Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d051017_T007
CDS Infomation

cds chromosome:B73_RefGen_v4:4:137135061:137140355:1 gene:Zm00001d051017 gene_biotype:protein_coding transcript_biotype:protein_coding description:tRNA (guanine(37)-N1)-methyltransferase 1
Sequence

ATGGAGAAGCTGGATGAGAGCAAGTTCGAGCAGCGGTTAGAGCTCTTGGCGCTCCGCATC
CCCCGTGAGCTCGCCTCCGCAGTTACCCGCCTCCTTCGCTCCGGTTATCTGCTCGACAAG
CCAAGGGTTAAACCTGTAGTTGAGGACCCCGAGGGCGACAAGAACCGGCTCGTCATACTG
TCTGAAAGGATTCAGAAGCCCGATTTATCTGACATGTCACAGCAGGCGCTTGATTCATTG
AAGCAACTATGCAATGTTGAAGTTGTACCTTACACATTGACCCTAGGTTATTCATATTGG
AGTGCAGATCACATTTTGAAGCGAATCCTGCCTGCTGGAGTGGAGGTACCCTCTTCGTTT
GAGACAATTGGTCATGTTGCTCATCTGAACATATCTGATGACTTGCTAGCATATAAAGAT
GTCATAGCAAAGGTTATCTATGACAAAAATTATCCAAGGATTCAGACCGTGGTGAATAAA
GTGGGGACAATAACAAATGAATTTAGAGTCCCGAAGTTTGAGATCTTAGCAGGGAAAAAT
GATATGGTTACTGAAATTAAACAATATGGTGCAACATTCAGACTTGATTATGGTTTGGTC
TACTGGAATTCAAGACTCGAGCATGAGCATATCAGATTAGTTTCCCTGTTCAAGAAAGGA
GATGTTATATGTGACATGTTTGCTGGTATAGGTCCATTTTCAATCCCGTCTGCTCAGAAA
GGTTGTGTTGTATATGCAAATGACTTGAATCCAGATAGTGTTCATTATCTAAGAACTAAT
GCAAAGATTAACAAGGTGGAGGACTATATATTCGCCTACAACATGGATGCTAGAGTGTTC
ATGCAAAAATTGATGACTGTGCCTGGCCTGGAAACTAGATCAGACTCTCAAGTTGCCACT
GATGAATCCTATTCTAAAGAAGGGGTTCCACCTAATGAAATTTCTTCTTCAAATGGAAAC
CATAATGATGTTCGAGAGGACATTAAAAATGGTGCTAATGAATCCTCTGCGGCAAGCACT
ACTACTAAAAAGCGACAACAAACTTCAGAAGAAGGTGATGAACCTGATTGCCAAGATGCA
GATGCTAATAAAACAAAAAGACAAAACAAAAAGAGAGTGAGAGGATTAGGGCCACTGCCA
TCCAAGCCATGGGAACACTTTGATCATGTACTGATGAATCTACCTGCTTCCGCTTTGCAG
TTCCTCGATTGTTTTGATGGTCTCATCCAAAAGAAATACTGGACGGGATCACTACCTTGG
ATACACTGTTATTGTTTCATCCGTTCTTGTGAATCTGAAGAATCAATTCTCTCTGAAGCT
CAGAATAAATTAAGTGCTACAATAGCAGAACCAATATTCCATAGGGTTCGTGATGTTGCA
CCAAACAAGGCTATGTTTTGTTTAAGCTTCAAGCTACCCATGGAGTGTCTTAAGGGGGAC
AGTGAAAATCACATCGAATCAGTTGCCAAGTAG

Peptide Sequence

PEP ID

Zm00001d051017_P007
PEP Infomation

pep chromosome:B73_RefGen_v4:4:137135061:137140355:1 gene:Zm00001d051017 transcript:Zm00001d051017_T007 gene_biotype:protein_coding transcript_biotype:protein_coding description:tRNA (guanine(37)-N1)-methyltransferase 1
Sequence

MEKLDESKFEQRLELLALRIPRELASAVTRLLRSGYLLDKPRVKPVVEDPEGDKNRLVIL
SERIQKPDLSDMSQQALDSLKQLCNVEVVPYTLTLGYSYWSADHILKRILPAGVEVPSSF
ETIGHVAHLNISDDLLAYKDVIAKVIYDKNYPRIQTVVNKVGTITNEFRVPKFEILAGKN
DMVTEIKQYGATFRLDYGLVYWNSRLEHEHIRLVSLFKKGDVICDMFAGIGPFSIPSAQK
GCVVYANDLNPDSVHYLRTNAKINKVEDYIFAYNMDARVFMQKLMTVPGLETRSDSQVAT
DESYSKEGVPPNEISSSNGNHNDVREDIKNGANESSAASTTTKKRQQTSEEGDEPDCQDA
DANKTKRQNKKRVRGLGPLPSKPWEHFDHVLMNLPASALQFLDCFDGLIQKKYWTGSLPW
IHCYCFIRSCESEESILSEAQNKLSATIAEPIFHRVRDVAPNKAMFCLSFKLPMECLKGD
SENHIESVAK

