Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d050293_T020
CDS Infomation

cds chromosome:B73_RefGen_v4:4:79158786:79161861:1 gene:Zm00001d050293 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:trehalose-6-phosphate synthase9 description: trehalose-6-phosphate synthase9
Sequence

ATGGTTTCAAAATCATATTCAAATCTGCTAGACATGACCCCAGGAGATGGGTTTGACTTT
CGACGACCTTTTAAGTCTCTTCCTCGTGTTGTAACTTCTCCTAGCATTATATCTGACCAT
GATTGGGATTCCATAAGTGATGGTGATTCAGTTGGTTCAGCATTTTCTATCGAGAGGAAA
ATAATTGTCGCCAACTTCCTTCCGCTGAATTGTACAAGAGATGAAACCGGGGAACTGTCC
TTCTCATTGGATCATGATTCACTACTCATGCAACTTAAAGATGGGTTTTCAAATGAGACT
GATGCTGTGTATGTAGGCAGTTTGAAGGTTCATGTAGATCCCAGGGAGCAGGACCAAGTT
GCACAGAAGCTTCTCAGAGAATATCGATGCATACCTACTTTTCTCCCATCTGATCTGCAG
CAGCAGTTCTATCATGGCTTCTGTAAACAACAGTTATGGCCACTTTTTCATTATATGCTT
CCAATTTGCCTTGACAAGGGTGAGTTGTTTGATCGCACCCTGTTTCAAGCCTATGTCCGA
GCCAACAAACTTTTTGCAGATAAAGTTATGGAAGCAATCAATACAGATGATGATTATGTT
TGGGTTCATGATTATCATCTCATGCTGCTCCCTACATTCTTGAGGAAGAGGTTACACCGA
ATAAAGATTGGTTTCTTCCTTCACAGCCCTTTTCCCTCTTCAGAAATATACAGGACTCTG
CCTGTAAGGGATGAAATCCTGAAGTCACTGCTTAATGCTGATCTGATTGGTTTCCAAACA
TTTGACTATGCCCGCCACTTCCTATCTTGCTGTAGCAGATTGCTAGGCCTGCATTATGAG
TCAAAACGTGGTTACATTGGAATAGAGTATTTTGGCCGAACAGTGAGTTTGAAGATCCTT
TCTGTGGGTGTCCATGTTGGTCGGCTTGAATCTGTCTTAAAGTTGCCTGCTACAGTTAGT
AAGGTTGAAGAAATTGAACAAAGGTATAAGGGCAAGATACTCATGTTAGGTGTAGATGAC
ATGGACATCTTCAAAGGAATAAGTCTGAAATTGCTTGCACTGGAGCTTCTTCTGGACAGA
AACCCAAAGCTTAGAGAGAAGGTTGTCCTTGTACAGATCATCAATCCCGCAAGAAGCACG
GGGAAGGATGTGCAGGAAGCTATCACAGAAGCTGTCTCTGTGGCTGAAAGGGTTAACACA
AAGTATGGTTCTTCAAGTTACAAGCCTGTCGTCCTAATTGATAATCGCATACCGTTTTAT
GAAAAGGTTGCATTCTATGCCGCGTCTGACTGTTGTATTGTAAACGCTGTGAGGGATGGC
ATGAACTTAGTACCATATGAGTATACTGTTTGCCGACAGGGAAACGAGGAGATCGACAGA
GTCAGAGGCCTTGACAAAGACACCCATCACACAAGCACACTTATTGTTTCGGAGTTTGTG
GGTTGCTCCCCATCTCTGAGTGGTGCTTTCAGGGTAAATCCTTGGAGCGTCGATGATGTG
GCGGATGCCTTGTGCCGCGCAACTGATCTATCTGAATCTGAGAAACGGTTGCGGCACGAA
AAGCATTATCGCTATGTCAGTACTCATGATGTTGCTTACTGGGCGCACAGCTTTGCTCAA
GATCTGGAAAGAGCATGCAGAGACCATTACAGCCGAAGGTGTTGGGCTATTGGGTTTGGC
CTGAATTTCAGAGTCATTGCTCTTTCTCCTGGCTTCAGAAAGCTTTCTTCGGAGCACTTT
GTTTCTTCTTATAACAGGGCTTCTAGAAGGGCAATATTTCTCGACTACGACGGCACACTT
GTGCCCCAGTCGTCAATCAACAAGGCTCCAAGTGAAGAAGTCATCTCCATTCTTAACACC
TTGTGTAATGATCCAAAGAACGTTGTGTTTATCGTAAGTGGACGAGGACGTGATTCCCTC
GACGAGTGGTTTTCTCCATGCGAGAAGCTCCGTCTAGCCGCAGAACATGGCTATTTTATC
AGGTGGAGCAAGGAAGCTGCATGGGAGTCGAGCTATTCGAGTCCGCGGCAAGAATGGAAG
CACATCGCTGAACCTGTCATGCAGGTATACACCGAGACAACAGACGGATCTTCAGTCGAG
TCGAAGGAGAGCGCTCTAGTGTGGCACTATTTGGATGCAGACCATGATTTCGGTTCCTTC
CAAGCGAAGGAGCTAAAGGATCATCTTGAGAGGGTGCTATCAAATGAGCCCGTTGTTGTG
AAGTGTGGCCATTATATCGTAGAAGTAAAGCCGCAGGGAGTTAGCAAGGGTCGTGCTGTC
GACAAGCTGATTCAAGCACTGGCCAACAACAACGGGAAGGCACAGGATTTCCTGATGTGC
GTCGGCAACGACAGATCTGACGAGGACATGTTCGAATGCATCAACGGTATGGCCTCCAAC
GATGTCTCATCGACCACAGTACCGGAGGTGTTTGCCTGTTCGGTCGGCCAGAAGCCCAGC
AAAGCAAAATACTATGTGGACGACACCAGCGAAGTGATCAGATTGCTCAGGGATGCAACC
CGCTTCTCATCGTCGCAGCGGAGGGAGGACGTCAACGCCAGCCGCGGGCGTGTGACCTTC
AGAGACGCACTCGATTACGTGGACTAG

