Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d051180_T007
CDS Infomation

cds chromosome:B73_RefGen_v4:4:147443012:147450623:-1 gene:Zm00001d051180 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative homeodomain-like transcription factor superfamily protein

Sequence

ATGCAGATGTCAACAGATCCTAATCACTACGGGGTATTTCCACATTCATTCTGCAACCAA
CATGTGGTTTCATTTCAGACGAGTTCAGTTACTAGTGTATCAGGAGCCATACCAGTTTGT
CTAGACACTTCCAGTGGAATGAATGGCAATATGGCGATGTTGAACACTACAACTTCAACG
ATTGTATCCACTGGTTCACCAAACATGAGTGCTGAGTTTTCTTGCCAGAACCTCAAGTAT
ACTGCACCGTTGGCTGTGGAGTGGTCCTATCCGGAGCTGCAATTGTTGAATGATGGCCTC
AACAAGTATGCAAATGAACCAGGAATCATGAAGTACATAAAGATAGCAGCCACGTTACCA
GACAAGACAGTAAGAGATGTTGCCATGAGATGCCAATGGATGGCAGCGAGAAAAGAAGCT
ACAAGACGACGGAAACCTGAAGAACATTATCTTGGAAAAAAGATAAAAGATAGAAAGGAT
AAAATGGCTGAGCCGTCATCATGGGGTACCAATCCTCCTGTTCAGACTGAGATGAGATGT
TCCTCTTCTATGCCTGCTAACGCCAAACACAATGGGTTTCTCTCTGCAGACTCTCAAATT
GATCATGGAATGCTAAATATATTGGAAGAAAATGCTAAGCTACTCAATCAAATAGAAGTA
AATATTTTAACATCACAGGCCCATAACAATATTGAACTTTTCCATCACGCAAGAAGGAAC
ATCAATGGTCTTTTACAAAGCATGAGCCAAATTCCCGGAATAATGAGCAAGATGCCCCCA
TTGCCTATTTCGGTGGATGAAAGGCTAGCTAGCTGCATACTCCCTCGTGCTCCTATGGCT
CAAGTTCTTGGCAGCAGTCATTTGAAAGAAGAACGAAGAGTATGGTAG

Peptide Sequence

PEP ID

Zm00001d051180_P007
PEP Infomation

pep chromosome:B73_RefGen_v4:4:147443012:147450623:-1 gene:Zm00001d051180 transcript:Zm00001d051180_T007 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative homeodomain-like transcription factor superfamily protein

Sequence

MQMSTDPNHYGVFPHSFCNQHVVSFQTSSVTSVSGAIPVCLDTSSGMNGNMAMLNTTTST
IVSTGSPNMSAEFSCQNLKYTAPLAVEWSYPELQLLNDGLNKYANEPGIMKYIKIAATLP
DKTVRDVAMRCQWMAARKEATRRRKPEEHYLGKKIKDRKDKMAEPSSWGTNPPVQTEMRC
SSSMPANAKHNGFLSADSQIDHGMLNILEENAKLLNQIEVNILTSQAHNNIELFHHARRN
INGLLQSMSQIPGIMSKMPPLPISVDERLASCILPRAPMAQVLGSSHLKEERRVW

Transcript Sequence

Transcript ID

Zm00001d051180_T007
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:147443012:147450623:-1 gene:Zm00001d051180 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative homeodomain-like transcription factor superfamily protein

