Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d051114_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:4:143867751:143870497:1 gene:Zm00001d051114 gene_biotype:protein_coding transcript_biotype:protein_coding description:PseudoARR-B transcription factor%3B Two-component response regulator-like PRR1

Sequence

ATGTCCAACAGAGACGAGGTGTCTGTTGTTGTCAAGTGCTTGCGGCTTGGCGCCGCCGAG
TACCTGGTGAAGCCGCTGCGCACGAATGAGTTGCTGAACCTTTGGACCCATGTGTGGCGG
CGGAGACGGATGCTTGGTTTGCCCGAGAAAAACTTCTTCAATGACAACTTCGAGTTGGTG
CTCTCAGAACCTAGCGATGCCAATACCAATAGCACCACCCTCCTCTCAGACGAGACCGAC
GATAGGCCTAAAGGAAACACGAATCAAGAAACAGGCACCTCAAAGCAACTTGAATACGAG
TCTAATCCTTCGGTTGCTGAGCCCGACCAGAGAGAAAAGATGGAGGGTGTTCCAGGCTCT
GCCCTAGATGCCAGTAAAAAATCCTCTCCAAGAAGAGCGTTTTCACGCCCTATAAAAACT
AACCTGAGGGTTGCCGAGTCGTCTGCATTTCTAGCATATGTCAAGCCAAGCACCCCAGCC
ACCAGCTCATTTGACAGCGAATTACAAAGGGGTGGCAGCCGATTAGATTCCTTGGATAAC
CAGGGTAATTGCTCTAGCGCAACCGATAGAAGTGACACTGGTACTGATGTAAATATTCGG
AGTAAAGAAGCTTTTGAGATGCCTGCGCAGTACCCTATGGTATGGTTTTCTTCCTCTAAC
ATGCATATGGAGCGAAGCAGCGAAGGCCATAATGATACTTCAGGAACTCCACCTGCATAC
CATTTCCCATTTTATTACCCAGGGATGGTAGAGCACAACATGGCACTTTCGTCGGCGCAA
GATTTTCAAGCAAACATAAACAATGCTCAAGCACATACACCGCCAGCGATGCTTCCTCAG
TACAATGTTTATCCTCAGTGCCATGGTTTACCTGTGATACCATCATTTCAGTTTAATCCT
TCTGGCATGAGTACGCACTCAAGTCATTTACCAACGCAAAATGTGTGGTCATCGGCATCG
AGCACACCACCAGTGCCTGAGGAAACATGCAGTCGCTCTGAAAGGAGGGCTGCAGCACTT
GCCAAGTTCAGGCTGAAGAGGAAAGAGCGCTGCTTTGACAAGAAGGTGAGGTATGTGAAC
CGGAAGAAACTCGCTGAAACGAGGCCAAGGGTGCGAGGTCAGTTTGTTAGACAGCCAACC
AATACGGATGTCATCAGCATTGGAGATGATATATCTGAAGACGAAGATGACGATCCATCG
TCCAGGGAGGTAGATATGGTTTCTTCTCCAGAGTAG

Peptide Sequence

PEP ID

Zm00001d051114_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:4:143867751:143870497:1 gene:Zm00001d051114 transcript:Zm00001d051114_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:PseudoARR-B transcription factor%3B Two-component response regulator-like PRR1

Sequence

MSNRDEVSVVVKCLRLGAAEYLVKPLRTNELLNLWTHVWRRRRMLGLPEKNFFNDNFELV
LSEPSDANTNSTTLLSDETDDRPKGNTNQETGTSKQLEYESNPSVAEPDQREKMEGVPGS
ALDASKKSSPRRAFSRPIKTNLRVAESSAFLAYVKPSTPATSSFDSELQRGGSRLDSLDN
QGNCSSATDRSDTGTDVNIRSKEAFEMPAQYPMVWFSSSNMHMERSSEGHNDTSGTPPAY
HFPFYYPGMVEHNMALSSAQDFQANINNAQAHTPPAMLPQYNVYPQCHGLPVIPSFQFNP
SGMSTHSSHLPTQNVWSSASSTPPVPEETCSRSERRAAALAKFRLKRKERCFDKKVRYVN
RKKLAETRPRVRGQFVRQPTNTDVISIGDDISEDEDDDPSSREVDMVSSPE

Transcript Sequence

Transcript ID

Zm00001d051114_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:143867751:143870497:1 gene:Zm00001d051114 gene_biotype:protein_coding transcript_biotype:protein_coding description:PseudoARR-B transcription factor%3B Two-component response regulator-like PRR1

