Plant GARDEN
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d050929_T006
CDS Infomation

cds chromosome:B73_RefGen_v4:4:132081506:132105909:-1 gene:Zm00001d050929 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA mismatch repair protein PMS1
Sequence

ATGGTTGTGCTTAGAACTCAAGGAAGCAGTTCGATGAAAGACACTATCATTACTGTATTT
GGTCCAAACACTTTTAAATGTCTTGAGCCCTTCAGTGTTACCACCTCGGATGGCTGCCAG
ATAGAGGGCTTTCTTTCAAAACCTGGACCTGGTACTGGTCGCAGTTCAGGAGATAGACAA
TTTTTCTATGTGAATGGCAGACCTATTGATATGCCAAAGGTCACAAAACTTGTCAACGAG
CTATACAGAAGCTCAAATGCCAAACAATATCCTGTGGTAATTCTAGATTTTCATATTCCA
ACTACATCCTATGATGTGAATATTGCACCTGATAAGAGAAAAGTTTTCTTCTCATCTGAA
AGCATGATTCTGCAATCTTTGCGGGAAACTGTTGAAAACCTGTACTCCCCTCAACAATGC
AGTTTCTCAGTCAATCACATCAAAGATCCTGAAAAGGAAGGGGATGCTGTTACTGATAGG
CATAATGAAGACACAAATGCAATCGTAATGGTGAATGTTCCATCTTACTACAACAATGAT
GACAATGAAGAAACAGACAATGAGGATCAGGTTTCTCCAGAGAACCAGAAATTGCCTTCA
GTGGCTAGAGATGCGAGCCCCCTGTCAGGAGGCACAACCACTCAGGCTGATAGATCTGCT
TGGCTTCCATCCTTTGCATATGACCAGCCAAAAAGATCGCCTAAAGAAGGAAGAAGTTTG
GTATTGGGTAGAAATTGTTTTAGAACTGGGCTTGCTGCAAAGCCAACTCATTCAAGTACT
GTTCAGTCTTCTCTCCTGAACTTTGTATCACTAAACAAGCGGAAACACGAAGATGATTGC
ACTCTTATTTCTGAAGCTGCAGTGCTGAGAAGAGAGACATGCTCTGAACATATGAGGAGA
TCAAGTTTAGAAGCAAACTTTGTTACACCAAACAAGCAGAACCATGAGGATGATTGCATT
ATTTCTGAGTCTCCAGTGCTGAGAAGTGGGACATGCTCAGAACTATACAAGAGGACAAGT
TTAGAAGTCAATTTTCCATCACCAAATAAGCAGAAGCATGATGACAATTGCACTCTTATT
TCTGAAATCCCTGTGTTGAGAAGAAGGACAAATTCAGAACAAGCGAGAGGAACAAGTTTA
GAAGCAAATTCAGCACCTGAGTTCAATTTACCTCTGGAAACAAACTCTTTAAAACAGCAC
TCCTCACAATATTTTGGATCTGTGAGGACAGATGTTTCACCACAGCATTCTAAACAACCT
AATATTGTGACCATTGGGGCAGGGGTAACAGGTCCATGTGATGTTGACACTACAGAATCT
GATATGGATCAACAGTGTGGTCGATGCCATTCAGCTTCTGGTGCTCCCAACAAATATTCA
GAATCACGACATCAGAATGCATTGGCTGATAGTCCTTTGCCTGATGCTCAGGATTATGGT
GATGGTGCTGCAGTATGTTATGCATCTGTACAATATCCCATTATTCAATTTACGGTTGCC
GAGCTTAGGAGAAGAAGAAAGAATTGTTTTATGATATCTCATATAAATAAATCATATTGT
CTCGAGAAAACAACAAGGTGCTATAAAGCTGCAACACTGGACATCACTGTACCCTTAGCT
GACGAGGCAAAATCAAACTCATTAGCTGCAGCCACCAATGAGTTGGACAGGCTTTTCAGT
AAACATGATTTTCGAGAAATGGAGGTTGTTGGACAATTTAATCTTGGTTTTATCATTGGA
AAGCTTGGCCAGGATCTGTTTATTGTAGATCAGCATGCTTCTGATGAGAAGTACAACTTT
GAGTGCCTTTCGCAGTCTACAATTTTAAACGTACAGCCTCTTCTCGAGCCACTGAGACTT
GATCTATCACCAGAGGAAGAAGTAATTGTTTCTATGAACATGAGCACCATCAGAAAAAAT
GGTTTCGTTTTGGCAGAAGATTTGCATGCTTCTCCCGGTAACCATTATCTTCTGAAAGCT
GTACCTTTCAGCAAAAATATTACATTTGGTGTTCAAGATGTAAAGGAGTTGATCTCCATG
CTTGCCGATAGTCAAGGAGACTGTTCAATAATCAGTAGCTACAAGCTGGATACAGCCGAC
TCTGTTTGCCCTTCGAGGGTTCGTGCTATGTTGGCTTCTAGGGCTTGCCGAATGTCTACT
ATGATAGGCGATCCACTAACAAAAGCTGAGATGAAGAAGATACTTAAAAACATGGCTGGA
TTGAGGTCCCCTTGGAACTGCCCACACGGGAGGCCAACAATGCGGCACCTAGCTGACCTG
CGTACTATGAAGGCGAAAGATATCGCGTTTAAACGCTAG