Sequence

GGAATCCCGGCGCCAGTGTTTCCATCCCGCAGCGCTGAATTCCAAGAGATCTCGTCTGCC
CCTCGTCCTCCTCTCTTCGGGCCATCACGGCGGCGGCAGCGGCGGCTCGGCTCGTTTGCG
GTGTGCCGCAAGTTGTGCAACTGAACTGCGCTTTGCCCGCCCCCGGCCCTTCCTTTTTGG
GCGCATATAAACGAGCAACGTCTCGCCTTTGGGGTCGGCGGGGCCGCCGCTTTTTAGTTG
CGCTCTCCCCTCCTCTCCCCCGCACCCTGCCTGCCTTTTCCATTGGAGCGCACAAAGCCG
GACGGCACCACCATTTAAAGAAGGCCAACCAAGCACACGGCACGGCGAAGAAGAGACCAC
CACCTCACACTCCATTCACGGCAGGATCGATCGCTATAGCTGCTGCGCCCCCCTGCACCC
TTGCGTCTTCTGCCGCTGCTGCGCTGCGGCTCCGGCACAGTCTCTCAGAACTGAGTACTT
TTGTTTGAAGAAAGATTTGTTCAGTCAAGCTTTGCAAATTACCATCATAGTTTGGATGAC
ATCCATGGTTACTTTGATGAGTTTATGGAGCCCTGGTTGCCGAGCTTATCTGGGTTCTCT
GACAATGGAACTGTAATATTTGCAACAAAACTTTCCTCATCTTGGAAGAAAGTTTCAAGA
GGGCTTGACAACTTATAAGTGTCCTGTGAAGCCTGATGACGTGTTCGTGAGGGCGAAGTG
GGAGAGCAAAATTACTTCTGGCATGCAGATGTCAACAGATCCTAATCACTACGGGGTATT
TCCACATTCATTCTGCAACCAACATGTGGTTTCATTTCAGACGAGTTCAGTTACTAGTGT
ATCAGGAGCCATACCAGTTTGTCTAGACACTTCCAGTGGAATGAATGGCAATATGGCGAT
GTTGAACACTACAACTTCAACGATTGTATCCACTGGTTCACCAAACATGAGTGCTGAGTT
TTCTTGCCAGAACCTCAAGTATACTGCACCGTTGGCTGTGGAGTGGTCCTATCCGGAGCT
GCAATTGTTGAATGATGGCCTCAACAAGTATGCAAATGAACCAGGAATCATGAAGTACAT
AAAGATAGCAGCCACGTTACCAGACAAGACAGTAAGAGATGTTGCCATGAGATGCCAATG
GATGGCAGCGAGAAAAGAAGCTACAAGACGACGGAAACCTGAAGAACATTATCTTGGAAA
AAAGATAAAAGATAGAAAGGATAAAATGGCTGAGCCGTCATCATGGGGTACCAATCCTCC
TGTTCAGACTGAGATGAGATGTTCCTCTTCTATGCCTGCTAACGCCAAACACAATGGGTT
TCTCTCTGCAGACTCTCAAATTGATCATGGAATGCTAAATATATTGGAAGAAAATGCTAA
GCTACTCAATCAAATAGAAGTAAATATTTTAACATCACAGGCCCATAACAATATTGAACT
TTTCCATCACGCAAGAAGGAACATCAATGGTCTTTTACAAAGCATGAGCCAAATTCCCGG
AATAATGAGCAAGATGCCCCCATTGCCTATTTCGGTGGATGAAAGGCTAGCTAGCTGCAT
ACTCCCTCGTGCTCCTATGGCTCAAGTTCTTGGCAGCAGTCATTTGAAAGAAGAACGAAG
AGTATGGTAGGCCACTGCTAGACAGGGAAGCAGCTCAATTTTCAGCAGCAGTTTGACCAA
AAATATCTGAAGAGCCATGTGCTTGGGAGTCTGCATGGAGAAGCATAGGTGAAAGAACGA
TCTGGCTTTTCTGATGGTCTCAAAGCTACAGAAGCAACATGATCCACTTCACCTCATGGC
TTAAAGAACACTGTCTAGCTTGCCTTGTCAGATAGGGAGAGTTTTCCGTAATCTGCAGTT
TTCCTCACCTTGGTTGCACATATCGATTCTTTTTTGGGTTTTGTCCTGGTGATCGATGTT
AACAGAAGTGTAGCGTAGAAATTGAACTTTGATATGAATAATTAGCAGGAAAAGCCTAGC
CTTTTTGTCAGTTACTACAATGGTAACCAACCTCCTGTGTATCTAGTATTCTAGTTCTAG
TATGATGCATATGCAAGCCTGGTTCTCTAAACGTCAATCTCTCCCCTTCTATAAGTGCTG
CGTTTCTTTCTAAAACTGCAAGAATTTAGCAGAATTCCAATCATAAGTGTTGTAACACAC
GCTACGAACCAGAGTAATTTGCTATTATAGTACTTATTTGAAATGACTTTT