Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d051287_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:4:151763880:151768589:1 gene:Zm00001d051287 gene_biotype:protein_coding transcript_biotype:protein_coding description:downstream target of AGL15 2
Sequence

ATGGCTTCGGCGGCTGCAGCGGTGATCCCGGACGGCCGGCGATGGAGCAAAGGTCCGGGC
TCCTCGTCGTCGCCGGTGACAACGGCCATTTTCCTCTTCTTCTTCGTTGTCGTGGTCGGC
GTCCTCGTGTCCGCCCGCTGGATCACCACCACGACTCATCTGTCGACCACCAATCTGGAT
CAGTGGAGCTCAAAGCTGGCTATCTTAACCGCGACGCACACCACCTCCTCCATCCCGGCC
ATCCCCGCGGCACCGCCGCCGCCTCGGCCGACCTACTCCCTCTCCTGCCCGGCGCCGCCG
CTTCACCGTGACCCGACCATCCCCAGCAACATCTCCCAGACCCTCGACCTCGTGCTCTCC
CCCAACGCCTCCTCCGCCTCCACTTGCGCCGCCTTTCCCGACCCCCCGCCGCTCCCTGCC
AACTCCAACGCCTCCTCCACCTGCCCCGCCTACTTCCGCTTCATCCACGAGGACCTCCAC
CCATGGCGCGCCGCTGGGGGCATCACCCGCGCCATGGTCGACCGCGCGCGCGCCACCGCC
AACTTCCGCCTCGTCGTCATCCGGGGCCGCGCGTACATCGAGCGCATCGCGCCGGCATTC
CAGACGCGCGACCTCTTCACCATCTGGGGCATTCTGCAGCTGCTCCGGCGCTACCCCGGC
CGCGTCCCTGACCTCGACCTCATGTTTGACTGCGTCGACTGGCCCGTCGTGCACGCCGAC
CAGTACCAGGGGGAGAACGCCACGCTATTGCCGCCGCTCTTCAGGTACTGCGGCGACAAC
GAGACGCTAGATGTTGTCTTCCCAGACTGGTCATTCTGGGGCTGGCCTGAGATCAACATA
AAACCGTGGGATGCTCTGCAGAAGGAATTGAATGGTGGAAACAAGAGGGTGAAATGGTTG
GCTAGAGAACCTTATGCTTATTGGAAAGGGAATCCAGATGTTGCAGTTACAAGGCAGGAG
CTTGTTAAGTGTAACGTCTCCAGTAAGCATGAATGGAATGCAAGGATTTACAAACAGGAT
TGGCTCAAAGAGATCAAGGCAGGATACAAACAGTCAGATTTGGCTAGTCAATGCACTCAT
AGGTACAAGATTTATATTGAAGGATCAGCATGGTCAGTCAGTGAGAAGTATATTCTAGCT
TGTGATTCCATGACACTAGTTGTTACACCAAAATACTATGATTTTTATTCAAGGGCACAG
AGGATAGGAAAGCAAGGAAGCAACTTTATTCAAAAAGAGCTCAGCATGGAATATGTATAT
GATTACATGTTTCACCTCTTAACTGAGTATGCCAAGCTCCTAAGGTTCAAGCCAAGAAAA
CCACCTGAAGCTATTGAGGTCTGTCCTGAATCTCTGGCTTGCCAAGCTATAGGCCGCGAG
AAGAAGTTCATGGAGGACTCCATGGTGAGATCCGCCAGCGATGCTGGCCCATGTGACCTG
CCTCCTCCTTTCAGTCCTGAGGAATTCAAAGCACTGCGACGTAGGAGAGAGAAGGCAATG
AAGCGGATCGAAACATGGGTGCAAAAAACTTCGAGGCCCATGGTTAGCAAGCCCTGA

Peptide Sequence

PEP ID

Zm00001d051287_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:4:151763880:151768589:1 gene:Zm00001d051287 transcript:Zm00001d051287_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:downstream target of AGL15 2
Sequence

MASAAAAVIPDGRRWSKGPGSSSSPVTTAIFLFFFVVVVGVLVSARWITTTTHLSTTNLD
QWSSKLAILTATHTTSSIPAIPAAPPPPRPTYSLSCPAPPLHRDPTIPSNISQTLDLVLS
PNASSASTCAAFPDPPPLPANSNASSTCPAYFRFIHEDLHPWRAAGGITRAMVDRARATA
NFRLVVIRGRAYIERIAPAFQTRDLFTIWGILQLLRRYPGRVPDLDLMFDCVDWPVVHAD
QYQGENATLLPPLFRYCGDNETLDVVFPDWSFWGWPEINIKPWDALQKELNGGNKRVKWL
AREPYAYWKGNPDVAVTRQELVKCNVSSKHEWNARIYKQDWLKEIKAGYKQSDLASQCTH
RYKIYIEGSAWSVSEKYILACDSMTLVVTPKYYDFYSRAQRIGKQGSNFIQKELSMEYVY
DYMFHLLTEYAKLLRFKPRKPPEAIEVCPESLACQAIGREKKFMEDSMVRSASDAGPCDL
PPPFSPEEFKALRRRREKAMKRIETWVQKTSRPMVSKP

