Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d050907_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:4:129650946:129657013:1 gene:Zm00001d050907 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGACGGACTGCCAGGTGGTGGCCATGAAAAAGGCGTACGCCAGGATCATGCTCAACATG
GCGCAGGAGTCGGCGGCGCGGGTGCTGACGGCGGAGCGTCGAGCCGTGGCCCTCGCGGCC
AGTCTCGAGGCCGCCAAGGAGGACGGCGTCGCCGCGCTCCTGCGGCTCAAGGCCATCATG
GAAGTCAGGATAAAAGAGAAAGAACTGGAATCTTTGGTGCATGTTAAGATGATCAAGGAA
CTAGAAGAGCAATTGAATGGTTCACAAAATGCCATGGCCTCTCTTAAGGTTGAGCTGCAG
AGGGCAAATACTGAATTAGAGCTGACAAGGAAAACTTTAGCTGATGAAAGAATGAATAGC
CTTCCCACATCCAATAATGTTTATTATTCTAATAAAAACGTCAGCCCTTGTTCTAAGATA
CATCCACAAGGAGGAAATATATTGTTAAAGAATAAAAAAAACGCTGACAACAGTGATGAC
ACTTGCCTTGTTCTGATAACCGAGGAGAATGAAGCAGTGGACAAATTGGAGGACAAGGAT
CGTCGCAGTCCTGATCTACCATCATTCATGAAAAGAAATAAGAAACCAAAGTTCTGTCAT
AATGGGTGTACACAGCGTATCCATGCACTTAAACAGCAGACTCAAAGTACAGATGCATTC
CTGAAGCAAAATCAGAAGCAGGCCACTGCATTCAATAGCCACTCAAAGGCCAGAAAGAAA
AATGCTGCCAAAAACTCATGCCACACAAGGTCCGTCACGGAGCAGATACTTCAAACGAAA
TTTCTTGGTAAGTTCAAGCGCAAGAGAGGTAGAAGAAACAGGCCTAGCTATAAGCATGAT
AATTCCAGTGAGCACGGGGAAGCAGAATACAAGTTATCTGATAGATCTGAATCTGACGGA
AATGGCTGCTTGCTGCTACTTCAGGCACTTGAACAGGATCTTTCACCTCCAAAGTTGTCC
ACTGAACATGATGGGGAGGCCTTAACTGACCTGAAGGAAGATTTCGAAATGAGCGGGGGG
GATGCTGAGTTAAGTCGGTGTACTGCTTTCTCGGAACTGGTTAATGTACTTGCAGTCAAC
AGTGTGCAAATCAAAAGAAGAAAAAGAACAAAGACTGTCAGGGTTTTGGAAGTTGATTTT
TCCGATACTAAAAGTGTTCCTGAACCAGCTAACACCCAGCTTAGGACCAGTTCGAAAAGC
ATGTCTGGTAATCAATCGGTCTCTGAGATGACTGAGAATCGCTCTGATACACCCATCAGA
AACAGTAGCCCTTTCTTGAAATGTGCTACTGCAAACTTAATGCATCAGATTGCTGCTGGT
AATGGTCAATTTGATCCTGAAATCGGCTCTGCAGTGTCCCTTCAGTCGACCAAAAGTGAA
ACTACAGATTATGGTAACTTGGTGGTGGACCAGCAGGAGCTGATAACACCAAATAATAAT
ACTACAAGCTTGAAAGAAGTAAATGAGGATGGAAGCTGCAGTTTGGCTTCACCTAAGGCT
GATGCTTCGACTCCTGTGCAAGCTTTAGAGAAATATGATATTTCAGTTGGCAGCTCCCTG
AACAAAGAAGAGCATACAAAGGCATCTTGTGGAGCTTCCATACAAGCTGAAGGTGCCAGA
CAAATCAAATACACATTCAATCGCAGAAAGCGCAAGGGTATGTCTATTGACAGCACCCCT
CAGCGTGCTGTCCCTGAGGAGAGCAGTGACCTGTGTAGTCCAACTAACAAGCAAAAGCTT
CACCCCGATTGTGTGGAACAGGATCATTTGATAGATTCTCCACAAGGCCACAGTCAACTA
GTTCAGGTTGCCGAACAGCTCATTTTGTTGTCAGAGCATATGTGA

Peptide Sequence

PEP ID

Zm00001d050907_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:4:129650946:129657013:1 gene:Zm00001d050907 transcript:Zm00001d050907_T001 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MTDCQVVAMKKAYARIMLNMAQESAARVLTAERRAVALAASLEAAKEDGVAALLRLKAIM
EVRIKEKELESLVHVKMIKELEEQLNGSQNAMASLKVELQRANTELELTRKTLADERMNS
LPTSNNVYYSNKNVSPCSKIHPQGGNILLKNKKNADNSDDTCLVLITEENEAVDKLEDKD
RRSPDLPSFMKRNKKPKFCHNGCTQRIHALKQQTQSTDAFLKQNQKQATAFNSHSKARKK
NAAKNSCHTRSVTEQILQTKFLGKFKRKRGRRNRPSYKHDNSSEHGEAEYKLSDRSESDG
NGCLLLLQALEQDLSPPKLSTEHDGEALTDLKEDFEMSGGDAELSRCTAFSELVNVLAVN
SVQIKRRKRTKTVRVLEVDFSDTKSVPEPANTQLRTSSKSMSGNQSVSEMTENRSDTPIR
NSSPFLKCATANLMHQIAAGNGQFDPEIGSAVSLQSTKSETTDYGNLVVDQQELITPNNN
TTSLKEVNEDGSCSLASPKADASTPVQALEKYDISVGSSLNKEEHTKASCGASIQAEGAR
QIKYTFNRRKRKGMSIDSTPQRAVPEESSDLCSPTNKQKLHPDCVEQDHLIDSPQGHSQL
VQVAEQLILLSEHM