Transcript Sequence

Transcript ID

Zm00001d051017_T007
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:137135061:137140355:1 gene:Zm00001d051017 gene_biotype:protein_coding transcript_biotype:protein_coding description:tRNA (guanine(37)-N1)-methyltransferase 1
Sequence

AGAGGGAGGAGTTCAAGAGAGAGAGAGTGTGTGAGAGAGAAAGAGAGGGAGAGCCGGAGA
GGGGCTATGGAGAAGCTGGATGAGAGCAAGTTCGAGCAGCGGTTAGAGCTCTTGGCGCTC
CGCATCCCCCGTGAGCTCGCCTCCGCAGTTACCCGCCTCCTTCGCTCCGGTTATCTGCTC
GACAAGCCAAGGGTTAAACCTGTAGTTGAGGACCCCGAGGGCGACAAGAACCGGCTCGTC
ATACTGTCTGAAAGGATTCAGAAGCCCGATTTATCTGACATGTCACAGCAGGCGCTTGAT
TCATTGAAGCAACTATGCAATGTTGAAGTTGTACCTTACACATTGACCCTAGGTTATTCA
TATTGGAGTGCAGATCACATTTTGAAGCGAATCCTGCCTGCTGGAGTGGAGGTACCCTCT
TCGTTTGAGACAATTGGTCATGTTGCTCATCTGAACATATCTGATGACTTGCTAGCATAT
AAAGATGTCATAGCAAAGGTTATCTATGACAAAAATTATCCAAGGATTCAGACCGTGGTG
AATAAAGTGGGGACAATAACAAATGAATTTAGAGTCCCGAAGTTTGAGATCTTAGCAGGG
AAAAATGATATGGTTACTGAAATTAAACAATATGGTGCAACATTCAGACTTGATTATGGT
TTGGTCTACTGGAATTCAAGACTCGAGCATGAGCATATCAGATTAGTTTCCCTGTTCAAG
AAAGGAGATGTTATATGTGACATGTTTGCTGGTATAGGTCCATTTTCAATCCCGTCTGCT
CAGAAAGGTTGTGTTGTATATGCAAATGACTTGAATCCAGATAGTGTTCATTATCTAAGA
ACTAATGCAAAGATTAACAAGGTGGAGGACTATATATTCGCCTACAACATGGATGCTAGA
GTGTTCATGCAAAAATTGATGACTGTGCCTGGCCTGGAAACTAGATCAGACTCTCAAGTT
GCCACTGATGAATCCTATTCTAAAGAAGGGGTTCCACCTAATGAAATTTCTTCTTCAAAT
GGAAACCATAATGATGTTCGAGAGGACATTAAAAATGGTGCTAATGAATCCTCTGCGGCA
AGCACTACTACTAAAAAGCGACAACAAACTTCAGAAGAAGGTGATGAACCTGATTGCCAA
GATGCAGATGCTAATAAAACAAAAAGACAAAACAAAAAGAGAGTGAGAGGATTAGGGCCA
CTGCCATCCAAGCCATGGGAACACTTTGATCATGTACTGATGAATCTACCTGCTTCCGCT
TTGCAGTTCCTCGATTGTTTTGATGGTCTCATCCAAAAGAAATACTGGACGGGATCACTA
CCTTGGATACACTGTTATTGTTTCATCCGTTCTTGTGAATCTGAAGAATCAATTCTCTCT
GAAGCTCAGAATAAATTAAGTGCTACAATAGCAGAACCAATATTCCATAGGGTTCGTGAT
GTTGCACCAAACAAGGCTATGTTTTGTTTAAGCTTCAAGCTACCCATGGAGTGTCTTAAG
GGGGACAGTGAAAATCACATCGAATCAGTTGCCAAGTAGACCATGCCATGCTGATATTGT
GCTCCTGAAGTTTTTACTCATCCACCTGCAGTTTTTTTTGGAGCTTTACCAAATAAATAG
CAAATGTGCTGATGATTCTGGGGTGTCATATAACCATTGAAGATGTTGGTGGATGAATCA
AGACGCTGGTAACATCTGATTCAAAGCGTGGTGCCATCGGTTTAGTTTACAGGAAGTTCA
CTGTCATGTTTTTTTTTTTGGGTTTAGTTTACAGGAAGTTCCCTGTCATCTAATGTATTG
ACTTTTTACATGGTTTTGTTATTGATTTGAAGAAAATTTGGTCAGAACTCAGGACCGTTT
GTAGTACTTGTCACTCGAGCTCTCTGTACCCAAGTGAAAGTGTCAGGTGTTCGAGGAAAT
GTTATGTTAAAAACATCGAAGTGTCTCTTAGACTGCTACTAGTCGGTTGCCCGTGCGTTG
CGACGGTTTACAACAATACCCACGTAAACTATCCATAAATTTTTTTAAGATTT