Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d050104_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:4:65810719:65819113:-1 gene:Zm00001d050104 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGCCCCGCCCCAGTTCACGCGCCAAGGCGGCATCACCGCCGGAGGCGGTGGCCGGTGCC
TCGCAGCGCACCCCTGCGCCGTCCCCGTCCACCTCCCTCCGCCTCGGCATTGGCCCCGTA
GCCTCCGATGACAACCGCGGCGCCGGATCCCTCGACCTCAAGCAACCCGCCGCTGGGCCT
CGCCGACACAGCCTGCGCCTCATGGGCGCCGCCCTCGGCCTCGGCCTAGGCCCGGTCTCC
CACCACGATGACTGCGGCGCCGGATGCCCCAACCTCAGTCCTCCCGCCGCCGTGCCTCCC
CGACGCAGCCTGCGCCTCGCGGGCCCCGCCTTGGGTACTCCAAACACTCTCTCCGCTCGT
GACGGCAGTTCCTCCGGGTTCGGGTCGGGCGGGAGCGAGAAGAGGTCGGGGAGGGCCCGT
GCTCGAGTCCCTGCCTCTTCGCTTGCTACATCCATCTCGCCGAGGACTGGGAACTCCAAT
AGCGATGGCGGAGGGTCGGGGGCGGACAGGGTTTCCGCGAGCGGCGACAGCTCTGGCGGT
TCGGATCCCTTCACGACCCTGCGGTCAGGGTTTCGGATCGCGAAGCGTCGGATGGAGGCG
GGTGGGGAGGCGGAGACTGGGTCGTCTCGTCGAGGACAGGTGCATAACGAAATGCTGCAC
CAACACGTGGACACGCCGACGAAGCGGTGTAAGACCATATTGGTCGGTGGAGTGGAGACA
GAGCATGTCTCTGACACAAAGGGTGATTCTGATGAGGATTGTATGATGCTGGGTCCAAGT
GGGACCGAACTGAATTATGTTGCTACGAAGACTGAAAAGGGGGATGTGGATGATCCTGCC
AATGCAAGCAATGGAGAATCTCTGCAGACGCATAATCTGTTACCGGCAGCAAATGGTGGG
GTGGTTGAGCAATTAGTATATGCTTCAGGAAGTCCTGCAAGTTTTGAAGCACAAGTCTCT
GCAGATATGTGTCTCAAGGAAGGTTCGAGCCAATGCAGTTCTAGGAAGGAAGGCAAAGTG
AAAGAGAAGCTTGTTTTGGGGAATAACAAATCTTGCGCTTATGCTAATGTGGGCTCTGCA
GTCGATACCTGTTCCCACAAATTCAACCCTGATAGCAAAGGAAAGGAAAAGATGGTTGCA
GAAGATAGTTTATCATCTCTGACCTCGAGCGAGGATGAGCCAGATTTCGATCCAGTGGAT
TCCAAAGAGACTCAGCTCAACTCAGGATCAGTTTCTGCTTCTATGGAGTCATATCGCAGA
CAAACCGTAAAAGAAAGGGCTATCAAGCTGGCCCCTAAATTTGCATTCTTCAAAGCAGAT
AAAGATGAGCATAGTGAAGATGACGATGAAGAGTTAGAGCCTGGTCCTGACACTGAAGAC
TGGCCAGGCCCATTTGCAACTGCGGCAAGGATATATGAAGAAAGAGAAGCTAAGTTGAGA
GCTCGAGAGTTGAATTCTTTAAAGCTGGACGAATCTGCAAACAGGGTCATCCGTTGGTCG
CCTTCAAAGGATAGGAAAAATCTAGTACAAGCTCAAGTTGCTCCATCACTTACAAGTGTA
TGCTTAAATACCCTTGCGGAACATTCTGAATGGATTCAATCGCTTGAAGGTGTCCCAGAG
