Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d051183_T038
CDS Infomation	cds chromosome:B73_RefGen_v4:4:147600083:147616403:-1 gene:Zm00001d051183 gene_biotype:protein_coding transcript_biotype:protein_coding description:Regulator of nonsense transcripts UPF2
Sequence	ATGCAGGAGGCCCGCCTTGAAGAATATAAAAAGATCATTGATCAAAAGATTTCCCTCCGC CGGAGCAACCAAAACCCTGAAAGGCCTGATGCAAACTACCTGAGAACCCTGGACTCTAGT ATTAAGCGCAATACAACCGTTATAAAGAAGTTGAAGACAATAAATGATGAACAGAAGGAT GTGATAATGGATGAGTTAAAAAGTGTGAATTTGAGTAAATTTGTCAGCGAAGCAGTTTCT TACATTTGTGAGGCCAAACTTCGCTCCGCTGATATACAAGCTGCTGTTCAGGTTTGCTCG CTCCTTCATCAAAGATACAAGGACTTCTCTCCTTGTCTTATAGAAGGTCTACTGAAGATC TTCTTTCCTGGAAAATCTGGAGATGATTTGGATGCAGATAAAAATTCGAGAGCCATGAAG AAGAGAAGCACATTGAAACTTTTGATTGAACTATATTTTGTTGGAATTGTCGAAGATGCT AGCATATTTGTAAATATTATAAAAGATCTTACATCAGCAGAACATTTGAAGGACCGTGAA GGAACTCAAACAAACCTATCTCTTCTATCTACCTTTGCTCGTCAAGGGAAGTTTTTTGTA GGGCTACAACCTCATGGTCAAGAAGCTTATGACGAGTTCTTTAAGGACCTAAATGTTACT GCTGAGCAGAAGAAGTTCTTTAAGAAAGCCTTGAACTCTTACTATGATGCTGTAGCTGAA CTACTACAATCAGAACATGCGTCTCTTCGTCTAATGGAGGCGGAGAATGCAAAAGTTTTA AGTGCCAAAGGTGAACTAAGTGATGAGAACACATCCTCATATGAGAAACTCAGGAAGTCT TTTGATCAGTTACTACGTGGTGTTTCCTCGTTGGCTGAATCTCTTGACATGCAACCTCCA GTGATGCCAGATGATGGAAATACAACAAGAGTTACTACAGGAACCGATGCGTTGCCTTCT TCTGGAAAAGAATCATCTGCATTGGAACCTATCTGGGATGATGAAGATACCAAAGCTTTT TATGAATCTTTACCTGATCTCAGAGCATTTGTGCCAGCTGTATTACTGGGAGAGGTTGAA CCAAAATCAAATGAGCAACATGTTAAGGGCCGTGAGCTATCTGGTGAGTCCACTTCAGAA CAAGAGACTGAACTACATGACAATGTTCCAACTTCTGCCACTGAACGTCAACTAGAAGTT AAAGTAGATGATCTAGTGAAAGAGAGTGAAGACAGAGATAAAGAGAAGGGGAAGGATGGA GAAAAGGAAAAATCCAAGGAGAAGGATCTGGATAAGAAAAATGAAAGAGAGAAGGAGAAA GGAAGAGTCTTGGATGGCGCAAGTCTGGATAACCTCCTGCAGAGGCTGCCAGGATGTGTC AGTCGTGATCTCATTGATCAATTGACGGTTGAGTTTTGCTACCTAAATTCTAAAGCAAAT CGAAAGAAACTTGTGCGTGCCTTATTCAATGTTAATAGGACTTCACTGGAACTGTTGCCA TACTATTCTCGTTTGGTTGCAACACTCTCAACCTGTATGAAAGATGTTCCAAGTATGCTT CTGTCTATGCTTGAAGAGGAGTTCAACTTTTTAATAAATAAGAAGGACCAGATCAACATA GAAACAAAAATAAAAAATATACGGTTTATCGGGGAGTTGTGCAAGTTCAAAATGGCTCCT CCAGCTCTTGTTTTTAGCTGTTTGAAGGCCTGCCTTGATGATTTCAGTCATCATAATATT GATGTGGCTTGCAACCTTCTTGAGACTTGTGGTCGTTTTTTGTATCGCTCACCTGAAACT ACCATTCGCATGGCTAACATGCTGGAGATACTGATGAGATTGAAAAATGTCAAGAATTTG