Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d049809_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:4:45664408:45668447:-1 gene:Zm00001d049809 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGGGGATCCTGGGCAAAGGCTCGGGGTGGTGCTTCTGCTCCCGCGGGGCCAAGCTGGAG
CGGATCAAGTCCAGCCTCCTCGCCGCAAAGGGCGCCGCCATAGCTGCCGTATCCTTCCCC
AGTGGCGGCGGCGGAGGAGGAGCTGGAGGCAAAGGCGGGAGCGGGTTCCTCATCCACCGC
AGCCTCCTGCTCACCACGCACGGCACCATCCCTTCGGCCGCCGCGGCGGGCGCCGCCGAG
GTTCGGCTCAGCCACGGCCGCCTCCTAGCTCGCCTGGTGCCGCAAAGGTTCTTTATTACC
AGTTCTATACTTGACCTTACAATAGTTGGCCTTGATGTCGTGGATGATGACCTGAGTTCA
CATGGGCAACAGCCTCATTTTTTGAAAACTTGCTTGAACCCCAGCTTGGACCTTGGCAGT
ACGGTTTTGCTACTGGGCCACAACAGAAATGATTTGGCTGTAGGTGAGGGGAAGGTTGTA
ATAGCTACAGACAACCTTATAAAGTTCTCGATTGATGAAGTCTTGTGGCATCCTGGATCT
GCTGGGTTTGATATGCACGGCAACCTAGCTTTTATGGTCTGTGATCCCATGAAGATTGCA
CCTTCTACACCCAATGGGTATGCTTCTGCATCATCAACTGCCATTTGTACATCAAAAAAG
GATGTGCCCACACAGTTTGGGATCCCTATCCCTGCAGTATGTGAATGGTTAAAACAACAT
TGGAATGGTTGCTTGGAAGATGCTAGCAAGCCGATGATGACTCCTGCACGATTGACAACC
TGTGGAGAACGAAGTGGGTGTTCTTCCCTTGGTCGTCTTCGTTATATTAAGACTGCAGAG
GTTGAAGGTGGTGATGTCTTGTCATCATCACAGATGCCACCAAGACCAACATGGCAGCAT
GGAGCATGCAGTTCAGCATCTGCCAAGATTTCACATGGCGAAAATGATTCGATTGGCTCA
CATTCTTTCCATGGGCAACATGAGCAGAGCTCAAAAATTTGCAAACCTCATAAAGAGCAA
GCTACTTCACTTGTGGATCATTCAAGATCTATTCGCCTACCCCTTCCCTTAAAGCAAATG
CTGCCTGATGATAACAAGGATGAGGCGAACAGTCAAGCTCCGCACAGAACAGAACCATCT
AATGTGCAAATGAACTGTGGCACTCTTCACAATGTTGCTTACCATGAAAATTGCTGGAGT
GAGGTGCAGTCCAGTTCTTCTCCAGTTGTGATATCGGAAATAGGAGATGGGAGGGACGGT
TTTAGCAGCGGTGAGGAGACAATGTACTCTGCTGAAACAAGGGAAAGCCGGAACATTCCA
AGTCCAAAGGAAAAGAAAACCGGGATGGTTGGTAGATCACAGAGTCTTGTGAACCGTAGC
AAATGGGACTCGCCTAAAAGCGTTGAATCTTCGAGAGGGTTTCCCTCGAAGTCACAGACC
TTCATTCCGTTAAGGAAACCGCACCTGCAGGCCGCATCCATTTCACAGAAGAGCCAAGAT
TATTTCAGCCCGACCGTCTCGTCGAACATGAAGAAGAGGAACCTGTCCCAAACTCCCATG
AAACCCAGGCAGCGTGCTCAAGTCACCTCAAAGTGGATTACTTGA

