Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d049974_T041
CDS Infomation

cds chromosome:B73_RefGen_v4:4:56336280:56343702:1 gene:Zm00001d049974 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peroxisome biogenesis protein 1
Sequence

ATGCTTCCGTACTCTATTCGTCACTTCATAAGTGCTGATGTACATTCATGGGTATATATT
AAGACATATTCAGCCAACATCAAGGAGGATGAACCTCTAGTGACAATATCTCCTTTAAAG
TTCAAGATGCATGTGAAAGATGCTCATGATAGCAGTAAATTAGTCAGTCAGGAAGTGGAC
ACTTCGAGGATAACCAGAATTCCTTCAGAAAATGGTGATTTCTTCCAGAAAGCTCGTTAC
AGTGAAAACAAAAATATTCGAGGTGCAGATATTGAGAGCATTTCTGAATCAGTGTCAAGG
CAGAAATTTTTTATTAAGCATTGGCTTATTGGGCACCTTAAAGAAATGGGCTTGCATGCT
AGCCATACTGAGATGAATTCAATAGTCTTGCCAACCAATATTTTGCTCCATTTGGAAGCG
ACAGATAAAGAAGGAACCAAAGGAGTTGAATTCTTATACTTTCTAAAGCTTACATCTGAA
AATTCTAATTTCAACGATTCACAACTTAATATTGAGACTACTTGGAGTGTTCCAACCAGC
AATGCTGATGATCTTGAACTGCATTTTGGGAAGTTCGAGCTTGGCGAGCCTGTATCTTTT
GATTCCCTAGTGGACAGTGGTTCCAGTGATGGTTTCAAGCTGACTCGGTCTTCTTTAGGC
TGGATGGAGAATGCAATGTCAGATGTGACAAAAAGGTTATCTGTGCTCTTATCAGCAACT
AGCCTAAGGTTATTTAACAGAATAAAGTTCCCCTTTCCTGGACATGTTATTGTATATGGA
CCTCGAGGTTCTGGCAAAACTGCTTTGACCAGGGCTTCTGCAAAATACTTTGAGGACCAT
AAAGATATCTTGGCGCACATAATATACATTGATTGTTCCAAACTTGCACTTGGCAAGGCT
AAGGAGACAAGGCAAGAAATTGAAGACAGCATGTCTGAAGCACTGCTTCATTCACCTTCG
ATCATCATATTTGATGATCTGGACAGTGTAGTTTCAGTCTCCTCAGATCCTCAAGTGTCT
CAATCATCCAGTTCTTCTGATTCACTTGTTCAATATTTGGCTGACATTATGGATGAGTAC
AAGGATAAGATTCAAAATACATGCGGGTATGGACCTATCGCGTTTATGGCTTCAGTTCAG
TCACTTCAGAGTCTTCCTCAAGACTTAACCTCTTCTGGTTACTTCTTTTTTTCTATTTTT
CTTCAAAGTGTGCTGGTTGAGTCACTGACTTCAAGTATGCTAATAAAAACACGTTTTCAC
CTTGCAGGAAGATTTGATTTCCATATTGAGCTTTCTGCTCTTGCAGTACCTGAGCGCAAA
GCACTATTGCAACATCAAGTTGAGGAGCATGATTTATTGTGTTCTGAGGAAGTTCTGTCA
GAGATAGCATCAAAATGTGAAGGTTATGATGCATATGACTTGGAAATTTTGGTTGATAGG
GCTGTGCACACTGCTGCTTATCGCTTTCTTCTGCCTTCTAATGCTTGTCACAACTCTCTG
AAACGAACTTTGTTGATGGAAGATTTCTTTAAAGCAATGCATGGCTTCCTTCCAGTCGCC
ATGCGTGATCTTAGGAAATATGCTCCTGATGATAAAGATGGTGGTTGGGAGGATGTTGGA
GGGCTAGATGAAGCAGTAACTATCATTAAAGAGACTCTTGAATTGCCGTCAAAATACCCA
AATATCTTTACCAGGGCACCTGTGCGGTTGCGGTCAAACATTCTCCTGTATGGACCACCT
GGATGTGGTAAAACTCACATTGTGAGAGCTGCGGCTGCTGCTTGTTCTTTGCGATTCATT
TCAGTCAAGGGTCCAGAGCTATTGAATAAGTATATTGGTTCATCTGAGCAATCTGTTCGC
GACTTTTTTGCAAAGGCCGTTGCTGCAGCACCTTGCCTATTATTCTTTGATGAATTTGAC
TCCATTGCACCCCAGCGAGGAACTCATAGTGCAGGAGTTTCTGATCGTGTAGTTAATCAG
TTCTTGACGGAACTGGATGGTGTGGAAACCTTAACTGGAGTATTCGTATTTGCAGCTACG
AGCAAGCCACAGCTAATCGATGCTGCGCTCTTGCGACCTGGAAGGTTTGATCGTCTAGTC
TTTTGTGATTTCCCTCGATGGGATGAACGTTTAGAAATTCTGAAGGTGCATTCTAGGACG
GTTTCACTGGCAAGTGATGCCAGTCTCGAAGATGTTGCTTCTCTGACCGAAGGATTTACT
GGTGCTGATCTCGCTGCTATTCTAACGGATGCTGGACTAGCTGCAATTCATGAACTTTTG
GACAACCAGGAGAACGGTGTTCCAGAAACCGAACCGTGCATCAGCAAAGAACTTCTCATG
TCCGTCACTAGGAAGGCAAGACCTTCCACACCAGCAGACGAGAAGATGCGGTATGATAGG
GAGTTTGGTGAATTCGTGTCATCCAGGAAGTCTATTTCGACAAAGGTGACCTCATTCTTA
TTTTTAAATCCTCAAAAGTCAAACCATGATATTTCCAATGAAATTCATTGGATAATTACT
GGAAGAATCTGGTGCAGGCAAGAGAGTCAAAAGGCAAAAAGGTTACACTAG