Peptide Sequence

PEP ID

Zm00001d050929_P006
PEP Infomation

pep chromosome:B73_RefGen_v4:4:132081506:132105909:-1 gene:Zm00001d050929 transcript:Zm00001d050929_T006 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA mismatch repair protein PMS1
Sequence

MVVLRTQGSSSMKDTIITVFGPNTFKCLEPFSVTTSDGCQIEGFLSKPGPGTGRSSGDRQ
FFYVNGRPIDMPKVTKLVNELYRSSNAKQYPVVILDFHIPTTSYDVNIAPDKRKVFFSSE
SMILQSLRETVENLYSPQQCSFSVNHIKDPEKEGDAVTDRHNEDTNAIVMVNVPSYYNND
DNEETDNEDQVSPENQKLPSVARDASPLSGGTTTQADRSAWLPSFAYDQPKRSPKEGRSL
VLGRNCFRTGLAAKPTHSSTVQSSLLNFVSLNKRKHEDDCTLISEAAVLRRETCSEHMRR
SSLEANFVTPNKQNHEDDCIISESPVLRSGTCSELYKRTSLEVNFPSPNKQKHDDNCTLI
SEIPVLRRRTNSEQARGTSLEANSAPEFNLPLETNSLKQHSSQYFGSVRTDVSPQHSKQP
NIVTIGAGVTGPCDVDTTESDMDQQCGRCHSASGAPNKYSESRHQNALADSPLPDAQDYG
DGAAVCYASVQYPIIQFTVAELRRRRKNCFMISHINKSYCLEKTTRCYKAATLDITVPLA
DEAKSNSLAAATNELDRLFSKHDFREMEVVGQFNLGFIIGKLGQDLFIVDQHASDEKYNF
ECLSQSTILNVQPLLEPLRLDLSPEEEVIVSMNMSTIRKNGFVLAEDLHASPGNHYLLKA
VPFSKNITFGVQDVKELISMLADSQGDCSIISSYKLDTADSVCPSRVRAMLASRACRMST
MIGDPLTKAEMKKILKNMAGLRSPWNCPHGRPTMRHLADLRTMKAKDIAFKR

Transcript Sequence

Transcript ID

Zm00001d050929_T006
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:132081506:132105909:-1 gene:Zm00001d050929 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA mismatch repair protein PMS1
Sequence