Transcript Sequence

Transcript ID

Zm00001d050907_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:129650946:129657013:1 gene:Zm00001d050907 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

AACGGAAGCAAGCAGCCAGCTAAAAGGCTCAAGCGCAGCAGCGGCTGCCGCGACGCGCCC
ACCTCCCTCTCCAACTTTCCGTTTGCCACACCTCTATTGCAACCGCCACAACCCCTAGCT
CCAGCAACAACCAACTCCCTCCTCCCCTAATCTCTTCCCACTCCAAAATGACGGACTGCC
AGGTGGTGGCCATGAAAAAGGCGTACGCCAGGATCATGCTCAACATGGCGCAGGAGTCGG
CGGCGCGGGTGCTGACGGCGGAGCGTCGAGCCGTGGCCCTCGCGGCCAGTCTCGAGGCCG
CCAAGGAGGACGGCGTCGCCGCGCTCCTGCGGCTCAAGGCCATCATGGAAGTCAGGATAA
AAGAGAAAGAACTGGAATCTTTGGTGCATGTTAAGATGATCAAGGAACTAGAAGAGCAAT
TGAATGGTTCACAAAATGCCATGGCCTCTCTTAAGGTTGAGCTGCAGAGGGCAAATACTG
AATTAGAGCTGACAAGGAAAACTTTAGCTGATGAAAGAATGAATAGCCTTCCCACATCCA
ATAATGTTTATTATTCTAATAAAAACGTCAGCCCTTGTTCTAAGATACATCCACAAGGAG
GAAATATATTGTTAAAGAATAAAAAAAACGCTGACAACAGTGATGACACTTGCCTTGTTC
TGATAACCGAGGAGAATGAAGCAGTGGACAAATTGGAGGACAAGGATCGTCGCAGTCCTG
ATCTACCATCATTCATGAAAAGAAATAAGAAACCAAAGTTCTGTCATAATGGGTGTACAC
AGCGTATCCATGCACTTAAACAGCAGACTCAAAGTACAGATGCATTCCTGAAGCAAAATC
AGAAGCAGGCCACTGCATTCAATAGCCACTCAAAGGCCAGAAAGAAAAATGCTGCCAAAA
ACTCATGCCACACAAGGTCCGTCACGGAGCAGATACTTCAAACGAAATTTCTTGGTAAGT
TCAAGCGCAAGAGAGGTAGAAGAAACAGGCCTAGCTATAAGCATGATAATTCCAGTGAGC
ACGGGGAAGCAGAATACAAGTTATCTGATAGATCTGAATCTGACGGAAATGGCTGCTTGC
TGCTACTTCAGGCACTTGAACAGGATCTTTCACCTCCAAAGTTGTCCACTGAACATGATG
GGGAGGCCTTAACTGACCTGAAGGAAGATTTCGAAATGAGCGGGGGGGATGCTGAGTTAA
GTCGGTGTACTGCTTTCTCGGAACTGGTTAATGTACTTGCAGTCAACAGTGTGCAAATCA
AAAGAAGAAAAAGAACAAAGACTGTCAGGGTTTTGGAAGTTGATTTTTCCGATACTAAAA
GTGTTCCTGAACCAGCTAACACCCAGCTTAGGACCAGTTCGAAAAGCATGTCTGGTAATC
AATCGGTCTCTGAGATGACTGAGAATCGCTCTGATACACCCATCAGAAACAGTAGCCCTT
TCTTGAAATGTGCTACTGCAAACTTAATGCATCAGATTGCTGCTGGTAATGGTCAATTTG
ATCCTGAAATCGGCTCTGCAGTGTCCCTTCAGTCGACCAAAAGTGAAACTACAGATTATG
GTAACTTGGTGGTGGACCAGCAGGAGCTGATAACACCAAATAATAATACTACAAGCTTGA
AAGAAGTAAATGAGGATGGAAGCTGCAGTTTGGCTTCACCTAAGGCTGATGCTTCGACTC
CTGTGCAAGCTTTAGAGAAATATGATATTTCAGTTGGCAGCTCCCTGAACAAAGAAGAGC
ATACAAAGGCATCTTGTGGAGCTTCCATACAAGCTGAAGGTGCCAGACAAATCAAATACA
CATTCAATCGCAGAAAGCGCAAGGGTATGTCTATTGACAGCACCCCTCAGCGTGCTGTCC
CTGAGGAGAGCAGTGACCTGTGTAGTCCAACTAACAAGCAAAAGCTTCACCCCGATTGTG
TGGAACAGGATCATTTGATAGATTCTCCACAAGGCCACAGTCAACTAGTTCAGGTTGCCG
AACAGCTCATTTTGTTGTCAGAGCATATGTGATGAGAGTTTTGAAACATAAAGCTGAAGG
AATGACTAGTTTGGTGATGTAACATTTAGGAGGCTTCTGATAAGTGAATTTTGTAATATT
CTAAATCCGTTTGATTTCTTTCCTGGCGTAAGAGAGTTCCGGTGGTGACAACTGACAACA
GATGTACCAAGGAAGCAGCTCAACTCGAGGATTGCTACTGTAGCAGAGTGTATAGATTTT
AAATACTATTTAGTTGATGATGACATTGAATTATTGTTTAAGTAGGTGATAAATTTTAGT
TATCGTTATGTAGTTGTGTTATTTATCGTCTCATCAGAATTCAAAAGGGAAAGAATTGCT
CTCTGCATAGATGTATTTAAATTTTG