Peptide Sequence

PEP ID

Zm00001d049974_P041
PEP Infomation

pep chromosome:B73_RefGen_v4:4:56336280:56343702:1 gene:Zm00001d049974 transcript:Zm00001d049974_T041 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peroxisome biogenesis protein 1
Sequence

MLPYSIRHFISADVHSWVYIKTYSANIKEDEPLVTISPLKFKMHVKDAHDSSKLVSQEVD
TSRITRIPSENGDFFQKARYSENKNIRGADIESISESVSRQKFFIKHWLIGHLKEMGLHA
SHTEMNSIVLPTNILLHLEATDKEGTKGVEFLYFLKLTSENSNFNDSQLNIETTWSVPTS
NADDLELHFGKFELGEPVSFDSLVDSGSSDGFKLTRSSLGWMENAMSDVTKRLSVLLSAT
SLRLFNRIKFPFPGHVIVYGPRGSGKTALTRASAKYFEDHKDILAHIIYIDCSKLALGKA
KETRQEIEDSMSEALLHSPSIIIFDDLDSVVSVSSDPQVSQSSSSSDSLVQYLADIMDEY
KDKIQNTCGYGPIAFMASVQSLQSLPQDLTSSGYFFFSIFLQSVLVESLTSSMLIKTRFH
LAGRFDFHIELSALAVPERKALLQHQVEEHDLLCSEEVLSEIASKCEGYDAYDLEILVDR
AVHTAAYRFLLPSNACHNSLKRTLLMEDFFKAMHGFLPVAMRDLRKYAPDDKDGGWEDVG
GLDEAVTIIKETLELPSKYPNIFTRAPVRLRSNILLYGPPGCGKTHIVRAAAAACSLRFI
SVKGPELLNKYIGSSEQSVRDFFAKAVAAAPCLLFFDEFDSIAPQRGTHSAGVSDRVVNQ
FLTELDGVETLTGVFVFAATSKPQLIDAALLRPGRFDRLVFCDFPRWDERLEILKVHSRT
VSLASDASLEDVASLTEGFTGADLAAILTDAGLAAIHELLDNQENGVPETEPCISKELLM
SVTRKARPSTPADEKMRYDREFGEFVSSRKSISTKVTSFLFLNPQKSNHDISNEIHWIIT
GRIWCRQESQKAKRLH

Transcript Sequence

Transcript ID

Zm00001d049974_T041
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:56336280:56343702:1 gene:Zm00001d049974 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peroxisome biogenesis protein 1
Sequence

