Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d051135_T008
CDS Infomation

cds chromosome:B73_RefGen_v4:4:145465940:145473140:1 gene:Zm00001d051135 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative casein kinase family protein

Sequence

ATGCTACCTGACTGTTGTCCATCTCATGTTTACCAGGAATCTGTAAAATCAAGGCATCCT
CAGCTTCATTATGAGTCGAAACTATACATGCTTCTCCAAGGGGGAACTGGAATTCCTCAT
TTGAAATGGTTTGGGGTGGATGGGGAGTACAATGTCATGGTCATTGATCTTCTTGGTCCA
AGTCTGGAAGACGTATTCAACCAGTGCAACAGAAAGTTTTCCCTTAAAACAGTACTTATG
CTAGCTGATCAGATGATAACTAGGGTAGAGTACATGCACACGAGGGGGTTCCTTCATCGT
GATATCAAGCCAGACAATTTCCTTGTGGGCTTAGGTCGTAAAGCAAATCAGGTTTATATC
ATTGACTATGGCCTTGCGAAGAAGTATCGGGACCTCCAAACTCATAAACACATTCCATAC
AGGGAGAACAAAAACCTCACAGGAACTGCACGATATGCTAGTGTAAACACCCATCTTGGA
GTAGAACAAAGCAGAAGAGATGACTTAGAGTCTCTTGGTTATGTGCTGATGTACTTCTTA
AGAGGAAGCCTTCCTTGGCAAGGCCTGAAAGCTGGAACAAAAAAACAAAAGTATGACAAA
ATTAGTGAGAAGAAAATGCTAACCTCAATTGAGGCCCTTTGTAAATCTTATCCATCAGAA
TTCATTACGTACTTCCATTATTGTCGCTCTTTGCGTTTTGAAGATAAGCCAGACTATAGC
TATTTGAAGAAAAATTTCCGGGATTTATTCATCCGTGAAGGTTACCAGCTTGATTATGTA
TTTGATTGGACTGTGTCAAGGCAAGCTGTGGACAATAACAGATTGCGACTGAGCGGGAAG
ACAGGTGGCTTGGTGGGACCATCTGTGGATAGGGCTGAACGAGCTGCAGCAAGACAAGAT
GTTCCAGATAGATTCACTGGTCAAGCTGGTGCTTTTGCTAGAAGAACCGGCTCTGGTTCT
GGTCAATACGGAGAACACACAAAGCACAGGACTCTGTTGGATTCACTTATGGCATCCAAG
ATGGCTGTTGATTCAGATAAAAGAAAGCATTCATCATCTCGGAATGGAAGCACATCAAGG
AAGGCTCTTCTGTCAAGCAGCCGAGGTTCTGGAGATCCCAGCGACCCAAATCGCAGTAGC
CACCTAGTCCCGACCACCAGCAGCAGCAGCCGTCCATCAACCAATCAAAGGCTTCACCAG
TCAACTGGACTTGAGGGCAGGACCTCGTCATTCCCAAAACCTGGAAGAATCGGCCAGGAT
GATCCCACTATGAGGAGTTTTGAACGCCTTACTATCAGCGCAGAGAGGAGGAGATGA

Peptide Sequence

PEP ID

Zm00001d051135_P008
PEP Infomation

pep chromosome:B73_RefGen_v4:4:145465940:145473140:1 gene:Zm00001d051135 transcript:Zm00001d051135_T008 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative casein kinase family protein

Sequence

MLPDCCPSHVYQESVKSRHPQLHYESKLYMLLQGGTGIPHLKWFGVDGEYNVMVIDLLGP
SLEDVFNQCNRKFSLKTVLMLADQMITRVEYMHTRGFLHRDIKPDNFLVGLGRKANQVYI
IDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFL
RGSLPWQGLKAGTKKQKYDKISEKKMLTSIEALCKSYPSEFITYFHYCRSLRFEDKPDYS
YLKKNFRDLFIREGYQLDYVFDWTVSRQAVDNNRLRLSGKTGGLVGPSVDRAERAAARQD
VPDRFTGQAGAFARRTGSGSGQYGEHTKHRTLLDSLMASKMAVDSDKRKHSSSRNGSTSR
KALLSSSRGSGDPSDPNRSSHLVPTTSSSSRPSTNQRLHQSTGLEGRTSSFPKPGRIGQD
DPTMRSFERLTISAERRR

Transcript Sequence

Transcript ID

Zm00001d051135_T008
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:145465940:145473140:1 gene:Zm00001d051135 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative casein kinase family protein