Peptide Sequence

PEP ID

Zm00001d049809_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:4:45664408:45668447:-1 gene:Zm00001d049809 transcript:Zm00001d049809_T001 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MGILGKGSGWCFCSRGAKLERIKSSLLAAKGAAIAAVSFPSGGGGGGAGGKGGSGFLIHR
SLLLTTHGTIPSAAAAGAAEVRLSHGRLLARLVPQRFFITSSILDLTIVGLDVVDDDLSS
HGQQPHFLKTCLNPSLDLGSTVLLLGHNRNDLAVGEGKVVIATDNLIKFSIDEVLWHPGS
AGFDMHGNLAFMVCDPMKIAPSTPNGYASASSTAICTSKKDVPTQFGIPIPAVCEWLKQH
WNGCLEDASKPMMTPARLTTCGERSGCSSLGRLRYIKTAEVEGGDVLSSSQMPPRPTWQH
GACSSASAKISHGENDSIGSHSFHGQHEQSSKICKPHKEQATSLVDHSRSIRLPLPLKQM
LPDDNKDEANSQAPHRTEPSNVQMNCGTLHNVAYHENCWSEVQSSSSPVVISEIGDGRDG
FSSGEETMYSAETRESRNIPSPKEKKTGMVGRSQSLVNRSKWDSPKSVESSRGFPSKSQT
FIPLRKPHLQAASISQKSQDYFSPTVSSNMKKRNLSQTPMKPRQRAQVTSKWIT

