Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d050017_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:4:59930211:59934321:1 gene:Zm00001d050017 gene_biotype:protein_coding transcript_biotype:protein_coding description:Remorin family protein
Sequence

ATGCCTTTAACCAGGTTCGTGCGCCGGGGTGGTCGACTGGGGACGATGGATCCGGAGCGG
GACGAGATGCTGACTTCCTCGTCCTCCTACGCTTCTGCAGGTTCCACGGAGCCACAAGAG
GAGGAGGAGGAGGGCGCCGGGGCATTAGAAGCGGCCAAGGACAACAAGCGGGTACATGGT
GCACGACCCCAGGGGCAGACCAAGAATGCAGCCCCCTGTTTCACTCGAGAACGCCAGGAC
CAGCGGCATCATCGGTTGGGAGCTGTTCTTTTCCAAGGCAGGAAGGGCAGGGCGCAGCGG
CCGGCCTCGCTTGATTTCGGCTGCCCTGGTGTTGCCAGATCCTCGACGCATTCTCCGGGG
TTCCCGGCCGCCGGTGTCGCGGTGGTGAACAAGGGGATGGGCGTATCGTATCCGTCACAC
AGTAGGCCGGACGTGCTGTCTAGTCCGGGGACGCCGAGCTGCAATCGGCGTGGGATGGCA
GGCGTTGGCTACCAGCAGGGTCCTCGTTCAGAAAGAGTGATCCCGCCTTGGACCGGCCAT
ACAAGCCATTCTGGGAGCGGCATGGTGTTACCTTACAGCACTGGGACTGGGAGGACGCTG
CCATCGAAATGGGAGGATGCAGAGAGGTGGATCTTCAGCCCCAACCCCAACCCCAACAAT
GCACTCGGGAGGTCGGTCCCGCAACTCTGGCGGCCAAAATCCAAAAGTGGGCCTCTTGGA
CCTCCCGGTAGATTTTGTGGGGCGTACTCTTGTGTTTCGTCGTCGGCTCAGTTTCTTGAC
AACGGTAGAGTTGGAAATCTCACTGTGAATGCACATTACATGGCTGGGATGTTGCTACCT
GAGCATATTTGCGGGGGTGTTATGGACTGGGAAAGGGATGCAAGTGGAGCATCGGGTGAG
GATAGTAGCAATGGCCAGGGAGGCTGCAGGCCTGGTCAAATGAATGTTCGGCATCCTGCT
ATGCAGCCCACCAGGGTTTCTCAGCAACATGGTAGTGCAATGGAGTCATATCAGTCATTG
CATGCTTCTCTTCAATCTATACAAGATGGTGGAATTGAAAGCATAAAAGACTCTGCCACT
AGCAGTGCCCCCATTATTCTGAGGAAGGATGTGGCAACACAAACAAGCCCTGCTATTAGC
AGGTCATCCTCTCCCAGCACGAGGACTTCGTTCTCCCGTTCACTATCGTCACAACAAGTC
AAAGAGCTGGAGAGTTGTTTCTCTAAGCTCGAGGTCAGGGATGTGCAGGTGGATGATCGG
GTGACTCTGACTAGGTGGTCCAAGAAACATGTCACCCGAGGCTCTGAAAAGAATGCTACA
AATATTATTGAGTGCAAGAAAAAAACCGTGGATTCTAAATCTTCTGCCTGGGAAGTAACA
CAAACTGCAAAGTGTATTTCAATGATTGAGGGAGAGGAAGCAAAAATGACTGCATGGGAG
AATATGCAGAAAGCTGAAGCAGAAGCAGCCATACAAAAGCTTGTGATAAAACTTGAAAAG
AAAAGGCCATACTCGCTGGAGAGGATTTTCAACACCCTCAGGTCTGGCTCTCGGAAGACA
CAGGTGGTACGCAGTACATCAACCGCAAATCAGGATCAGCATATTTCCAGAACTATCAAA
ACGGCGCCAAACCTCAGCAAGAACGGTCAAATGAGTTCATTGAGTGGATGCTTTACATGT
CATGCTTTCTAG

Peptide Sequence

PEP ID

Zm00001d050017_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:4:59930211:59934321:1 gene:Zm00001d050017 transcript:Zm00001d050017_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Remorin family protein
Sequence

MPLTRFVRRGGRLGTMDPERDEMLTSSSSYASAGSTEPQEEEEEGAGALEAAKDNKRVHG
ARPQGQTKNAAPCFTRERQDQRHHRLGAVLFQGRKGRAQRPASLDFGCPGVARSSTHSPG
FPAAGVAVVNKGMGVSYPSHSRPDVLSSPGTPSCNRRGMAGVGYQQGPRSERVIPPWTGH
TSHSGSGMVLPYSTGTGRTLPSKWEDAERWIFSPNPNPNNALGRSVPQLWRPKSKSGPLG
PPGRFCGAYSCVSSSAQFLDNGRVGNLTVNAHYMAGMLLPEHICGGVMDWERDASGASGE
DSSNGQGGCRPGQMNVRHPAMQPTRVSQQHGSAMESYQSLHASLQSIQDGGIESIKDSAT
SSAPIILRKDVATQTSPAISRSSSPSTRTSFSRSLSSQQVKELESCFSKLEVRDVQVDDR
VTLTRWSKKHVTRGSEKNATNIIECKKKTVDSKSSAWEVTQTAKCISMIEGEEAKMTAWE
NMQKAEAEAAIQKLVIKLEKKRPYSLERIFNTLRSGSRKTQVVRSTSTANQDQHISRTIK
TAPNLSKNGQMSSLSGCFTCHAF