Sequence

GCCCCAGGCCCCGAAACCTCCGAGTTCTCTCGCCAATTCGATCCGCCTCACCGCCGCCGC
CCGTCCGCCGGTCGGCCTTGACTGCTCCGTTGCACGTGGCGGTTCGCAGCGCGGAATCTA
CCTTGTGTTGAGAGATCCGGGGAAACCCTTGTTCCCGGTCGTTCCGGCTCGAATCTTCTG
CGGACTGGCAATGTAAGCGTTCTCCATCGGAGGGCGACGATCTACGGGGCGGTTGTTGGC
GGGGTCGCGGGAATGGAGCACGTGTTCGGAGGGAAGTTTAAGCTTGGGAAGAAGATCGGG
AGCGGATCTTTCGGCGAGCTCTATCTCGGCGTCAACATACAGAGCGGCGAGGAGGTGGCT
ATCAAGTTGGTATGAGATAATCTGATACTGTTCGTGCACCATTTTTCTCTGTCGTGGAGT
TATATGCCTGGCATTCGGCATGAGTTTGTTCCATATGCAAACATATCATGGTCTACCATT
CTAGCAACGGTTTCGTGAAGAATTTGTGTGTAGATTATGGGATGACAGAAAATGGATGAT
GTTCTGCATGTAATTGCTTTAAAAAAGACTGGCATGGTCCCGAGCTATATTTTTACATGA
GTAATAACAAGATTTTAAAACCTTTTCTTGGTTGTCCATGCGAATTGACCTGTGGATCCA
GTTCTAATTCCAATCATGGTTCTGTTACCTTTCATTAGTGTGGCTGTATAACAGTTCCTT
TTTTTTTAAAGAAAGTAACAAGGCATATTTTCAGAGCATATGAAGAAAGCACTTGCAGAA
TGTTGATATCTTGTGGTCTATGATAAGAGAATTTAAAGTTTTACATTCTATCCTGTATAT
ATGTCATGATCATGGATTGACTGAAGCAAAAAAAAAGTGCTGAGAATGTTAGGTTATATT
TTTCTATTTGTAATGGCTTTCTAGCCTGAACATATACTGTTACCTTTTGAGATACTGTTA
CCTTTTGAGACAGTATGATATTTCAGTCTTACTCTTGGTAGTACCCCTTTCAACCTCAAG
ACATGCTACCTGACTGTTGTCCATCTCATGTTTACCAGGAATCTGTAAAATCAAGGCATC
CTCAGCTTCATTATGAGTCGAAACTATACATGCTTCTCCAAGGGGGAACTGGAATTCCTC
ATTTGAAATGGTTTGGGGTGGATGGGGAGTACAATGTCATGGTCATTGATCTTCTTGGTC
CAAGTCTGGAAGACGTATTCAACCAGTGCAACAGAAAGTTTTCCCTTAAAACAGTACTTA
TGCTAGCTGATCAGATGATAACTAGGGTAGAGTACATGCACACGAGGGGGTTCCTTCATC
GTGATATCAAGCCAGACAATTTCCTTGTGGGCTTAGGTCGTAAAGCAAATCAGGTTTATA
TCATTGACTATGGCCTTGCGAAGAAGTATCGGGACCTCCAAACTCATAAACACATTCCAT
ACAGGGAGAACAAAAACCTCACAGGAACTGCACGATATGCTAGTGTAAACACCCATCTTG
GAGTAGAACAAAGCAGAAGAGATGACTTAGAGTCTCTTGGTTATGTGCTGATGTACTTCT
TAAGAGGAAGCCTTCCTTGGCAAGGCCTGAAAGCTGGAACAAAAAAACAAAAGTATGACA
AAATTAGTGAGAAGAAAATGCTAACCTCAATTGAGGCCCTTTGTAAATCTTATCCATCAG
AATTCATTACGTACTTCCATTATTGTCGCTCTTTGCGTTTTGAAGATAAGCCAGACTATA
GCTATTTGAAGAAAAATTTCCGGGATTTATTCATCCGTGAAGGTTACCAGCTTGATTATG
TATTTGATTGGACTGTGTCAAGGCAAGCTGTGGACAATAACAGATTGCGACTGAGCGGGA
AGACAGGTGGCTTGGTGGGACCATCTGTGGATAGGGCTGAACGAGCTGCAGCAAGACAAG
ATGTTCCAGATAGATTCACTGGTCAAGCTGGTGCTTTTGCTAGAAGAACCGGCTCTGGTT
CTGGTCAATACGGAGAACACACAAAGCACAGGACTCTGTTGGATTCACTTATGGCATCCA
AGATGGCTGTTGATTCAGATAAAAGAAAGCATTCATCATCTCGGAATGGAAGCACATCAA
GGAAGGCTCTTCTGTCAAGCAGCCGAGGTTCTGGAGATCCCAGCGACCCAAATCGCAGTA
GCCACCTAGTCCCGACCACCAGCAGCAGCAGCCGTCCATCAACCAATCAAAGGCTTCACC
AGTCAACTGGACTTGAGGGCAGGACCTCGTCATTCCCAAAACCTGGAAGAATCGGCCAGG
ATGATCCCACTATGAGGAGTTTTGAACGCCTTACTATCAGCGCAGAGAGGAGGAGATGAA
TCTTTGGAGGTGCAAAAGGTCTGACCATTGACGAGTATACTGATTTCATTGAATATTCAT
TCGGTTCCAGATGATGCTTACTGATGAGCAAGTCAAAAGATTATGTACTGTGCATGATGC
TGAGCTCTTCACATTGCGATGCTCGTCGAATCTTGGCACAGATTTGAGTTCTGTACATTC
GTTTTCCAAACGGTTAGCGAAGCATTTAGCACCCCGTTAGGGACGTGCAAAATGATGATG
ATTAACACTTATATAATGACAATGAAATAAAAATAGCTCGCTAGGCTAGCTTTACCTTTG
ATGTAGATTTTCATTTGTGCAATGGAGTATTAGACATAAGGTCATGTTTGATCCATTAGT
TATTAATAGTTAGTGGATTTATACAATATTTGAT