GATTCACGCCACAGTACACTTGTAGAAAACGCCTACTACCTTTGTAAACCGCCCGAAAGA TCTGCGCGGATATCGAAAGTTCGGCCACCGTTGCATCAATACATAAGAAAGTTGCTTTTC TCAGATCTTGACAAATCAAGTGTTGAACATGTTTTGCGCCAACTACGCAAATTACCTTGG GCAGAGTGTCAACAATACCTTCTGAAGTGCTTTCTAAAGGTTCACAAAGGAAAGTACAGC CAAGTTCATCTGATTGCTCTTCTCACTGCTAGTCTCAGCCGCTATCACGATGACTTTGCT GTCTCAGTGGTAGATGAGGTTTTAGAAGAGATAAGGGTTGGATTGGAGTTGAATGACTAT GGGATGCAACAAAGGAGGCTTGCCCACATGCGGTTCCTTGGAGAGCTATACAGCTACAAG CATATAGATTCATCAGTTGTTTTTGATACACTGTACCTTATCATTGTGTTTGGTCATGGA ACTCCGGAACAAGATGTGCTGGATCCACCAGAAGATTGTTTCAGAATCAGGTTGATCATT ACACTTCTACAGACCTGTGGTCACTATTTCAGTAAGGGGTCTTCAAAAAGGAAGCTCGAC AAATTCTTGCTACACTTTCAAAGATACATTATTAGTAAAGGGCCCTTACCACTCGACATA GAGTTTGACATTCAGGATTTATTTGGTGAGCTACGACCAACCATGTCTAGGTATTCGTCA ATTGAGGAACTTGTTGCCGCGTTAGTTGAGTTTGAAGAAAATGAACGTTCAGCCCCAGTA GAAAAGGTTGAAAATGAAAGACACTCCGACAATGAATCTCAGAAAAGACACTCGCGAGAT GCTGGTCCATCTGTGAATGGTGAAAGCGCTGCAAATGGAACCGAGGAAAATGGCAAGGCT CATGAAGTAGCAGATAGTGAGAGCTATTCAGATACTGGCAGCATTGATGGACGGGAAGAA GAGGAGGATATATTATCTGAGGATAAATCAAATGATGGCTCAGATAACGAAGGCGACGAT GAAGATGATGGCATTCCTGTTGTTTCTGATGAAGATGAAAATGTTGAGGTTAGACAGAAA GTCATGAATGTTGATCCTAAGGAGCAAGAAGACTTCGATCGAGAGCTCAAAGCCCTTCTT CAGGAGAGCTTGGAGTCTCGTAAATCAGAGGCCCGTTCAAGGCTCCCTTTGAATATGATG GTGCCGATGAACGTCCTCGAGGGTTCAAAAGACTCAAGGGCCACAGAATCTGAGAGTGGA GAAGAAACAGTAGACGAAGAGGGTGGGAATGCTGGGGGTAGCAGCAAGGTGCGTGTGAAG GTGCTAATGAAGAAAGGACACAAGCAACAGACAAGACAAATGTTAATTCCGGCCGATAGT TCAATTGTGCAAAGCACGAAGCAGCAGGAAGCTGCTGAGCTTGAG

Peptide Sequence

PEP ID	Zm00001d051183_P038
PEP Infomation	pep chromosome:B73_RefGen_v4:4:147600083:147616403:-1 gene:Zm00001d051183 transcript:Zm00001d051183_T038 gene_biotype:protein_coding transcript_biotype:protein_coding description:Regulator of nonsense transcripts UPF2
Sequence	MQEARLEEYKKIIDQKISLRRSNQNPERPDANYLRTLDSSIKRNTTVIKKLKTINDEQKD VIMDELKSVNLSKFVSEAVSYICEAKLRSADIQAAVQVCSLLHQRYKDFSPCLIEGLLKI FFPGKSGDDLDADKNSRAMKKRSTLKLLIELYFVGIVEDASIFVNIIKDLTSAEHLKDRE GTQTNLSLLSTFARQGKFFVGLQPHGQEAYDEFFKDLNVTAEQKKFFKKALNSYYDAVAE LLQSEHASLRLMEAENAKVLSAKGELSDENTSSYEKLRKSFDQLLRGVSSLAESLDMQPP VMPDDGNTTRVTTGTDALPSSGKESSALEPIWDDEDTKAFYESLPDLRAFVPAVLLGEVE PKSNEQHVKGRELSGESTSEQETELHDNVPTSATERQLEVKVDDLVKESEDRDKEKGKDG