Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d050304_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:4:80218295:80223462:1 gene:Zm00001d050304 gene_biotype:protein_coding transcript_biotype:protein_coding description:zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein
Sequence

ATGCTGATCGACGGGATGAGGTCCGTGGTCGCCACGGTGAGCGGTTACCACGGCGACGAG
CGGCATAGGCTTGTAAACCTCATTGCGGAGACCGGTGCTAGCTACGTAGGATCAATGAGC
AGATCCATCACCCACCTGGTGTGCTGGAGGCTCGAGGGGAAGAAGTACGACATCGCGAGG
AGGCTGGGGACACGCGTTGTGAGCCACTGGTGGTTCACGGAGTGTCTCAGGGAGGGGAGG
CGCCTCCCAGAGGACCCGTACTTTATGGTAAGTGGTGAAGAAGCAGGGCCAGTCCCAGAG
CTGCCTTCTCGTTCCCGTAAACAAGTCAAGAAAAATGCCATCATGGAGGACAGAGTTTTC
CAAGAGTTACCTGATGATTTCTGGGACACTCCTCGAGCTAGAGCCAGCTATAAAGTTAAG
CTTGATGATTCTGATTCTGATTTTGAGTCTGCCCTGCTAGAACAAGATTCTGTGGGTGAT
GGGAATTCTAAGAAAAATCATTCACCAGACGTTAAGAAAAGGAGAAAGCGTATGAAGCAT
GTCAATACATCAACGGACAGAGATGTCTTAAACCTGCAGGATAATGTGTCAAGTGTCATG
GCAAGACAGTGCCTTCATATCTCAAGTCATAGAACGTCCCAGAGCACATCAAAGCATAAG
GGAAACTTGTCACACTTGCTTCACAATGAAGTTCCTATCCGGATGGGAGAAAGGAACAAT
CTTACTGAAAACTCTGAAAATGATAGTTTGTCTGACAGCTTCAGTGAACCTCAGACTTCA
GATACTCTGTGTATAGAAGCTCAAAGAAAATCAAGTGCACCATCATCATCACTTAGACAA
AGTACCCTAGATTCTCTATATGAATTTGGTGAAACTAGTAGGCATGAACCAGCAGGAAGA
AAAAAACTAGACAACGTTGAATTAAGGGAGACTTCAAGAAGCTTACTTCCATTTGATTTG
TCAGGACAGGAACCAGCTTTCTGTACTCAGGAGCAAGTAGATAAATGTAGCCTTGGCACT
CTAGCTGATAAAAAACCCATGGAAAAATCATCTAATATGGAAAGGCAACCAGAATTATCA
TGGATTAGCAATAGCCTCACTTTGCTCTAG

Peptide Sequence

PEP ID

Zm00001d050304_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:4:80218295:80223462:1 gene:Zm00001d050304 transcript:Zm00001d050304_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein
Sequence

MLIDGMRSVVATVSGYHGDERHRLVNLIAETGASYVGSMSRSITHLVCWRLEGKKYDIAR
RLGTRVVSHWWFTECLREGRRLPEDPYFMVSGEEAGPVPELPSRSRKQVKKNAIMEDRVF
QELPDDFWDTPRARASYKVKLDDSDSDFESALLEQDSVGDGNSKKNHSPDVKKRRKRMKH
VNTSTDRDVLNLQDNVSSVMARQCLHISSHRTSQSTSKHKGNLSHLLHNEVPIRMGERNN
LTENSENDSLSDSFSEPQTSDTLCIEAQRKSSAPSSSLRQSTLDSLYEFGETSRHEPAGR
KKLDNVELRETSRSLLPFDLSGQEPAFCTQEQVDKCSLGTLADKKPMEKSSNMERQPELS
WISNSLTLL

Transcript Sequence

Transcript ID

Zm00001d050304_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:80218295:80223462:1 gene:Zm00001d050304 gene_biotype:protein_coding transcript_biotype:protein_coding description:zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein
Sequence