GCCATGAGCGGCGGCGGGCTGGAAGTGCAGGTTCACGTGGTGGGCGGCGCCCGGAGCTGC
TTTGCCGCGCTCCCGCTTCACCTCATCCACGACTTGGAGCGCACCTCAGCCACCGGCGAC
CTCCCGCCCGTCCTCGCGCTCGAACTTCGCGGTCCCGCCGGCGCCCGCTGGTCCCTCGCC
TGGTCCGGCGCCGCTTCCCGATCCAGCGCCATCGAGGTTGCACAAGAGTTGGCAGACTGC
ATCTCGCTGCCTGATGGAACTATAGCACAGTTGAGCGTAGCTCGTTCTCTGGCCAAAGCT
GACTCGATCAGTATTGAACCCTACAGTGAGGATGACTGGGAGATACTGGAGAGCCGTGCT
GATTTGGCTGAAGAAACAATCTTGAAGCAGGTTGGCATCGTTTATGAGGGCATGAAATTC
CCATTGTGGTTGGATGGACATAATATTGTGAAGTTTGTTGTCTTGTCATCTTTCCCTGAG
AAGACAGTTGGTATATATATACACATATATATTTTGGCATCATTGTGCTAACTTATACAA
CTTGTGTTATCACCATTATTTTATGTTCTTTTCAATATCCTTTTACATATTATACCGCTC
AAGGGTGATGTATTTGTTCATCTTTCTATATGACACTAAGTTTGCATGAATTCATTTTGA
AATAGGTTACTGACACTTGTTAATAAGTAATTGTGCTGTAATCATGGTAGAAAGCAAATA
TTGTCTACTTGACCAAATACAGTAACTCGTTAGCTTCTGAGTTAAGCTTCCAGAAGACAT
TCTTGATTCACCTGTACAAATTTATTCTGTCCATTTTCCTGTCTACTTTGGAATTTGGCA
CTAGATGATCATGGATTCTACAATATCCTAAAACTAATAACCTATAGCACCTAACTTGGG
GATACCCATCTACATCATAATTCATGCTGGGTGCCTAATGGAATTATTGTCTTTAATGTT
TATATTAACTTCTGCCAAACATGTTATATAGCCTAACATATCTTACTAGTTTGTAGCAGC
TACATTTTTCCAAAGTTAGATACATAGATATATATTTAAAAAGTCCAGGTTATTTACATC
TTATCCCTTCTAATAAAATGTTTCAGAATTTAATGTATGAATATCAATTCTGATACATTT
ATATTGTCTGCTGAGTAGTACTATAAGTAATGTACACCTTATGAAGGAAGCTAAAGAATT
TTTTTTTAAAAAAAAACTGTGGCATCGGATGAGTTGTTCCAGCATTCTATATAATAGTAT
GTAATGTTATTAATCACATAGTATGTAATCTGTTCAATATTGTTCCTTTTTTTTAATTTG
TTAAGTTTATCTATTGCTTAGGATCCACTGTGTTTTTCTTTCTTTAGTTCAACTTGTACC
AGGCACTGAAGTTGTTGTTGCACCTAAAAAACGAAAAGAGAAGCCTTCTCAGGATCTACA
AAAGCAAAGTGCACTGAAAGAACAAGTCAAAATAAAGGCACTCCTGCGTGTTCAAGCAGC
TGATAGGAAGTATGCACATACATTCAAATATGAAGGTGTCGAGATAGGTGTGGTTGTCAG
CTATGCTGTGCTAATTCATCCTGATACAGCTGCAAGTATTTCAGTTGGCAATCTCCAATT
AGTCGCTGTTTCACCTAAATCATCAAAGAAAGGACTACCTCTAAAAGGCAAAGAAGTTGG
ACGAAAAAAAGGAATTTCAGTAACTAAAGAAAGGTCCCATGAAGCCATTGTTTATATCTT
ACTTTCAGACTCTGTTGCAAAAGGGCATGTTATGCTTCCGTACTCTATTCGTCACTTCAT
AAGTGCTGATGTACATTCATGGGTATATATTAAGACATATTCAGCCAACATCAAGGAGGA
TGAACCTCTAGTGACAATATCTCCTTTAAAGTTCAAGATGCATGTGAAAGATGCTCATGA
TAGCAGTAAATTAGTCAGTCAGGAAGTGGACACTTCGAGGATAACCAGAATTCCTTCAGA
AAATGGTGATTTCTTCCAGAAAGCTCGTTACAGTGAAAACAAAAATATTCGAGGTGCAGA
TATTGAGAGCATTTCTGAATCAGTGTCAAGGCAGAAATTTTTTATTAAGCATTGGCTTAT
TGGGCACCTTAAAGAAATGGGCTTGCATGCTAGCCATACTGAGATGAATTCAATAGTCTT
GCCAACCAATATTTTGCTCCATTTGGAAGCGACAGATAAAGAAGGAACCAAAGGAGTTGA
ATTCTTATACTTTCTAAAGCTTACATCTGAAAATTCTAATTTCAACGATTCACAACTTAA
TATTGAGACTACTTGGAGTGTTCCAACCAGCAATGCTGATGATCTTGAACTGCATTTTGG
