Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d050219_T017
CDS Infomation

cds chromosome:B73_RefGen_v4:4:74338416:74344820:1 gene:Zm00001d050219 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:phosphatidylinositol 3-kinase1 description:Phosphatidylinositol 3-kinase VPS34
Sequence

ATGTCTGAGAAGAAAGCTCTAACGAAATTTGTCCGCTCAGTGGATTGGAGTGATAACCAA
GAAGCTAAGCAAGCTGTTGAGTTGATTGGAAAGTGGGAAATGATTGATGTGGCTGATGCA
CTAGAGCTTCTCTCACCTGATTTTGAAAGCGACGAAGTTCGTGGTTATGCTGTCAGCGTA
CTTGAAAGGGCTGATGATGAAGAATTACAGTGCTATTTACTCCAGTTAGTGCAAGCTCTT
CGGTTTGAAAGATCTGACAAGTCCCGTCTAGCACTCTTTCTTGTAAACCGTGCTTTGTCC
AACATCGAAATTGCTAGCTTCCTCCGGTGGTATATATTAGTTGAGCTTCACAGTCCTGCA
TATGCAAGACGATATTATGGCACATATGACATGCTTGAAAACAGTATGATGAAATTGGTT
GGTAGGGAGGATGGGGATGAAGATGGATTTCGACTGTGGCAGAGTTTAACCCGGCAGACA
GACCTCACTGCTCAATTGTGTTCTATTATGAAGGATGTAAGAAATGTAAGAGGTAGCGCA
CAAAAGAAAATTGAAAAATTGAGGCAGCTATTATCAGGAGTTTTCAGTGAGCTTACAAAC
TTTGATGAGCCAATTCGTTCACCATTAGCACCAACTCTTCTCCTAACAGGAGTTGTGCCT
CAAGAATCGTCTATATTTAAGAGTGCCTTGAACCCTTTGCGCCTGACATTTAAAACAGCA
AATGGCGGAACATCCAAGATTATTTACAAAAAGGGTGATGACCTCCGGCAAGATCAGTTG
GTTATTCAAACGGTTTCTTTGATGGACCGACTACTCAAATTAGAAAATCTAGATTTGCAC
CTTACTCCATACCGAGTTCTTGCAACTGGACAAGATGAAGGGATGCTTGAATTTATTAGT
TCCAGTTCTCTTGCACAGATTCTATCAGAACATCGCAGTATTACAAGTTACCTACAGAAG
TTCCATCCTGATGAGGATGGTCCTTTTGGTATAACGGCTCAATGTTTGGAGACATTCATA
AAAAGCTGCGCCGGTTACTCTGTCATTACATACATATTGGGGGTTGGAGACAGGCATCTG
GATAATCTTCTTCTAACTGATGATGGACGCCTTTTTCATGTTGACTTTGCTTTTATCCTT
GGGCGAGACCCAAAGCCATTTCCGCCACCGATGAAGTTGTGTAAGGAAATGGTTGAGGCC
ATGGGTGGTGCAGAAAGCCAATATTACACAAGGTTCAAGTCCTACTGCTGCGAAGCATAC
AACATTCTGAGGAAGTCCAGCAGTCTCATTTTGAATCTATTCAAGCTGATGGAGCGATCA
GGCATTCCGGACATCTCTGCCGATGAAAGCGGAGGTCTCAAGCTCCAGGAGAAATTCCGG
TTGGATCTGGACGACGAGGAGGCTATACATTTCTTCCAGGATCTTATCAACGATAGCGTG
AGTGCTCTGTTCCCTCAAATGGTTGAGACCATCCATAGATGGGCTCAATATTGGCGGTAA

Peptide Sequence

PEP ID

Zm00001d050219_P017
PEP Infomation

pep chromosome:B73_RefGen_v4:4:74338416:74344820:1 gene:Zm00001d050219 transcript:Zm00001d050219_T017 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:phosphatidylinositol 3-kinase1 description:Phosphatidylinositol 3-kinase VPS34
Sequence

MSEKKALTKFVRSVDWSDNQEAKQAVELIGKWEMIDVADALELLSPDFESDEVRGYAVSV
LERADDEELQCYLLQLVQALRFERSDKSRLALFLVNRALSNIEIASFLRWYILVELHSPA
YARRYYGTYDMLENSMMKLVGREDGDEDGFRLWQSLTRQTDLTAQLCSIMKDVRNVRGSA
QKKIEKLRQLLSGVFSELTNFDEPIRSPLAPTLLLTGVVPQESSIFKSALNPLRLTFKTA
NGGTSKIIYKKGDDLRQDQLVIQTVSLMDRLLKLENLDLHLTPYRVLATGQDEGMLEFIS
SSSLAQILSEHRSITSYLQKFHPDEDGPFGITAQCLETFIKSCAGYSVITYILGVGDRHL
DNLLLTDDGRLFHVDFAFILGRDPKPFPPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAY
NILRKSSSLILNLFKLMERSGIPDISADESGGLKLQEKFRLDLDDEEAIHFFQDLINDSV
SALFPQMVETIHRWAQYWR

Transcript Sequence

Transcript ID

Zm00001d050219_T017
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:74338416:74344820:1 gene:Zm00001d050219 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:phosphatidylinositol 3-kinase1 description:Phosphatidylinositol 3-kinase VPS34
Sequence

