Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d050985_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:4:135266834:135270002:-1 gene:Zm00001d050985 gene_biotype:protein_coding transcript_biotype:protein_coding description:Regulator of chromosome condensation (RCC1) family protein
Sequence

ATGCAGTGCCCCATGGACACTGCTGCTAGTGGAACCTCGCCAGTGATGCAATTCCATAGC
AATGCTGATGAGTCTATCGCCCATTCATCTCCATTGGCAACATTAATACAACGTTCACAG
CGCCATTGCTATGGGGATGGATCCCCAGGCGAATTTCCCCTTGCTGTGAGCCCCTCCATT
GTTCTCCATGTGCTCTCATCTTGTGATCTAGGTCCGAAAGATCTCGCCAATCTGGAGGCT
ACATGCGTATTTTTCGGCAAACCTGCAAGTTTTGCACCAGACTTTGCATTGTCACTTCCG
GAGCTTGCGGCATTTGATATGTGCCAGAAAAGGACCATGTTTAAGCAGATGAAGCAAGAA
GATCAGGAGTGTCTGAAACAACGGTGTGGAGGCTCTTGGAAGCATGTTCTTGGGTACATT
CTGGTTAGGGAGAAGAATGGTTCTCGGGTGATTGCCGGGCCAGGCCATAGCATCATTATC
ACCTCAAATGGAGATGTATATTCGTTTGGAGCAAACTGCTCCGGTCAGCTTGGCCTTGGG
GATTCAGAAGACCGGTTCAAGCCATGTGTTATTAGGTCTCTACAAGGCATCAGAATCACA
CAAGCTGCAGTTGGTTCGAGATGCACAATGCTTGTGAGTGACACAGGAAGCGTCTACTCA
TTTGGGAAGGAGGATTTCAGGGTCGCAGAACTAGTTGACGGTGCTCATTTTCAGATCACA
ACTCCTAGGATTGAGGAGTCACTGAAGGGTGTGTTTGTAGTTCAAGCAGCCATAGGGGGT
TACTTCTCTGCAGTTCTGTCCAGAGAGGGTCGAGTGTACACCTTCTCATGGGGCAAAGCC
GAGAGGCTTGGCCACAGTTCGGATCCTTCAGATGTCGAGCCTCGTCTTCTCCCTGGACTC
GAGGATGTTCCTGTCGCATACATCTCTGCAGGAAATTGCTACCTTCTTATGCTGGCCTAC
CAGCCAAATGGAATGTCTGTGTACTCTGTAGGCTGTGGTTTAGGGGGCAAGCTTGGGCAT
GGATGCAAAACCAACAATGGGATGCCCAAATTGGTTGAACAGTTCCAGTCCATGAGCTTC
AAACCAGTTTCAATAGCAGCTGGCACTTGGCATGCCGTGGCCCTTGGCGCTGACGGGCGT
GTGTGCACCTGGGGCTGGGGCCACACCGGTTGTCTGGGGCACGGCGATGAGGAGTGCAGG
GCTGTTCCCACAGTGGTAGAAGGATTACGCGACGTGAAGGCGGTTCATGTCTCCACGGGT
GAATACACGACGTTTGTCGTCGCTGAGAATGGGGACGTCTACTCCTTTGGATCCGGTGAA
TCCTTGGCTTTCCAGTTGGACGATGAGGCGGAGGAGGAACCGGATTCCTCGACACCGAGC
ATAGTCAGCTCGCTCAAGGATCTGAACAAGAAGGTCGTGCAGATCAGCCACACAAACGCC
TCGTACTGGATGAACTCGGAAATGGGCCACCCGCACACATTTGCGGTCATGGACTCCGGC
GACGTCTGTGCCTTCGGAGGAGGGGTCAGAGGCCAGCTCGGCGTGAAGCTGCATGAGGGC
GTCGAAAAAGTGCGCGTCCCGATGAATGTTCCAATCGGTCTCAATTGA

Peptide Sequence

PEP ID

Zm00001d050985_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:4:135266834:135270002:-1 gene:Zm00001d050985 transcript:Zm00001d050985_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:Regulator of chromosome condensation (RCC1) family protein
Sequence

MQCPMDTAASGTSPVMQFHSNADESIAHSSPLATLIQRSQRHCYGDGSPGEFPLAVSPSI
VLHVLSSCDLGPKDLANLEATCVFFGKPASFAPDFALSLPELAAFDMCQKRTMFKQMKQE
DQECLKQRCGGSWKHVLGYILVREKNGSRVIAGPGHSIIITSNGDVYSFGANCSGQLGLG
DSEDRFKPCVIRSLQGIRITQAAVGSRCTMLVSDTGSVYSFGKEDFRVAELVDGAHFQIT
TPRIEESLKGVFVVQAAIGGYFSAVLSREGRVYTFSWGKAERLGHSSDPSDVEPRLLPGL
EDVPVAYISAGNCYLLMLAYQPNGMSVYSVGCGLGGKLGHGCKTNNGMPKLVEQFQSMSF
KPVSIAAGTWHAVALGADGRVCTWGWGHTGCLGHGDEECRAVPTVVEGLRDVKAVHVSTG
EYTTFVVAENGDVYSFGSGESLAFQLDDEAEEEPDSSTPSIVSSLKDLNKKVVQISHTNA
SYWMNSEMGHPHTFAVMDSGDVCAFGGGVRGQLGVKLHEGVEKVRVPMNVPIGLN