GAAGTTCGAGCTTGGCGAGCCTGTATCTTTTGATTCCCTAGTGGACAGTGGTTCCAGTGA
TGGTTTCAAGCTGACTCGGTCTTCTTTAGGCTGGATGGAGAATGCAATGTCAGATGTGAC
AAAAAGGTTATCTGTGCTCTTATCAGCAACTAGCCTAAGGTTATTTAACAGAATAAAGTT
CCCCTTTCCTGGACATGTTATTGTATATGGACCTCGAGGTTCTGGCAAAACTGCTTTGAC
CAGGGCTTCTGCAAAATACTTTGAGGACCATAAAGATATCTTGGCGCACATAATATACAT
TGATTGTTCCAAACTTGCACTTGGCAAGGCTAAGGAGACAAGGCAAGAAATTGAAGACAG
CATGTCTGAAGCACTGCTTCATTCACCTTCGATCATCATATTTGATGATCTGGACAGTGT
AGTTTCAGTCTCCTCAGATCCTCAAGTGTCTCAATCATCCAGTTCTTCTGATTCACTTGT
TCAATATTTGGCTGACATTATGGATGAGTACAAGGATAAGATTCAAAATACATGCGGGTA
TGGACCTATCGCGTTTATGGCTTCAGTTCAGTCACTTCAGAGTCTTCCTCAAGACTTAAC
CTCTTCTGGTTACTTCTTTTTTTCTATTTTTCTTCAAAGTGTGCTGGTTGAGTCACTGAC
TTCAAGTATGCTAATAAAAACACGTTTTCACCTTGCAGGAAGATTTGATTTCCATATTGA
GCTTTCTGCTCTTGCAGTACCTGAGCGCAAAGCACTATTGCAACATCAAGTTGAGGAGCA
TGATTTATTGTGTTCTGAGGAAGTTCTGTCAGAGATAGCATCAAAATGTGAAGGTTATGA
TGCATATGACTTGGAAATTTTGGTTGATAGGGCTGTGCACACTGCTGCTTATCGCTTTCT
TCTGCCTTCTAATGCTTGTCACAACTCTCTGAAACGAACTTTGTTGATGGAAGATTTCTT
TAAAGCAATGCATGGCTTCCTTCCAGTCGCCATGCGTGATCTTAGGAAATATGCTCCTGA
TGATAAAGATGGTGGTTGGGAGGATGTTGGAGGGCTAGATGAAGCAGTAACTATCATTAA
AGAGACTCTTGAATTGCCGTCAAAATACCCAAATATCTTTACCAGGGCACCTGTGCGGTT
GCGGTCAAACATTCTCCTGTATGGACCACCTGGATGTGGTAAAACTCACATTGTGAGAGC
TGCGGCTGCTGCTTGTTCTTTGCGATTCATTTCAGTCAAGGGTCCAGAGCTATTGAATAA
GTATATTGGTTCATCTGAGCAATCTGTTCGCGACTTTTTTGCAAAGGCCGTTGCTGCAGC
ACCTTGCCTATTATTCTTTGATGAATTTGACTCCATTGCACCCCAGCGAGGAACTCATAG
TGCAGGAGTTTCTGATCGTGTAGTTAATCAGTTCTTGACGGAACTGGATGGTGTGGAAAC
CTTAACTGGAGTATTCGTATTTGCAGCTACGAGCAAGCCACAGCTAATCGATGCTGCGCT
CTTGCGACCTGGAAGGTTTGATCGTCTAGTCTTTTGTGATTTCCCTCGATGGGATGAACG
TTTAGAAATTCTGAAGGTGCATTCTAGGACGGTTTCACTGGCAAGTGATGCCAGTCTCGA
AGATGTTGCTTCTCTGACCGAAGGATTTACTGGTGCTGATCTCGCTGCTATTCTAACGGA
TGCTGGACTAGCTGCAATTCATGAACTTTTGGACAACCAGGAGAACGGTGTTCCAGAAAC
CGAACCGTGCATCAGCAAAGAACTTCTCATGTCCGTCACTAGGAAGGCAAGACCTTCCAC
ACCAGCAGACGAGAAGATGCGGTATGATAGGGAGTTTGGTGAATTCGTGTCATCCAGGAA
GTCTATTTCGACAAAGGTGACCTCATTCTTATTTTTAAATCCTCAAAAGTCAAACCATGA
TATTTCCAATGAAATTCATTGGATAATTACTGGAAGAATCTGGTGCAGGCAAGAGAGTCA
AAAGGCAAAAAGGTTACACTAGCTTGAGCCTTTCCTTGGCCAATATTAATGCGCTGCAAA
ATTTGGACAGTGGCCTACATGAAGGCTGCTAACACGCGGACTTGTCAAGTCATGCGACGT
AGGCTTCCTTTCATTTGAAGAGAAACAAAATCTACAAAGAAACCTAACCAAGGCTCACTT
GTGTTAGTGTACTTGGATGGAGGAGGAAGGCCATTGGAGGGACCTGCAGGTGGTCAAAGG
TGTCATAGTAGGAAATTTTGTACGGTAATCCTGCTGTAATTAAAGTTATAACACTTGTCA
CAAATTTTGTACGGTGGTGAACGGTAGGAAATCTATACTACTTATT