Transcript Sequence

Transcript ID

Zm00001d051287_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:151763880:151768589:1 gene:Zm00001d051287 gene_biotype:protein_coding transcript_biotype:protein_coding description:downstream target of AGL15 2
Sequence

GTGTCTCGCTCGACTGACCCGTTCTTCCCCGAGGGGCGAGGAGGAGTGTCCATGACCGGA
GCCTGACGCGCCTACAGAGGGAGAAAGGAGGGGGAATACCCGGCCCGGTCCAGATCTCTC
AGACCGAAGCGCTGGACAAGGGGCCGATGGCTTCGGCGGCTGCAGCGGTGATCCCGGACG
GCCGGCGATGGAGCAAAGGTCCGGGCTCCTCGTCGTCGCCGGTGACAACGGCCATTTTCC
TCTTCTTCTTCGTTGTCGTGGTCGGCGTCCTCGTGTCCGCCCGCTGGATCACCACCACGA
CTCATCTGTCGACCACCAATCTGGATCAGTGGAGCTCAAAGCTGGCTATCTTAACCGCGA
CGCACACCACCTCCTCCATCCCGGCCATCCCCGCGGCACCGCCGCCGCCTCGGCCGACCT
ACTCCCTCTCCTGCCCGGCGCCGCCGCTTCACCGTGACCCGACCATCCCCAGCAACATCT
CCCAGACCCTCGACCTCGTGCTCTCCCCCAACGCCTCCTCCGCCTCCACTTGCGCCGCCT
TTCCCGACCCCCCGCCGCTCCCTGCCAACTCCAACGCCTCCTCCACCTGCCCCGCCTACT
TCCGCTTCATCCACGAGGACCTCCACCCATGGCGCGCCGCTGGGGGCATCACCCGCGCCA
TGGTCGACCGCGCGCGCGCCACCGCCAACTTCCGCCTCGTCGTCATCCGGGGCCGCGCGT
ACATCGAGCGCATCGCGCCGGCATTCCAGACGCGCGACCTCTTCACCATCTGGGGCATTC
TGCAGCTGCTCCGGCGCTACCCCGGCCGCGTCCCTGACCTCGACCTCATGTTTGACTGCG
TCGACTGGCCCGTCGTGCACGCCGACCAGTACCAGGGGGAGAACGCCACGCTATTGCCGC
CGCTCTTCAGGTACTGCGGCGACAACGAGACGCTAGATGTTGTCTTCCCAGACTGGTCAT
TCTGGGGCTGGCCTGAGATCAACATAAAACCGTGGGATGCTCTGCAGAAGGAATTGAATG
GTGGAAACAAGAGGGTGAAATGGTTGGCTAGAGAACCTTATGCTTATTGGAAAGGGAATC
CAGATGTTGCAGTTACAAGGCAGGAGCTTGTTAAGTGTAACGTCTCCAGTAAGCATGAAT
GGAATGCAAGGATTTACAAACAGGATTGGCTCAAAGAGATCAAGGCAGGATACAAACAGT
CAGATTTGGCTAGTCAATGCACTCATAGGTACAAGATTTATATTGAAGGATCAGCATGGT
CAGTCAGTGAGAAGTATATTCTAGCTTGTGATTCCATGACACTAGTTGTTACACCAAAAT
ACTATGATTTTTATTCAAGGGCACAGAGGATAGGAAAGCAAGGAAGCAACTTTATTCAAA
AAGAGCTCAGCATGGAATATGTATATGATTACATGTTTCACCTCTTAACTGAGTATGCCA
AGCTCCTAAGGTTCAAGCCAAGAAAACCACCTGAAGCTATTGAGGTCTGTCCTGAATCTC
TGGCTTGCCAAGCTATAGGCCGCGAGAAGAAGTTCATGGAGGACTCCATGGTGAGATCCG
CCAGCGATGCTGGCCCATGTGACCTGCCTCCTCCTTTCAGTCCTGAGGAATTCAAAGCAC
TGCGACGTAGGAGAGAGAAGGCAATGAAGCGGATCGAAACATGGGTGCAAAAAACTTCGA
GGCCCATGGTTAGCAAGCCCTGAGAGAGCTTCATGCTTTTCCCTCCCCAATAGATACATA
CCCAATTTTTGTCGTGCTAATAACCCAAGGCATTTCTTATCTGTTTGAATCAAATGTGTG
ATTCTGCAGAAGTTATAGATGGTTTCAGTTCTCCAGATCTTATCAGTATTCTTCTATTTG
TCTTGTGGCTTGTATTTT