GAGCTAAAGCACAAGCTGTTAAAGATTCTGTGTGATTCCAGGAAGATGAATACTCATCTT
CTCAATAAACTATTGTGTGACAGTCCTACAGAACTGCATCTCAGCGAGTGTTCATGGCTG
AGTGAGGATGACTTTGAGAAAACTTTTGGGAAATGCAGCACTGAAAGTTTGCAGGATCTA
CAGCTTGATATATCTGGGAGATGCATACCTGACTACATATTGCCAACTACCTTAGCTAAG
GTTCCTAACTGCATGCCATTGTTGAGAAAAATATCTCTGAAGGGAAATTATCGACTTTCT
GATAATGGTTTAGTCACAATCATCTCTGCCGCGCCTTCTTTATGCTCCCTAAATCTGTGC
GAGTGTTCTCTTCTCACTTCATCTGGAATCGATATTCTTGCAAACAAGTTATGTTCAGTT
CTTAGAGAACTCTATATAGATGACTGCACAAATGTGGACGCTATGACGATTCTTCCTTCT
CTACAGAAGATTAAGCATCTAGAGGTTTTGTCAATGTCTAGAATACAATCTGTTTGTGAC
AAATTTGTGAAGGGGCTCATTCCTGTACATGGTTTAAATCTGAAGGAGTTAGCATTTGCT
GGTTGCTTGAAACTTACCTCATCTTCCATCAAGACTATTGGGGAATACTGTCAAAAAATA
ACTTCATTGGACCTTTGCAACTTGAATCGGCTGCGTGACTCAGCAATGATGCATCTTCGT
GGTTGTAGGCTAATAAGGAAACTAAAGCTTCAAAGAAATGCATTCAGTGATGAAGCTGTG
TCTCAATATTTGGAAGCATCTGGAGGATGCCTGACTGAGCTAATGCTAAACAATGTTGAG
GTTGGAGACCTTACTGCGCTTGCAATTTCTCGCAAGTGTTATGTTTCATTGGAGGCTCTG
GATCTTTCCTTCTGCCGTGAACTGACAGACGAAGCTTTGGGGCTGATTGTCGACAGCTGT
CCATCATTGAGGATTCTTAAGCTATTTGGTTGTACCCAGGTCACGGATTTGTTCCTCAAG
GGTCACTCGAACACATCGGTCAAAATCGTCGGAATAGGAGGGAGCATACTAGTGCAAATG
GATAGCCGTTAG

Peptide Sequence

PEP ID

Zm00001d050104_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:4:65810719:65819113:-1 gene:Zm00001d050104 transcript:Zm00001d050104_T002 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MPRPSSRAKAASPPEAVAGASQRTPAPSPSTSLRLGIGPVASDDNRGAGSLDLKQPAAGP
RRHSLRLMGAALGLGLGPVSHHDDCGAGCPNLSPPAAVPPRRSLRLAGPALGTPNTLSAR
DGSSSGFGSGGSEKRSGRARARVPASSLATSISPRTGNSNSDGGGSGADRVSASGDSSGG
SDPFTTLRSGFRIAKRRMEAGGEAETGSSRRGQVHNEMLHQHVDTPTKRCKTILVGGVET
EHVSDTKGDSDEDCMMLGPSGTELNYVATKTEKGDVDDPANASNGESLQTHNLLPAANGG
VVEQLVYASGSPASFEAQVSADMCLKEGSSQCSSRKEGKVKEKLVLGNNKSCAYANVGSA
VDTCSHKFNPDSKGKEKMVAEDSLSSLTSSEDEPDFDPVDSKETQLNSGSVSASMESYRR
QTVKERAIKLAPKFAFFKADKDEHSEDDDEELEPGPDTEDWPGPFATAARIYEEREAKLR
ARELNSLKLDESANRVIRWSPSKDRKNLVQAQVAPSLTSVCLNTLAEHSEWIQSLEGVPE