Transcript Sequence

Transcript ID

Zm00001d050017_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:59930211:59934321:1 gene:Zm00001d050017 gene_biotype:protein_coding transcript_biotype:protein_coding description:Remorin family protein
Sequence

ATTACGATAAACAATATGGGGCCCTAAACCCTGGCAAACGGGGACGGCGAAAATGCCTTT
AACCAGGTTCGTGCGCCGGGGTGGTCGACTGGGGACGATGGATCCGGAGCGGGACGAGAT
GCTGACTTCCTCGTCCTCCTACGCTTCTGCAGGTTCCACGGAGCCACAAGAGGAGGAGGA
GGAGGGCGCCGGGGCATTAGAAGCGGCCAAGGACAACAAGCGGGTACATGGTGCACGACC
CCAGGGGCAGACCAAGAATGCAGCCCCCTGTTTCACTCGAGAACGCCAGGACCAGCGGCA
TCATCGGTTGGGAGCTGTTCTTTTCCAAGGCAGGAAGGGCAGGGCGCAGCGGCCGGCCTC
GCTTGATTTCGGCTGCCCTGGTGTTGCCAGATCCTCGACGCATTCTCCGGGGTTCCCGGC
CGCCGGTGTCGCGGTGGTGAACAAGGGGATGGGCGTATCGTATCCGTCACACAGTAGGCC
GGACGTGCTGTCTAGTCCGGGGACGCCGAGCTGCAATCGGCGTGGGATGGCAGGCGTTGG
CTACCAGCAGGGTCCTCGTTCAGAAAGAGTGATCCCGCCTTGGACCGGCCATACAAGCCA
TTCTGGGAGCGGCATGGTGTTACCTTACAGCACTGGGACTGGGAGGACGCTGCCATCGAA
ATGGGAGGATGCAGAGAGGTGGATCTTCAGCCCCAACCCCAACCCCAACAATGCACTCGG
GAGGTCGGTCCCGCAACTCTGGCGGCCAAAATCCAAAAGTGGGCCTCTTGGACCTCCCGG
TAGATTTTGTGGGGCGTACTCTTGTGTTTCGTCGTCGGCTCAGTTTCTTGACAACGGTAG
AGTTGGAAATCTCACTGTGAATGCACATTACATGGCTGGGATGTTGCTACCTGAGCATAT
TTGCGGGGGTGTTATGGACTGGGAAAGGGATGCAAGTGGAGCATCGGGTGAGGATAGTAG
CAATGGCCAGGGAGGCTGCAGGCCTGGTCAAATGAATGTTCGGCATCCTGCTATGCAGCC
CACCAGGGTTTCTCAGCAACATGGTAGTGCAATGGAGTCATATCAGTCATTGCATGCTTC
TCTTCAATCTATACAAGATGGTGGAATTGAAAGCATAAAAGACTCTGCCACTAGCAGTGC
CCCCATTATTCTGAGGAAGGATGTGGCAACACAAACAAGCCCTGCTATTAGCAGGTCATC
CTCTCCCAGCACGAGGACTTCGTTCTCCCGTTCACTATCGTCACAACAAGTCAAAGAGCT
GGAGAGTTGTTTCTCTAAGCTCGAGGTCAGGGATGTGCAGGTGGATGATCGGGTGACTCT
GACTAGGTGGTCCAAGAAACATGTCACCCGAGGCTCTGAAAAGAATGCTACAAATATTAT
TGAGTGCAAGAAAAAAACCGTGGATTCTAAATCTTCTGCCTGGGAAGTAACACAAACTGC
AAAGTGTATTTCAATGATTGAGGGAGAGGAAGCAAAAATGACTGCATGGGAGAATATGCA
GAAAGCTGAAGCAGAAGCAGCCATACAAAAGCTTGTGATAAAACTTGAAAAGAAAAGGCC
ATACTCGCTGGAGAGGATTTTCAACACCCTCAGGTCTGGCTCTCGGAAGACACAGGTGGT
ACGCAGTACATCAACCGCAAATCAGGATCAGCATATTTCCAGAACTATCAAAACGGCGCC
AAACCTCAGCAAGAACGGTCAAATGAGTTCATTGAGTGGATGCTTTACATGTCATGCTTT
CTAGAGATGTAGCTCCATGGAAAACACAGGTGGTCCATGCACACTTAACAGTAGTTTCCT
TGTTTTCAGGCACTATTGTTAGTTTAAAGTGTAGAGGAAAAAAATAGATCCTTGTCAGTA
ACCAACTAGGGACTGAATCCCCCCTCCCCCTTTTCCAATGGTCAATCTATAGCATCGATC
ATAATCTGGATTGTCCTTAAGTTTTTATTGTGCTAGGGGAACATAAGAAAGTATGTAGAG
CAAAATGAGAGGAGCTGTTGTTACCCTCAATTCTTTGTGATTATTGGTATTCCACCATAT
AATAATAAAAGAGGTTCCTCTTC