Peptide Sequence

PEP ID

Zm00001d050293_P020
PEP Infomation

pep chromosome:B73_RefGen_v4:4:79158786:79161861:1 gene:Zm00001d050293 transcript:Zm00001d050293_T020 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:trehalose-6-phosphate synthase9 description: trehalose-6-phosphate synthase9
Sequence

MVSKSYSNLLDMTPGDGFDFRRPFKSLPRVVTSPSIISDHDWDSISDGDSVGSAFSIERK
IIVANFLPLNCTRDETGELSFSLDHDSLLMQLKDGFSNETDAVYVGSLKVHVDPREQDQV
AQKLLREYRCIPTFLPSDLQQQFYHGFCKQQLWPLFHYMLPICLDKGELFDRTLFQAYVR
ANKLFADKVMEAINTDDDYVWVHDYHLMLLPTFLRKRLHRIKIGFFLHSPFPSSEIYRTL
PVRDEILKSLLNADLIGFQTFDYARHFLSCCSRLLGLHYESKRGYIGIEYFGRTVSLKIL
SVGVHVGRLESVLKLPATVSKVEEIEQRYKGKILMLGVDDMDIFKGISLKLLALELLLDR
NPKLREKVVLVQIINPARSTGKDVQEAITEAVSVAERVNTKYGSSSYKPVVLIDNRIPFY
EKVAFYAASDCCIVNAVRDGMNLVPYEYTVCRQGNEEIDRVRGLDKDTHHTSTLIVSEFV
GCSPSLSGAFRVNPWSVDDVADALCRATDLSESEKRLRHEKHYRYVSTHDVAYWAHSFAQ
DLERACRDHYSRRCWAIGFGLNFRVIALSPGFRKLSSEHFVSSYNRASRRAIFLDYDGTL
VPQSSINKAPSEEVISILNTLCNDPKNVVFIVSGRGRDSLDEWFSPCEKLRLAAEHGYFI
RWSKEAAWESSYSSPRQEWKHIAEPVMQVYTETTDGSSVESKESALVWHYLDADHDFGSF
QAKELKDHLERVLSNEPVVVKCGHYIVEVKPQGVSKGRAVDKLIQALANNNGKAQDFLMC
VGNDRSDEDMFECINGMASNDVSSTTVPEVFACSVGQKPSKAKYYVDDTSEVIRLLRDAT
RFSSSQRREDVNASRGRVTFRDALDYVD

Transcript Sequence

Transcript ID

Zm00001d050293_T020
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:79158786:79161861:1 gene:Zm00001d050293 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:trehalose-6-phosphate synthase9 description: trehalose-6-phosphate synthase9
Sequence