Transcript Sequence

Transcript ID

Zm00001d050985_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:135266834:135270002:-1 gene:Zm00001d050985 gene_biotype:protein_coding transcript_biotype:protein_coding description:Regulator of chromosome condensation (RCC1) family protein
Sequence

CTACTTCCTTAGCTAACTTCCCAGCCCCGACACCTTGGCCGCCGCTCCGTGCGCACCCAG
TTGCTGAGGTTGCAACGCTGCAGCCGGCGAGGATCGGATGAACCACCAACCCCTCCTATA
AATCCTAACCGAGTCCTCTGCTTCTGCTCTCATCCATCTGTAGAGTGCAACATGCAGTGC
CCCATGGACACTGCTGCTAGTGGAACCTCGCCAGTGATGCAATTCCATAGCAATGCTGAT
GAGTCTATCGCCCATTCATCTCCATTGGCAACATTAATACAACGTTCACAGCGCCATTGC
TATGGGGATGGATCCCCAGGCGAATTTCCCCTTGCTGTGAGCCCCTCCATTGTTCTCCAT
GTGCTCTCATCTTGTGATCTAGGTCCGAAAGATCTCGCCAATCTGGAGGCTACATGCGTA
TTTTTCGGCAAACCTGCAAGTTTTGCACCAGACTTTGCATTGTCACTTCCGGAGCTTGCG
GCATTTGATATGTGCCAGAAAAGGACCATGTTTAAGCAGATGAAGCAAGAAGATCAGGAG
TGTCTGAAACAACGGTGTGGAGGCTCTTGGAAGCATGTTCTTGGGTACATTCTGGTTAGG
GAGAAGAATGGTTCTCGGGTGATTGCCGGGCCAGGCCATAGCATCATTATCACCTCAAAT
GGAGATGTATATTCGTTTGGAGCAAACTGCTCCGGTCAGCTTGGCCTTGGGGATTCAGAA
GACCGGTTCAAGCCATGTGTTATTAGGTCTCTACAAGGCATCAGAATCACACAAGCTGCA
GTTGGTTCGAGATGCACAATGCTTGTGAGTGACACAGGAAGCGTCTACTCATTTGGGAAG
GAGGATTTCAGGGTCGCAGAACTAGTTGACGGTGCTCATTTTCAGATCACAACTCCTAGG
ATTGAGGAGTCACTGAAGGGTGTGTTTGTAGTTCAAGCAGCCATAGGGGGTTACTTCTCT
GCAGTTCTGTCCAGAGAGGGTCGAGTGTACACCTTCTCATGGGGCAAAGCCGAGAGGCTT
GGCCACAGTTCGGATCCTTCAGATGTCGAGCCTCGTCTTCTCCCTGGACTCGAGGATGTT
CCTGTCGCATACATCTCTGCAGGAAATTGCTACCTTCTTATGCTGGCCTACCAGCCAAAT
GGAATGTCTGTGTACTCTGTAGGCTGTGGTTTAGGGGGCAAGCTTGGGCATGGATGCAAA
ACCAACAATGGGATGCCCAAATTGGTTGAACAGTTCCAGTCCATGAGCTTCAAACCAGTT
TCAATAGCAGCTGGCACTTGGCATGCCGTGGCCCTTGGCGCTGACGGGCGTGTGTGCACC
TGGGGCTGGGGCCACACCGGTTGTCTGGGGCACGGCGATGAGGAGTGCAGGGCTGTTCCC
ACAGTGGTAGAAGGATTACGCGACGTGAAGGCGGTTCATGTCTCCACGGGTGAATACACG
ACGTTTGTCGTCGCTGAGAATGGGGACGTCTACTCCTTTGGATCCGGTGAATCCTTGGCT
TTCCAGTTGGACGATGAGGCGGAGGAGGAACCGGATTCCTCGACACCGAGCATAGTCAGC
TCGCTCAAGGATCTGAACAAGAAGGTCGTGCAGATCAGCCACACAAACGCCTCGTACTGG
ATGAACTCGGAAATGGGCCACCCGCACACATTTGCGGTCATGGACTCCGGCGACGTCTGT
GCCTTCGGAGGAGGGGTCAGAGGCCAGCTCGGCGTGAAGCTGCATGAGGGCGTCGAAAAA
GTGCGCGTCCCGATGAATGTTCCAATCGGTCTCAATTGATCCCCTTCCACCAGCATTCGC
CTGAACATTTTGCGATGGCACTCTGCTTCCGCGAACATTCTGTTTGGGCCTTCAGACCAG
TGGCGTAAGCTTAGACATGCTAGGATGTGAATATTAGGGATGATTTGTTTTTATCTGAAC
TCTTCGAAGTGATATAGATCGTCTG