACTTCTTGATGCCATGCAAAATCTTGGCA
TCAATCAAAAAGAAGTGAAACAAGTAGCATGGAACTTTGTGAATGACTGGCTTAAAACAA
CATTGTGTCTACAGTATAAACCCCAGTACATAGCTGCTGGTTCCCTTTATCTGGCTGCAA
AGCTTCACAATATCAAGCTTCCCTTGCATGGAGCGCATGTTTGGTGGCACCAATTTGATG
TTGCACCAAAGCCTCTGGAAGCCGTCATTCATCAAATGATGGAGCTTGCGGCTTTGAAAA
AGTTGATGCCTGCTCGACCCAATCCGGTTAAGCTGAAGGAAACTTTATGTGAAGCTAAAC
TGAGCTTATCTAATAGCCCAGACTCTGTGTTGAATCAATCAAACTTGTTAATAAGCAGCT
CAAGTCCTGATATTGGCGAGCCCAGTGACAAAGTGCAGGTGGATTCCTGCCAATACTTGA
TAAGCAGTCACATGGGTGATTGTAGGGTCTCAGGTCCTGACAGCAGTTCGTTGAATACTT
GTGCTAATAGAAATGTCTCTTGTAAAGCACATGATGAAGAGAGCTTGGATCAGGCCTTAA
TAATCAAACATGACAGTGGGATGATGCCTTCTAGTAATCAGACATCATTATATGCTACTG
TAGGCACTGAGGGCAGTGCTGAACTGAAGCAGGATGTAAGCCATTGTAATGACTTCAATA
TCAGAGTCAATGACGAAAGCTTGAACCAGGTGTTAAGAAATCAGCATGGTGATGCTATCC
CATTACCTGACGTGGTATCGCTGGATGCCAAGGTGGACAAGGAAAGGAGTTGGTGTGTGG
AACCATTAATTGCAAACTCTGATTGCTGTACTGACAGTGTTAATGTGGATAGCTTGTGCA
CTGATCAGAGATTGGCTGATGCTCCTTCAGGCCCCACAGCTGATGCACCATCCATGCTGG
CCGAGGAGGAATCTTATCCTTTTAGTGCAAAGCTTGAAAATATTGATGTTGCCAGGATCA
AAGGTTTATTGATGAAGAGGAAGAGCCGGAGAGAGATCCAAGACCGAGCCATTGCTTCAG
ATGGTCTAAGTGAAGAAGACTGGATCGAGAGGGAGCTTGAATCTGGGATTGTTACAAACC
AAGAAGCCAATTGTGCTGCCATCTCAGACGAGCTAAGTGACGAAGCCTGGATTGAGAGAG
AACTCGAGTCAGGGATTGTGGTCGGACCAAGAAATGAGCAAGCGATCACTTTTGATGGTT
TGAGTGAAGATGATTGGATCGAGAGAGAGCTGGAGTCTGGGATCATCGTTGAGCCAGCAC
CTGCTACCAAGAAGCGGAAGCTGGAGTCAAGCTGTTAGCTCTGCATTCGAAGGCCAGATT
CCAAGCAGGTGAATAATAACAGATGGTTGCGAGTAGGACCACATCGAAGCCAAGAGATAC
ATGTCGCACAGATGGGAGGATCAATATTATCCTTTTTTTATTTCTTTATAACCAAACACC
TTGGAGTACTTTGACACAAGGGGTGTGTTCACAGTGGGATCTCCCCAGTTTCTTGAATGC
AGAACCGTATCCGTTGTATTTGTTCCTTCTTGTCGTGAGTGTAAATCTAGCGTGTC