TTCCCCACTCCTGTAGTGCCGCCGCCGTGTTCCGGTGATCCGCCATCCGCCTCCGTTCGC
CGTCCCCCGCTTGTCCCGTTAGTGGTTTTCGTCCTTCTGGTTCACTCGCCGGCGGACTAC
ATGCTGATCGACGGGATGAGGTCCGTGGTCGCCACGGTGAGCGGTTACCACGGCGACGAG
CGGCATAGGCTTGTAAACCTCATTGCGGAGACCGGTGCTAGCTACGTAGGATCAATGAGC
AGATCCATCACCCACCTGGTGTGCTGGAGGCTCGAGGGGAAGAAGTACGACATCGCGAGG
AGGCTGGGGACACGCGTTGTGAGCCACTGGTGGTTCACGGAGTGTCTCAGGGAGGGGAGG
CGCCTCCCAGAGGACCCGTACTTTATGGTAAGTGGTGAAGAAGCAGGGCCAGTCCCAGAG
CTGCCTTCTCGTTCCCGTAAACAAGTCAAGAAAAATGCCATCATGGAGGACAGAGTTTTC
CAAGAGTTACCTGATGATTTCTGGGACACTCCTCGAGCTAGAGCCAGCTATAAAGTTAAG
CTTGATGATTCTGATTCTGATTTTGAGTCTGCCCTGCTAGAACAAGATTCTGTGGGTGAT
GGGAATTCTAAGAAAAATCATTCACCAGACGTTAAGAAAAGGAGAAAGCGTATGAAGCAT
GTCAATACATCAACGGACAGAGATGTCTTAAACCTGCAGGATAATGTGTCAAGTGTCATG
GCAAGACAGTGCCTTCATATCTCAAGTCATAGAACGTCCCAGAGCACATCAAAGCATAAG
GGAAACTTGTCACACTTGCTTCACAATGAAGTTCCTATCCGGATGGGAGAAAGGAACAAT
CTTACTGAAAACTCTGAAAATGATAGTTTGTCTGACAGCTTCAGTGAACCTCAGACTTCA
GATACTCTGTGTATAGAAGCTCAAAGAAAATCAAGTGCACCATCATCATCACTTAGACAA
AGTACCCTAGATTCTCTATATGAATTTGGTGAAACTAGTAGGCATGAACCAGCAGGAAGA
AAAAAACTAGACAACGTTGAATTAAGGGAGACTTCAAGAAGCTTACTTCCATTTGATTTG
TCAGGACAGGAACCAGCTTTCTGTACTCAGGAGCAAGTAGATAAATGTAGCCTTGGCACT
CTAGCTGATAAAAAACCCATGGAAAAATCATCTAATATGGAAAGGCAACCAGAATTATCA
TGGATTAGCAATAGCCTCACTTTGCTCTAGTATATTTAGTTTCTTTTTCCATCACCATTA
ATGTTCAACAAGCAATGGCTATTCTTAGAGTTGCATCCTGCGTTTCAGGCTTCTAGGGGT
AAAGTCTCAACATGTCCCCTTTGCAAAGCCAGTTTCACATGTATCAGTAAGGTGGACGAG
GCAGGCACCTCAGATCAGAAGATATACTCGCAGACCATTCCCTGTGAAGCTTCTACTGAT
GTTTTTGTGTCGGGCAATGTAGGCTACGATTTCTCTCGACCAACGTCTGGGCAAGGAGCA
TGCTACCAGTGTCACTTCCGTGAGCCCGAGGAGCTTCTTCTAAGCTGCCACGTCTGCAGA
TCACAGTGGGTACACTCGTACTGCCTTGATCCTCCGCTGACTCCTTGGACATGCATGCAC
TGCAGAGACCTGCGTATGCTGTTTCACCGGTATCGTTAGCCCCAGTTATGGTACTCATGT
CAAACCTTAATTGTTGGAGGAAATTGTATCAGAAGGCATGAACACCATTTGATTACTGAG
ATGTAACTGCCAAGTTCCATTTGATGTCTATACTCTAACATTGATTACTG