ATTTTGTACAGGCCTCAACGAGCTAGCCTGAGACAAGAACACTGGAACCATGGTTTCAAA
ATCATATTCAAATCTGCTAGACATGACCCCAGGAGATGGGTTTGACTTTCGACGACCTTT
TAAGTCTCTTCCTCGTGTTGTAACTTCTCCTAGCATTATATCTGACCATGATTGGGATTC
CATAAGTGATGGTGATTCAGTTGGTTCAGCATTTTCTATCGAGAGGAAAATAATTGTCGC
CAACTTCCTTCCGCTGAATTGTACAAGAGATGAAACCGGGGAACTGTCCTTCTCATTGGA
TCATGATTCACTACTCATGCAACTTAAAGATGGGTTTTCAAATGAGACTGATGCTGTGTA
TGTAGGCAGTTTGAAGGTTCATGTAGATCCCAGGGAGCAGGACCAAGTTGCACAGAAGCT
TCTCAGAGAATATCGATGCATACCTACTTTTCTCCCATCTGATCTGCAGCAGCAGTTCTA
TCATGGCTTCTGTAAACAACAGTTATGGCCACTTTTTCATTATATGCTTCCAATTTGCCT
TGACAAGGGTGAGTTGTTTGATCGCACCCTGTTTCAAGCCTATGTCCGAGCCAACAAACT
TTTTGCAGATAAAGTTATGGAAGCAATCAATACAGATGATGATTATGTTTGGGTTCATGA
TTATCATCTCATGCTGCTCCCTACATTCTTGAGGAAGAGGTTACACCGAATAAAGATTGG
TTTCTTCCTTCACAGCCCTTTTCCCTCTTCAGAAATATACAGGACTCTGCCTGTAAGGGA
TGAAATCCTGAAGTCACTGCTTAATGCTGATCTGATTGGTTTCCAAACATTTGACTATGC
CCGCCACTTCCTATCTTGCTGTAGCAGATTGCTAGGCCTGCATTATGAGTCAAAACGTGG
TTACATTGGAATAGAGTATTTTGGCCGAACAGTGAGTTTGAAGATCCTTTCTGTGGGTGT
CCATGTTGGTCGGCTTGAATCTGTCTTAAAGTTGCCTGCTACAGTTAGTAAGGTTGAAGA
AATTGAACAAAGGTATAAGGGCAAGATACTCATGTTAGGTGTAGATGACATGGACATCTT
CAAAGGAATAAGTCTGAAATTGCTTGCACTGGAGCTTCTTCTGGACAGAAACCCAAAGCT
TAGAGAGAAGGTTGTCCTTGTACAGATCATCAATCCCGCAAGAAGCACGGGGAAGGATGT
GCAGGAAGCTATCACAGAAGCTGTCTCTGTGGCTGAAAGGGTTAACACAAAGTATGGTTC
TTCAAGTTACAAGCCTGTCGTCCTAATTGATAATCGCATACCGTTTTATGAAAAGGTTGC
ATTCTATGCCGCGTCTGACTGTTGTATTGTAAACGCTGTGAGGGATGGCATGAACTTAGT
ACCATATGAGTATACTGTTTGCCGACAGGGAAACGAGGAGATCGACAGAGTCAGAGGCCT
TGACAAAGACACCCATCACACAAGCACACTTATTGTTTCGGAGTTTGTGGGTTGCTCCCC
ATCTCTGAGTGGTGCTTTCAGGGTAAATCCTTGGAGCGTCGATGATGTGGCGGATGCCTT
GTGCCGCGCAACTGATCTATCTGAATCTGAGAAACGGTTGCGGCACGAAAAGCATTATCG
CTATGTCAGTACTCATGATGTTGCTTACTGGGCGCACAGCTTTGCTCAAGATCTGGAAAG
AGCATGCAGAGACCATTACAGCCGAAGGTGTTGGGCTATTGGGTTTGGCCTGAATTTCAG
AGTCATTGCTCTTTCTCCTGGCTTCAGAAAGCTTTCTTCGGAGCACTTTGTTTCTTCTTA
TAACAGGGCTTCTAGAAGGGCAATATTTCTCGACTACGACGGCACACTTGTGCCCCAGTC
GTCAATCAACAAGGCTCCAAGTGAAGAAGTCATCTCCATTCTTAACACCTTGTGTAATGA
TCCAAAGAACGTTGTGTTTATCGTAAGTGGACGAGGACGTGATTCCCTCGACGAGTGGTT
TTCTCCATGCGAGAAGCTCCGTCTAGCCGCAGAACATGGCTATTTTATCAGGTGGAGCAA
GGAAGCTGCATGGGAGTCGAGCTATTCGAGTCCGCGGCAAGAATGGAAGCACATCGCTGA
ACCTGTCATGCAGGTATACACCGAGACAACAGACGGATCTTCAGTCGAGTCGAAGGAGAG
CGCTCTAGTGTGGCACTATTTGGATGCAGACCATGATTTCGGTTCCTTCCAAGCGAAGGA
GCTAAAGGATCATCTTGAGAGGGTGCTATCAAATGAGCCCGTTGTTGTGAAGTGTGGCCA
TTATATCGTAGAAGTAAAGCCGCAGGGAGTTAGCAAGGGTCGTGCTGTCGACAAGCTGAT
TCAAGCACTGGCCAACAACAACGGGAAGGCACAGGATTTCCTGATGTGCGTCGGCAACGA
CAGATCTGACGAGGACATGTTCGAATGCATCAACGGTATGGCCTCCAACGATGTCTCATC
GACCACAGTACCGGAGGTGTTTGCCTGTTCGGTCGGCCAGAAGCCCAGCAAAGCAAAATA
CTATGTGGACGACACCAGCGAAGTGATCAGATTGCTCAGGGATGCAACCCGCTTCTCATC
GTCGCAGCGGAGGGAGGACGTCAACGCCAGCCGCGGGCGTGTGACCTTCAGAGACGCACT
CGATTACGTGGACTAGGCACCAGCAGCAATTCTTAGTTACTCGAAATGATTAGCTGCGGA
GCTTGTAAATTCCGCTGTCTTCTGTCTGCCAATGGTTTTCGTTCTAGAGAATTGTAGTGT
AGCCGACATCGACATGGATCGTCGTCACCGATACACGAACAGCGGAAATATGAGTTGAAG
TTCGCCGTTTCGAGGCTCAGAATTGGTACATTTATAGAATTGTAGTGTAGGCAA