CAGGAATCTGGAGCAAATTTTTATACACCGGCCCCAGTATCATTATCAAATGAACTGGTT
ACTGTATGGGACCCTGAACTTGGAAGAACCAATCCATCTGAGCACAAGCAGTTAAAGCTT
GCTAGGAGCTTGACTCGTGGGATAGTTGATAGAGATCTAAAACCAAGCTCAAATGAGAGA
AAGTTACTACAAACAATTATTAAGTTTCCTCCTACACGCACCTTGGAAGTGGATGAGAAG
CAATTGGTGTGGAAGTTTCGTTTCTCTTTGATGTCTGAGAAGAAAGCTCTAACGAAATTT
GTCCGCTCAGTGGATTGGAGTGATAACCAAGAAGCTAAGCAAGCTGTTGAGTTGATTGGA
AAGTGGGAAATGATTGATGTGGCTGATGCACTAGAGCTTCTCTCACCTGATTTTGAAAGC
GACGAAGTTCGTGGTTATGCTGTCAGCGTACTTGAAAGGGCTGATGATGAAGAATTACAG
TGCTATTTACTCCAGTTAGTGCAAGCTCTTCGGTTTGAAAGATCTGACAAGTCCCGTCTA
GCACTCTTTCTTGTAAACCGTGCTTTGTCCAACATCGAAATTGCTAGCTTCCTCCGGTGG
TATATATTAGTTGAGCTTCACAGTCCTGCATATGCAAGACGATATTATGGCACATATGAC
ATGCTTGAAAACAGTATGATGAAATTGGTTGGTAGGGAGGATGGGGATGAAGATGGATTT
CGACTGTGGCAGAGTTTAACCCGGCAGACAGACCTCACTGCTCAATTGTGTTCTATTATG
AAGGATGTAAGAAATGTAAGAGGTAGCGCACAAAAGAAAATTGAAAAATTGAGGCAGCTA
TTATCAGGAGTTTTCAGTGAGCTTACAAACTTTGATGAGCCAATTCGTTCACCATTAGCA
CCAACTCTTCTCCTAACAGGAGTTGTGCCTCAAGAATCGTCTATATTTAAGAGTGCCTTG
AACCCTTTGCGCCTGACATTTAAAACAGCAAATGGCGGAACATCCAAGATTATTTACAAA
AAGGGTGATGACCTCCGGCAAGATCAGTTGGTTATTCAAACGGTTTCTTTGATGGACCGA
CTACTCAAATTAGAAAATCTAGATTTGCACCTTACTCCATACCGAGTTCTTGCAACTGGA
CAAGATGAAGGGATGCTTGAATTTATTAGTTCCAGTTCTCTTGCACAGATTCTATCAGAA
CATCGCAGTATTACAAGTTACCTACAGAAGTTCCATCCTGATGAGGATGGTCCTTTTGGT
ATAACGGCTCAATGTTTGGAGACATTCATAAAAAGCTGCGCCGGTTACTCTGTCATTACA
TACATATTGGGGGTTGGAGACAGGCATCTGGATAATCTTCTTCTAACTGATGATGGACGC
CTTTTTCATGTTGACTTTGCTTTTATCCTTGGGCGAGACCCAAAGCCATTTCCGCCACCG
ATGAAGTTGTGTAAGGAAATGGTTGAGGCCATGGGTGGTGCAGAAAGCCAATATTACACA
AGGTTCAAGTCCTACTGCTGCGAAGCATACAACATTCTGAGGAAGTCCAGCAGTCTCATT
TTGAATCTATTCAAGCTGATGGAGCGATCAGGCATTCCGGACATCTCTGCCGATGAAAGC
GGAGGTCTCAAGCTCCAGGAGAAATTCCGGTTGGATCTGGACGACGAGGAGGCTATACAT
TTCTTCCAGGATCTTATCAACGATAGCGTGAGTGCTCTGTTCCCTCAAATGGTTGAGACC
ATCCATAGATGGGCTCAATATTGGCGGTAACACAAGCTAATGTCGTAGAAGCAAGTGTGA
ATCTGTACATGCTGACTGTCACAAGCCACGGTAATAAGCGAGAAACGACACTGATGGATG
GAAGCCTAGGCGCCTAGCATTTGGGGTTCAAGCTGCGCCGCATCTGCGAATTGATTGGGC
TGATGCAGGGCATGGGCAATCTTCTCGTGCCGGTGACACCCAGGAATTCGGGTTGTCAGT
TGTCACTTGTGATAGTAGAATTCCGTCACGCACTGCTGTAGACCTATGGGCATTCGTCAG
ATGTATATATGCGTTAATGTATAAAATCAACTTCAGTAGCAAATTTGTGAATACCGGAAT
ACGTGATGGTTTAGGGCCTGTTTGTTTACCCCATGGATTATATAATCTGGATTATTTTTG
GAGGATTATATAATCTGGATTATATAATCTGAGTAGTTCTGTTTGTTTACCCAGATTATT
TGAGTTGTTAATAGGATTCTTTTGTATGAGGAAGACAAGAATGCCCTCTATATTTGTACT
AGGTTGAAACTCATATATGAGATGAACAATGTAACAAACGTTTCTG