EKEKSKEKDLDKKNEREKEKGRVLDGASLDNLLQRLPGCVSRDLIDQLTVEFCYLNSKAN RKKLVRALFNVNRTSLELLPYYSRLVATLSTCMKDVPSMLLSMLEEEFNFLINKKDQINI ETKIKNIRFIGELCKFKMAPPALVFSCLKACLDDFSHHNIDVACNLLETCGRFLYRSPET TIRMANMLEILMRLKNVKNLDSRHSTLVENAYYLCKPPERSARISKVRPPLHQYIRKLLF SDLDKSSVEHVLRQLRKLPWAECQQYLLKCFLKVHKGKYSQVHLIALLTASLSRYHDDFA VSVVDEVLEEIRVGLELNDYGMQQRRLAHMRFLGELYSYKHIDSSVVFDTLYLIIVFGHG TPEQDVLDPPEDCFRIRLIITLLQTCGHYFSKGSSKRKLDKFLLHFQRYIISKGPLPLDI EFDIQDLFGELRPTMSRYSSIEELVAALVEFEENERSAPVEKVENERHSDNESQKRHSRD AGPSVNGESAANGTEENGKAHEVADSESYSDTGSIDGREEEEDILSEDKSNDGSDNEGDD EDDGIPVVSDEDENVEVRQKVMNVDPKEQEDFDRELKALLQESLESRKSEARSRLPLNMM VPMNVLEGSKDSRATESESGEETVDEEGGNAGGSSKVRVKVLMKKGHKQQTRQMLIPADS SIVQSTKQQEAAELE

Transcript Sequence

Transcript ID	Zm00001d051183_T038
Transcript Infomation	cdna chromosome:B73_RefGen_v4:4:147600083:147616403:-1 gene:Zm00001d051183 gene_biotype:protein_coding transcript_biotype:protein_coding description:Regulator of nonsense transcripts UPF2
Sequence	ATGCAGGAGGCCCGCCTTGAAGAATATAAAAAGATCATTGATCAAAAGATTTCCCTCCGC CGGAGCAACCAAAACCCTGAAAGGCCTGATGCAAACTACCTGAGAACCCTGGACTCTAGT ATTAAGCGCAATACAACCGTTATAAAGAAGTTGAAGACAATAAATGATGAACAGAAGGAT GTGATAATGGATGAGTTAAAAAGTGTGAATTTGAGTAAATTTGTCAGCGAAGCAGTTTCT TACATTTGTGAGGCCAAACTTCGCTCCGCTGATATACAAGCTGCTGTTCAGGTTTGCTCG CTCCTTCATCAAAGATACAAGGACTTCTCTCCTTGTCTTATAGAAGGTCTACTGAAGATC TTCTTTCCTGGAAAATCTGGAGATGATTTGGATGCAGATAAAAATTCGAGAGCCATGAAG AAGAGAAGCACATTGAAACTTTTGATTGAACTATATTTTGTTGGAATTGTCGAAGATGCT AGCATATTTGTAAATATTATAAAAGATCTTACATCAGCAGAACATTTGAAGGACCGTGAA GGAACTCAAACAAACCTATCTCTTCTATCTACCTTTGCTCGTCAAGGGAAGTTTTTTGTA GGGCTACAACCTCATGGTCAAGAAGCTTATGACGAGTTCTTTAAGGACCTAAATGTTACT GCTGAGCAGAAGAAGTTCTTTAAGAAAGCCTTGAACTCTTACTATGATGCTGTAGCTGAA CTACTACAATCAGAACATGCGTCTCTTCGTCTAATGGAGGCGGAGAATGCAAAAGTTTTA AGTGCCAAAGGTGAACTAAGTGATGAGAACACATCCTCATATGAGAAACTCAGGAAGTCT TTTGATCAGTTACTACGTGGTGTTTCCTCGTTGGCTGAATCTCTTGACATGCAACCTCCA GTGATGCCAGATGATGGAAATACAACAAGAGTTACTACAGGAACCGATGCGTTGCCTTCT TCTGGAAAAGAATCATCTGCATTGGAACCTATCTGGGATGATGAAGATACCAAAGCTTTT TATGAATCTTTACCTGATCTCAGAGCATTTGTGCCAGCTGTATTACTGGGAGAGGTTGAA CCAAAATCAAATGAGCAACATGTTAAGGGCCGTGAGCTATCTGGTGAGTCCACTTCAGAA