ELKHKLLKILCDSRKMNTHLLNKLLCDSPTELHLSECSWLSEDDFEKTFGKCSTESLQDL
QLDISGRCIPDYILPTTLAKVPNCMPLLRKISLKGNYRLSDNGLVTIISAAPSLCSLNLC
ECSLLTSSGIDILANKLCSVLRELYIDDCTNVDAMTILPSLQKIKHLEVLSMSRIQSVCD
KFVKGLIPVHGLNLKELAFAGCLKLTSSSIKTIGEYCQKITSLDLCNLNRLRDSAMMHLR
GCRLIRKLKLQRNAFSDEAVSQYLEASGGCLTELMLNNVEVGDLTALAISRKCYVSLEAL
DLSFCRELTDEALGLIVDSCPSLRILKLFGCTQVTDLFLKGHSNTSVKIVGIGGSILVQM
DSR

Transcript Sequence

Transcript ID

Zm00001d050104_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:65810719:65819113:-1 gene:Zm00001d050104 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ACCCAAAGCCAAAACCCCTCGCGTCGTCGGCCGTCGCGGACGCTTCCCTCCATCGTGCGT
CTGCGCCGTCACGTTTTCCGCGATGCCCCGCCCCAGTTCACGCGCCAAGGCGGCATCACC
GCCGGAGGCGGTGGCCGGTGCCTCGCAGCGCACCCCTGCGCCGTCCCCGTCCACCTCCCT
CCGCCTCGGCATTGGCCCCGTAGCCTCCGATGACAACCGCGGCGCCGGATCCCTCGACCT
CAAGCAACCCGCCGCTGGGCCTCGCCGACACAGCCTGCGCCTCATGGGCGCCGCCCTCGG
CCTCGGCCTAGGCCCGGTCTCCCACCACGATGACTGCGGCGCCGGATGCCCCAACCTCAG
TCCTCCCGCCGCCGTGCCTCCCCGACGCAGCCTGCGCCTCGCGGGCCCCGCCTTGGGTAC
TCCAAACACTCTCTCCGCTCGTGACGGCAGTTCCTCCGGGTTCGGGTCGGGCGGGAGCGA
GAAGAGGTCGGGGAGGGCCCGTGCTCGAGTCCCTGCCTCTTCGCTTGCTACATCCATCTC
GCCGAGGACTGGGAACTCCAATAGCGATGGCGGAGGGTCGGGGGCGGACAGGGTTTCCGC
GAGCGGCGACAGCTCTGGCGGTTCGGATCCCTTCACGACCCTGCGGTCAGGGTTTCGGAT
CGCGAAGCGTCGGATGGAGGCGGGTGGGGAGGCGGAGACTGGGTCGTCTCGTCGAGGACA
GGTGCATAACGAAATGCTGCACCAACACGTGGACACGCCGACGAAGCGGTGTAAGACCAT
ATTGGTCGGTGGAGTGGAGACAGAGCATGTCTCTGACACAAAGGGTGATTCTGATGAGGA
TTGTATGATGCTGGGTCCAAGTGGGACCGAACTGAATTATGTTGCTACGAAGACTGAAAA
GGGGGATGTGGATGATCCTGCCAATGCAAGCAATGGAGAATCTCTGCAGACGCATAATCT
GTTACCGGCAGCAAATGGTGGGGTGGTTGAGCAATTAGTATATGCTTCAGGAAGTCCTGC
AAGTTTTGAAGCACAAGTCTCTGCAGATATGTGTCTCAAGGAAGGTTCGAGCCAATGCAG
TTCTAGGAAGGAAGGCAAAGTGAAAGAGAAGCTTGTTTTGGGGAATAACAAATCTTGCGC
TTATGCTAATGTGGGCTCTGCAGTCGATACCTGTTCCCACAAATTCAACCCTGATAGCAA
AGGAAAGGAAAAGATGGTTGCAGAAGATAGTTTATCATCTCTGACCTCGAGCGAGGATGA