Transcript Sequence

Transcript ID

Zm00001d049809_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:45664408:45668447:-1 gene:Zm00001d049809 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ACGTTCGGTGTGTGAGGCCACGACTCCCGTCCCCTTCGAGATTCCGCACGAAACGAGTCC
ACTTCGTATCGCCGCCCGGTGGTCCGCCGCCGCTCGCCGGAGTAGCAGCAGCAGCCGTAG
CAAGGAGTAGGCAAGAGACACCGGATGGGGATCCTGGGCAAAGGCTCGGGGTGGTGCTTC
TGCTCCCGCGGGGCCAAGCTGGAGCGGATCAAGTCCAGCCTCCTCGCCGCAAAGGGCGCC
GCCATAGCTGCCGTATCCTTCCCCAGTGGCGGCGGCGGAGGAGGAGCTGGAGGCAAAGGC
GGGAGCGGGTTCCTCATCCACCGCAGCCTCCTGCTCACCACGCACGGCACCATCCCTTCG
GCCGCCGCGGCGGGCGCCGCCGAGGTTCGGCTCAGCCACGGCCGCCTCCTAGCTCGCCTG
GTGCCGCAAAGGTTCTTTATTACCAGTTCTATACTTGACCTTACAATAGTTGGCCTTGAT
GTCGTGGATGATGACCTGAGTTCACATGGGCAACAGCCTCATTTTTTGAAAACTTGCTTG
AACCCCAGCTTGGACCTTGGCAGTACGGTTTTGCTACTGGGCCACAACAGAAATGATTTG
GCTGTAGGTGAGGGGAAGGTTGTAATAGCTACAGACAACCTTATAAAGTTCTCGATTGAT
GAAGTCTTGTGGCATCCTGGATCTGCTGGGTTTGATATGCACGGCAACCTAGCTTTTATG
GTCTGTGATCCCATGAAGATTGCACCTTCTACACCCAATGGGTATGCTTCTGCATCATCA
ACTGCCATTTGTACATCAAAAAAGGATGTGCCCACACAGTTTGGGATCCCTATCCCTGCA
GTATGTGAATGGTTAAAACAACATTGGAATGGTTGCTTGGAAGATGCTAGCAAGCCGATG
ATGACTCCTGCACGATTGACAACCTGTGGAGAACGAAGTGGGTGTTCTTCCCTTGGTCGT
CTTCGTTATATTAAGACTGCAGAGGTTGAAGGTGGTGATGTCTTGTCATCATCACAGATG
CCACCAAGACCAACATGGCAGCATGGAGCATGCAGTTCAGCATCTGCCAAGATTTCACAT
GGCGAAAATGATTCGATTGGCTCACATTCTTTCCATGGGCAACATGAGCAGAGCTCAAAA
ATTTGCAAACCTCATAAAGAGCAAGCTACTTCACTTGTGGATCATTCAAGATCTATTCGC
CTACCCCTTCCCTTAAAGCAAATGCTGCCTGATGATAACAAGGATGAGGCGAACAGTCAA
GCTCCGCACAGAACAGAACCATCTAATGTGCAAATGAACTGTGGCACTCTTCACAATGTT
GCTTACCATGAAAATTGCTGGAGTGAGGTGCAGTCCAGTTCTTCTCCAGTTGTGATATCG
GAAATAGGAGATGGGAGGGACGGTTTTAGCAGCGGTGAGGAGACAATGTACTCTGCTGAA
ACAAGGGAAAGCCGGAACATTCCAAGTCCAAAGGAAAAGAAAACCGGGATGGTTGGTAGA
TCACAGAGTCTTGTGAACCGTAGCAAATGGGACTCGCCTAAAAGCGTTGAATCTTCGAGA
GGGTTTCCCTCGAAGTCACAGACCTTCATTCCGTTAAGGAAACCGCACCTGCAGGCCGCA
TCCATTTCACAGAAGAGCCAAGATTATTTCAGCCCGACCGTCTCGTCGAACATGAAGAAG
AGGAACCTGTCCCAAACTCCCATGAAACCCAGGCAGCGTGCTCAAGTCACCTCAAAGTGG
ATTACTTGATGCATTCGCCTGCCCCAGGAATCATACAAAGATAACATGTTCTTGGGTTCA
CCCGGTCCCATGCTGCATTTCTTTTTCTTTTCATTTATCCCTTTTAGATGCATTTGTAAA
TGCATTCTAGTCATGGACTATTCTAGTCATTCTTTATTTAGGGTACGTTAGGAAATGCTG
CTCTTTACCCTGCAATTCTCTACTGAAGGGTTAGACAGGTTGCCATCACAAAATACAACG
TTTTCCCTCCTCCTGACTCCCGCAGCTGGGCGGATACAAGCCTGGGCCAACCTGTCCATG
TCCCGGGATATGATTCATATATCTCTAGTTATATTTATTATTTCTAGATCAAAATATATT
AGAAGAATATTATATCCAATAGACCGATCCGGGCGTGATCGGATCCTAAATTGGCCTCTA
AGGAGAGGTGAGAAGTGTGGGACCTGGTCTTCTCCAGTCTTCACTCCCAAGTGTCAGCTC
AAGGGATAATTCACAGGAATGGTTTGCCCTTGCTGGATTGCTCCTGAGTCCTGAAGCTCT
CTGCAAGGCTGTGCTGCCCTTTTGTTGAGGTGAATAAGGTGACAGCTCTGCAACTGTGTT
GTTTCCCTTTCTGTGTTGGAAGGTGAATAAGGTGGCGTCTTATGCTTTAACAACCATCAC
CAGTCCAAGTCGGAGACCTCCACCCCTGGGCCCTGGCGGCGGAGCCACAGGACGAGGAGA
GCTAGCACCGGACGGTCATCAGGAAGACGACAAACCGCTGAGGCGCAGTCGATGCCGACG
GTACAGGTGGTCTCTCAGGTAGGCCAAGCCGCCAGGGCTTCGCATGCAGTATCCCAGAAG
GCTAGAAACATAGTTTTTCACTTGATCGTGCAGCGATGCAGGTGTAAAATGTAAGCATGA
AACAGTTGGTTCAAAAAAAATTAAGTGATAGAGCCCTCCTAACATGTCAAACTAACAACA
CTTAAAGATAGGAGTGTTACAATCTCTCTATGCAGTGTGGATGAAGTCTTTCCATGG