Sequence

CTGCTCCAGCGAAGCACCGCAGGCCGCAGCCGCAGCCGCAGCAGAGAAGAGCAGACGCCA
TCGCCCGCAGCCGCCGCCCCCGGAGAATGGTGCGGGCCGGACCGCGACGGGCGAAGGAGG
GCGCCGCGGCCCCCGGCGGCCCCCGCCGCCGCTGATAGTAGTCTACCTGCTGCTAACCAG
CCATCTGAAGGCACAGTGGTCGCACGCGAGGGGCCCGGATTGATTGGGTGATAGGCGGCG
GGCGCAGATCCACCGACCCCCTCGTCGTGCGCCTGTGTCTCTGGTTCCGGTCCGTGTCCC
CTTGGCCGCTTGGTGGAGGCCGGAGGCGTGGTCGGTGCGTTTGGAGTTTGGGTATGGCGG
GTGGCGGCGAGGGGGATCGCGTGGGTGTCGGGGGAGCCCAGCAGTTCGTGGACCGGAGCA
AGGTGAGGATTCTTCTCTGCGACGGCGACGCCACCAGCTCCCGGGAGGTGCTGCGGCTCC
TCTGCAACTGCTCATACCATGTGACCTGCGCCAAGTCTCCGCGGCAGGTGATCAATATCC
TCAACTACGAGGGCGGCGAGATCGACATCATCCTGGCTGAGGTCGATCTTCCGGTCTCCA
AGTGCTTCAAGATGCTCAACCCCATCATAAGTAGGCTGCATTCCTATACTCTGCCTGCCT
CGTGCCTGTTACTGTGATTGTGCTTGCTGTGACCATCCTCCTGTTCGATGGAACCGTGCA
GTGATGTCCAACAGAGACGAGGTGTCTGTTGTTGTCAAGTGCTTGCGGCTTGGCGCCGCC
GAGTACCTGGTGAAGCCGCTGCGCACGAATGAGTTGCTGAACCTTTGGACCCATGTGTGG
CGGCGGAGACGGATGCTTGGTTTGCCCGAGAAAAACTTCTTCAATGACAACTTCGAGTTG
GTGCTCTCAGAACCTAGCGATGCCAATACCAATAGCACCACCCTCCTCTCAGACGAGACC
GACGATAGGCCTAAAGGAAACACGAATCAAGAAACAGGCACCTCAAAGCAACTTGAATAC
GAGTCTAATCCTTCGGTTGCTGAGCCCGACCAGAGAGAAAAGATGGAGGGTGTTCCAGGC
TCTGCCCTAGATGCCAGTAAAAAATCCTCTCCAAGAAGAGCGTTTTCACGCCCTATAAAA
ACTAACCTGAGGGTTGCCGAGTCGTCTGCATTTCTAGCATATGTCAAGCCAAGCACCCCA
GCCACCAGCTCATTTGACAGCGAATTACAAAGGGGTGGCAGCCGATTAGATTCCTTGGAT
AACCAGGGTAATTGCTCTAGCGCAACCGATAGAAGTGACACTGGTACTGATGTAAATATT
CGGAGTAAAGAAGCTTTTGAGATGCCTGCGCAGTACCCTATGGTATGGTTTTCTTCCTCT
AACATGCATATGGAGCGAAGCAGCGAAGGCCATAATGATACTTCAGGAACTCCACCTGCA
TACCATTTCCCATTTTATTACCCAGGGATGGTAGAGCACAACATGGCACTTTCGTCGGCG
CAAGATTTTCAAGCAAACATAAACAATGCTCAAGCACATACACCGCCAGCGATGCTTCCT
CAGTACAATGTTTATCCTCAGTGCCATGGTTTACCTGTGATACCATCATTTCAGTTTAAT
CCTTCTGGCATGAGTACGCACTCAAGTCATTTACCAACGCAAAATGTGTGGTCATCGGCA
TCGAGCACACCACCAGTGCCTGAGGAAACATGCAGTCGCTCTGAAAGGAGGGCTGCAGCA
CTTGCCAAGTTCAGGCTGAAGAGGAAAGAGCGCTGCTTTGACAAGAAGGTGAGGTATGTG
AACCGGAAGAAACTCGCTGAAACGAGGCCAAGGGTGCGAGGTCAGTTTGTTAGACAGCCA
ACCAATACGGATGTCATCAGCATTGGAGATGATATATCTGAAGACGAAGATGACGATCCA
TCGTCCAGGGAGGTAGATATGGTTTCTTCTCCAGAGTAGTAGTGGAGAGGTCCTCCATGT
GAAAAAATAGACTGCAGATGGTTACTGCTCATCTTGTTACAACTCAGTAGACCTAGGCAA
TACACCCTTTTTGCTCACACACAGTATTACATTTTTGTCCCTAAAACA