CAAGAGACTGAACTACATGACAATGTTCCAACTTCTGCCACTGAACGTCAACTAGAAGTT AAAGTAGATGATCTAGTGAAAGAGAGTGAAGACAGAGATAAAGAGAAGGGGAAGGATGGA GAAAAGGAAAAATCCAAGGAGAAGGATCTGGATAAGAAAAATGAAAGAGAGAAGGAGAAA GGAAGAGTCTTGGATGGCGCAAGTCTGGATAACCTCCTGCAGAGGCTGCCAGGATGTGTC AGTCGTGATCTCATTGATCAATTGACGGTTGAGTTTTGCTACCTAAATTCTAAAGCAAAT CGAAAGAAACTTGTGCGTGCCTTATTCAATGTTAATAGGACTTCACTGGAACTGTTGCCA TACTATTCTCGTTTGGTTGCAACACTCTCAACCTGTATGAAAGATGTTCCAAGTATGCTT CTGTCTATGCTTGAAGAGGAGTTCAACTTTTTAATAAATAAGAAGGACCAGATCAACATA GAAACAAAAATAAAAAATATACGGTTTATCGGGGAGTTGTGCAAGTTCAAAATGGCTCCT CCAGCTCTTGTTTTTAGCTGTTTGAAGGCCTGCCTTGATGATTTCAGTCATCATAATATT GATGTGGCTTGCAACCTTCTTGAGACTTGTGGTCGTTTTTTGTATCGCTCACCTGAAACT ACCATTCGCATGGCTAACATGCTGGAGATACTGATGAGATTGAAAAATGTCAAGAATTTG GATTCACGCCACAGTACACTTGTAGAAAACGCCTACTACCTTTGTAAACCGCCCGAAAGA TCTGCGCGGATATCGAAAGTTCGGCCACCGTTGCATCAATACATAAGAAAGTTGCTTTTC TCAGATCTTGACAAATCAAGTGTTGAACATGTTTTGCGCCAACTACGCAAATTACCTTGG GCAGAGTGTCAACAATACCTTCTGAAGTGCTTTCTAAAGGTTCACAAAGGAAAGTACAGC CAAGTTCATCTGATTGCTCTTCTCACTGCTAGTCTCAGCCGCTATCACGATGACTTTGCT GTCTCAGTGGTAGATGAGGTTTTAGAAGAGATAAGGGTTGGATTGGAGTTGAATGACTAT GGGATGCAACAAAGGAGGCTTGCCCACATGCGGTTCCTTGGAGAGCTATACAGCTACAAG CATATAGATTCATCAGTTGTTTTTGATACACTGTACCTTATCATTGTGTTTGGTCATGGA ACTCCGGAACAAGATGTGCTGGATCCACCAGAAGATTGTTTCAGAATCAGGTTGATCATT ACACTTCTACAGACCTGTGGTCACTATTTCAGTAAGGGGTCTTCAAAAAGGAAGCTCGAC AAATTCTTGCTACACTTTCAAAGATACATTATTAGTAAAGGGCCCTTACCACTCGACATA GAGTTTGACATTCAGGATTTATTTGGTGAGCTACGACCAACCATGTCTAGGTATTCGTCA ATTGAGGAACTTGTTGCCGCGTTAGTTGAGTTTGAAGAAAATGAACGTTCAGCCCCAGTA GAAAAGGTTGAAAATGAAAGACACTCCGACAATGAATCTCAGAAAAGACACTCGCGAGAT GCTGGTCCATCTGTGAATGGTGAAAGCGCTGCAAATGGAACCGAGGAAAATGGCAAGGCT CATGAAGTAGCAGATAGTGAGAGCTATTCAGATACTGGCAGCATTGATGGACGGGAAGAA GAGGAGGATATATTATCTGAGGATAAATCAAATGATGGCTCAGATAACGAAGGCGACGAT GAAGATGATGGCATTCCTGTTGTTTCTGATGAAGATGAAAATGTTGAGGTTAGACAGAAA GTCATGAATGTTGATCCTAAGGAGCAAGAAGACTTCGATCGAGAGCTCAAAGCCCTTCTT CAGGAGAGCTTGGAGTCTCGTAAATCAGAGGCCCGTTCAAGGCTCCCTTTGAATATGATG GTGCCGATGAACGTCCTCGAGGGTTCAAAAGACTCAAGGGCCACAGAATCTGAGAGTGGA GAAGAAACAGTAGACGAAGAGGGTGGGAATGCTGGGGGTAGCAGCAAGGTGCGTGTGAAG GTGCTAATGAAGAAAGGACACAAGCAACAGACAAGACAAATGTTAATTCCGGCCGATAGT TCAATTGTGCAAAGCACGAAGCAGCAGGAAGCTGCTGAGCTTGAG