GCCAGATTTCGATCCAGTGGATTCCAAAGAGACTCAGCTCAACTCAGGATCAGTTTCTGC
TTCTATGGAGTCATATCGCAGACAAACCGTAAAAGAAAGGGCTATCAAGCTGGCCCCTAA
ATTTGCATTCTTCAAAGCAGATAAAGATGAGCATAGTGAAGATGACGATGAAGAGTTAGA
GCCTGGTCCTGACACTGAAGACTGGCCAGGCCCATTTGCAACTGCGGCAAGGATATATGA
AGAAAGAGAAGCTAAGTTGAGAGCTCGAGAGTTGAATTCTTTAAAGCTGGACGAATCTGC
AAACAGGGTCATCCGTTGGTCGCCTTCAAAGGATAGGAAAAATCTAGTACAAGCTCAAGT
TGCTCCATCACTTACAAGTGTATGCTTAAATACCCTTGCGGAACATTCTGAATGGATTCA
ATCGCTTGAAGGTGTCCCAGAGGAGCTAAAGCACAAGCTGTTAAAGATTCTGTGTGATTC
CAGGAAGATGAATACTCATCTTCTCAATAAACTATTGTGTGACAGTCCTACAGAACTGCA
TCTCAGCGAGTGTTCATGGCTGAGTGAGGATGACTTTGAGAAAACTTTTGGGAAATGCAG
CACTGAAAGTTTGCAGGATCTACAGCTTGATATATCTGGGAGATGCATACCTGACTACAT
ATTGCCAACTACCTTAGCTAAGGTTCCTAACTGCATGCCATTGTTGAGAAAAATATCTCT
GAAGGGAAATTATCGACTTTCTGATAATGGTTTAGTCACAATCATCTCTGCCGCGCCTTC
TTTATGCTCCCTAAATCTGTGCGAGTGTTCTCTTCTCACTTCATCTGGAATCGATATTCT
TGCAAACAAGTTATGTTCAGTTCTTAGAGAACTCTATATAGATGACTGCACAAATGTGGA
CGCTATGACGATTCTTCCTTCTCTACAGAAGATTAAGCATCTAGAGGTTTTGTCAATGTC
TAGAATACAATCTGTTTGTGACAAATTTGTGAAGGGGCTCATTCCTGTACATGGTTTAAA
TCTGAAGGAGTTAGCATTTGCTGGTTGCTTGAAACTTACCTCATCTTCCATCAAGACTAT
TGGGGAATACTGTCAAAAAATAACTTCATTGGACCTTTGCAACTTGAATCGGCTGCGTGA
CTCAGCAATGATGCATCTTCGTGGTTGTAGGCTAATAAGGAAACTAAAGCTTCAAAGAAA
TGCATTCAGTGATGAAGCTGTGTCTCAATATTTGGAAGCATCTGGAGGATGCCTGACTGA
GCTAATGCTAAACAATGTTGAGGTTGGAGACCTTACTGCGCTTGCAATTTCTCGCAAGTG
TTATGTTTCATTGGAGGCTCTGGATCTTTCCTTCTGCCGTGAACTGACAGACGAAGCTTT
GGGGCTGATTGTCGACAGCTGTCCATCATTGAGGATTCTTAAGCTATTTGGTTGTACCCA
GGTCACGGATTTGTTCCTCAAGGGTCACTCGAACACATCGGTCAAAATCGTCGGAATAGG
AGGGAGCATACTAGTGCAAATGGATAGCCGTTAGTTTGATTGGAGAACGACACTACATTC
TCCTGTTCATTCAGTTATCTAGCTTAGGATTCGAGGCACTAAAGGTCCTCAATGTGGCTG
CAGCACTAAGATGCCATATTCCCGGGACAACGGAATCGAAGGGAAAAGAAAATGGAACAT
GGCTGCAGCACTAAGCAGAACATCAAACGCGGAATATTTTGTGAACCTACCTTGCTTATA
CCAGTTAGCAGTGTAGAGATCTTTCTTGAAATGCTTTTGTTTTTCTTGGTTAACGTTTTT
TCTTGAAAGGTTTCTCGGTTAACTTGAAGCAGCGTAAAGTCTGATGCTGCATAATGCAAA
CTATT