Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d050265_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:4:77234072:77236007:1 gene:Zm00001d050265 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:hypersensitive induced reaction1 description:Hypersensitive-induced response protein 2
Sequence

ATGGGTCAAGCACTCGGCTTGATTCAAGTGGATCAATCGACAGTAGCCATCAAGGAAACT
TTTGGGAAGTTTGACGAGGTCCTAGAGCCTGGATGCCACTTCTTGCCATGGTGCATAGGG
AAGCAAATTGCTGGGTATCTGTCACTGCGTGTGCAGCAGCTTGATGTCCGCTGCGAAACA
AAGACAAAGGATAATGTCTTCGTCAATGTTGTGGCATCTGTGCAATATCGTGCCCTTGCC
GATAAGGCATCTGATGCATTTTACAGGCTTAGTAACACCAGGGAGCAAATCCAGTCATAT
GTTTTTGATGTCATCAGGGCAAGTGTTCCGAAGATGAACTTGGATGATGCCTTTGAGCAG
AAGAATGAAATCGCCAAAGCTGTAGAAAATGAACTTGAAAAGGCAATGTCTATGTATGGA
TACGAGATTGTGCAGACTCTGATTGTTGATATTGAGCCTGATGAGCATGTGAAGAGAGCT
ATGAATGAGATCAATGCAGGCAATATTTCTGAACTGTTGCTGTCGGTTAATGGAACAGCT
GCTAGGCTGAGGTTGGCTGCCAGCGAGAAAGCTGAGGCAGAGAAGATACTGCAGATCAAG
AGAGCCGAAGGTGATGCAGAATCCAAGTACTTGGCGGGTCTGGGTATCGCAAGACAGCGC
CAGGCTATAGTGGATGGGCTCAGAGACAGTGTTCTTGCTTTCTCTGAGAATGTGCCTGGG
ACCTCTGCAAAGGATGTCATGGACATGGTTCTGGTTACCCAGTACTTCGACACCATGAAG
GAGATTGGGGCCTCGTCCAAGTCCTCGTCGGTTTTCATCCCTCATGGACCAGGTGCTGTC
AGAGACATCGCAGCGCAGATAAGGGATGGTCAGCTCCAGGCCAGTCTGCTGTGA

Peptide Sequence

PEP ID

Zm00001d050265_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:4:77234072:77236007:1 gene:Zm00001d050265 transcript:Zm00001d050265_T003 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:hypersensitive induced reaction1 description:Hypersensitive-induced response protein 2
Sequence

MGQALGLIQVDQSTVAIKETFGKFDEVLEPGCHFLPWCIGKQIAGYLSLRVQQLDVRCET
KTKDNVFVNVVASVQYRALADKASDAFYRLSNTREQIQSYVFDVIRASVPKMNLDDAFEQ
KNEIAKAVENELEKAMSMYGYEIVQTLIVDIEPDEHVKRAMNEINAGNISELLLSVNGTA
ARLRLAASEKAEAEKILQIKRAEGDAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPG
TSAKDVMDMVLVTQYFDTMKEIGASSKSSSVFIPHGPGAVRDIAAQIRDGQLQASLL

Transcript Sequence

Transcript ID

Zm00001d050265_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:77234072:77236007:1 gene:Zm00001d050265 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:hypersensitive induced reaction1 description:Hypersensitive-induced response protein 2
Sequence

TTTTTTATTCCTTTGTAGATAAGACATGGGTCAAGCACTCGGCTTGATTCAAGTGGATCA
ATCGACAGTAGCCATCAAGGAAACTTTTGGGAAGTTTGACGAGGTCCTAGAGCCTGGATG
CCACTTCTTGCCATGGTGCATAGGGAAGCAAATTGCTGGGTATCTGTCACTGCGTGTGCA
GCAGCTTGATGTCCGCTGCGAAACAAAGACAAAGGATAATGTCTTCGTCAATGTTGTGGC
ATCTGTGCAATATCGTGCCCTTGCCGATAAGGCATCTGATGCATTTTACAGGCTTAGTAA
CACCAGGGAGCAAATCCAGTCATATGTTTTTGATGTCATCAGGGCAAGTGTTCCGAAGAT
GAACTTGGATGATGCCTTTGAGCAGAAGAATGAAATCGCCAAAGCTGTAGAAAATGAACT
TGAAAAGGCAATGTCTATGTATGGATACGAGATTGTGCAGACTCTGATTGTTGATATTGA
GCCTGATGAGCATGTGAAGAGAGCTATGAATGAGATCAATGCAGGCAATATTTCTGAACT
GTTGCTGTCGGTTAATGGAACAGCTGCTAGGCTGAGGTTGGCTGCCAGCGAGAAAGCTGA
GGCAGAGAAGATACTGCAGATCAAGAGAGCCGAAGGTGATGCAGAATCCAAGTACTTGGC
GGGTCTGGGTATCGCAAGACAGCGCCAGGCTATAGTGGATGGGCTCAGAGACAGTGTTCT
TGCTTTCTCTGAGAATGTGCCTGGGACCTCTGCAAAGGATGTCATGGACATGGTTCTGGT
TACCCAGTACTTCGACACCATGAAGGAGATTGGGGCCTCGTCCAAGTCCTCGTCGGTTTT
CATCCCTCATGGACCAGGTGCTGTCAGAGACATCGCAGCGCAGATAAGGGATGGTCAGCT
CCAGGCCAGTCTGCTGTGA