GCCGACAACGGATGCGGTATATCTCCCTCCAACTTCCGGGCTCTTGCTCTTAAGCACCAC
ACGTCCAAGATATCAGATTTCTCTGACCTTGGATCCCTGGTTACCTTCGGGTTCCGGGGC
GAAGCTCTGAGCTCGCTCTGCGCGCTTGGGAAACTGACGGTTGAGACGAGGAGCAAGGAT
GAGCTAGTTGGGACGCATTTGGAGTTTGAGCACTCTGGCGTGGTGGTTAGTGAAAGGAAG
ACCGCACGGCAGGTTGGAACCACGGTGACAGTAGAAAAGTTGTTCTCCACCTTGCCGGTC
CGGAGCAAGGAATTTAGCAGGAACATTCGGAAGGAATACGGGAAAGTGATCTCGCTGCTG
AACGTGAGTTTTCATGTTCCAGTTTATAAGTTCTTTTTGGCATGTTTGAATTGACCCTAA
GGAGCTTGCCAAATGGTTAAGGTAGCTGTCCCCCAGTTATGTTACTGATTATTACATCTT
ACCTATGTTAGGCTTATGCATTGATTGCCAAAGGGGTCAGATTACTCTGCACTAATACTG
TTGGAAAAAATTCTAAAATGGTTGTGCTTAGAACTCAAGGAAGCAGTTCGATGAAAGACA
CTATCATTACTGTATTTGGTCCAAACACTTTTAAATGTCTTGAGCCCTTCAGTGTTACCA
CCTCGGATGGCTGCCAGATAGAGGGCTTTCTTTCAAAACCTGGACCTGGTACTGGTCGCA
GTTCAGGAGATAGACAATTTTTCTATGTGAATGGCAGACCTATTGATATGCCAAAGGTCA
CAAAACTTGTCAACGAGCTATACAGAAGCTCAAATGCCAAACAATATCCTGTGGTAATTC
TAGATTTTCATATTCCAACTACATCCTATGATGTGAATATTGCACCTGATAAGAGAAAAG
TTTTCTTCTCATCTGAAAGCATGATTCTGCAATCTTTGCGGGAAACTGTTGAAAACCTGT
ACTCCCCTCAACAATGCAGTTTCTCAGTCAATCACATCAAAGATCCTGAAAAGGAAGGGG
ATGCTGTTACTGATAGGCATAATGAAGACACAAATGCAATCGTAATGGTGAATGTTCCAT
CTTACTACAACAATGATGACAATGAAGAAACAGACAATGAGGATCAGGTTTCTCCAGAGA
ACCAGAAATTGCCTTCAGTGGCTAGAGATGCGAGCCCCCTGTCAGGAGGCACAACCACTC
AGGCTGATAGATCTGCTTGGCTTCCATCCTTTGCATATGACCAGCCAAAAAGATCGCCTA
AAGAAGGAAGAAGTTTGGTATTGGGTAGAAATTGTTTTAGAACTGGGCTTGCTGCAAAGC
CAACTCATTCAAGTACTGTTCAGTCTTCTCTCCTGAACTTTGTATCACTAAACAAGCGGA
AACACGAAGATGATTGCACTCTTATTTCTGAAGCTGCAGTGCTGAGAAGAGAGACATGCT
CTGAACATATGAGGAGATCAAGTTTAGAAGCAAACTTTGTTACACCAAACAAGCAGAACC
ATGAGGATGATTGCATTATTTCTGAGTCTCCAGTGCTGAGAAGTGGGACATGCTCAGAAC
TATACAAGAGGACAAGTTTAGAAGTCAATTTTCCATCACCAAATAAGCAGAAGCATGATG
ACAATTGCACTCTTATTTCTGAAATCCCTGTGTTGAGAAGAAGGACAAATTCAGAACAAG
CGAGAGGAACAAGTTTAGAAGCAAATTCAGCACCTGAGTTCAATTTACCTCTGGAAACAA
ACTCTTTAAAACAGCACTCCTCACAATATTTTGGATCTGTGAGGACAGATGTTTCACCAC
AGCATTCTAAACAACCTAATATTGTGACCATTGGGGCAGGGGTAACAGGTCCATGTGATG
TTGACACTACAGAATCTGATATGGATCAACAGTGTGGTCGATGCCATTCAGCTTCTGGTG
CTCCCAACAAATATTCAGAATCACGACATCAGAATGCATTGGCTGATAGTCCTTTGCCTG
ATGCTCAGGATTATGGTGATGGTGCTGCAGTATGTTATGCATCTGTACAATATCCCATTA
TTCAATTTACGGTTGCCGAGCTTAGGAGAAGAAGAAAGAATTGTTTTATGATATCTCATA
TAAATAAATCATATTGTCTCGAGAAAACAACAAGGTGCTATAAAGCTGCAACACTGGACA
TCACTGTACCCTTAGCTGACGAGGCAAAATCAAACTCATTAGCTGCAGCCACCAATGAGT
TGGACAGGCTTTTCAGTAAACATGATTTTCGAGAAATGGAGGTTGTTGGACAATTTAATC
TTGGTTTTATCATTGGAAAGCTTGGCCAGGATCTGTTTATTGTAGATCAGCATGCTTCTG
ATGAGAAGTACAACTTTGAGTGCCTTTCGCAGTCTACAATTTTAAACGTACAGCCTCTTC
TCGAGCCACTGAGACTTGATCTATCACCAGAGGAAGAAGTAATTGTTTCTATGAACATGA
GCACCATCAGAAAAAATGGTTTCGTTTTGGCAGAAGATTTGCATGCTTCTCCCGGTAACC
ATTATCTTCTGAAAGCTGTACCTTTCAGCAAAAATATTACATTTGGTGTTCAAGATGTAA
AGGAGTTGATCTCCATGCTTGCCGATAGTCAAGGAGACTGTTCAATAATCAGTAGCTACA
AGCTGGATACAGCCGACTCTGTTTGCCCTTCGAGGGTTCGTGCTATGTTGGCTTCTAGGG
CTTGCCGAATGTCTACTATGATAGGCGATCCACTAACAAAAGCTGAGATGAAGAAGATAC
TTAAAAACATGGCTGGATTGAGGTCCCCTTGGAACTGCCCACACGGGAGGCCAACAATGC
GGCACCTAGCTGACCTGCGTACTATGAAGGCGAAAGATATCGCGTTTAAACGCTAGGCCC
TGTTGGCTGCCGGCCTGCCGCGCGTGGGGGGCCTACGCTCAACGGAAGGATGTTTCTATG
CTCTTCCGCTTTATGTTGAAGAATACAAGAAGTGCATATGTGCCCCGCCCCCGCTTGTAA
ATTACGGCGTACGCACGTCGCGCCGCCCCCGCATGCAAGGTCCATTTGTTTGTTTGTTTT
TTGTCAGAAGGAATACCTGTGGTGATATTTATGTCCAGTCTCCAGGGATGTATGGTGTTC
TGTTTTGGCAAATAGAAGCTTGTT