Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d049753_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:4:43110911:43119167:1 gene:Zm00001d049753 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:sugary1 description:Sugary1

Sequence

ATGCTCTACGGATACAGGTTCGATGGCGTGTTCGCCCCTGAGCGCGGACAGTACTACGAT
GTGTCCAACGTTGTGGTGGATCCATACGCTAAGGCAGTGGTAAGCCGAGGTGAATATGGT
GTGCCTGCGCCTGGTGGTAGTTGTTGGCCTCAAATGGCTGGTATGATCCCTCTTCCCTAT
AATAAGTTTGATTGGCAAGGTGACCTACCCCTTGGGTACCATCAGAAGGACCTTGTCATA
TATGAAATGCATTTGCGTGGATTCACAAAGCACAACTCAAGCAAGACAAAACACCCAGGA
ACTTACATTGGTGCTGTGTCAAAGCTTGACCATCTAAAGGAACTTGGAGTGAACTGTATA
GAGCTAATGCCCTGCCATGAGTTCAATGAGCTAGAGTACTTCAGCTCCTCTTCGAAGATG
AACTTCTGGGGATATTCCACAATAAATTTTTTCTCACCAATGGCAAGATATTCTTCAAGT
GGCATAAGAGACTCTGGATGTGGTGCCATAAATGAATTTAAAGCTTTTGTAAGGGAGGCC
CACAAACGGGGAATTGAGGTGATCATGGATGTTGTCTTCAATCATACAGCTGAAGGTAAT
GAGAAAGGCCCAATATTATCCTTTAGGGGGATAGATAATAGTACATACTACATGCTTGCA
CCTAAGGGAGAGTTTTATAATTATTCTGGTTGTGGAAATACCTTCAATTGTAATCATCCT
GTAGTCCGTGAATTTATAGTGGATTGCTTGAGATACTGGGTAACAGAAATGCATGTTGAT
GGTTTTCGTTTTGACCTTGCATCTATACTGACCAGAGGATGCAGTCTATGGGATCCAGTT
AATGTGTATGGAAGTCCAATGGAAGGTGACATGATTACGACAGGGACACCTCTTGTTGCC
CCACCACTTATTGACATGATTAGCAATGACCCAATTCTTGGAAATGTCAAGCTCATTGCT
GAAGCATGGGATGCAGGAGGTCTCTATCAAGTTGGTCAGTTTCCTCACTGGAACGTTTGG
TCAGAGTGGAATGGAAAGTATCGCGATACCGTGCGTCAGTTCATCAAAGGCACAGATGGA
TTTGCTGGTGCTTTTGCTGAATGCCTATGTGGAAGTCCACAGTTATACCAGGCAGGGGGG
AGGAAGCCTTGGCACAGTATCAACTTTGTATGTGCACACGATGGATTTACACTGGCTGAT
TTGGTCACATACAATAGCAAGTACAACTTGTCAAATGGTGAGGACAACAGAGATGGGGAA
AATCATAATCTTAGCTGGAATTGTGGGGAGGAAGGAGAATTTGCAAGTCTGTCAGTCCGA
AGATTAAGGAAGAGGCAAATGCGCAATTTCTTTGTTTGTCTTATGGTTTCTCAGGGAGTT
CCAATGTTCTACATGGGCGATGAATATGGTCACACAAAGGGAGGGAACAACAATACGTAC
TGCCATGACCATTATGTCAATTATTTCCGTTGGGATAAGAAGGAAGAACAATCCTCTGAT
TTGTACAGATTCTGCCGTCTCATGACCAAATTCCGCAAAGAATGTGAATCTCTTGGCCTT
GAGGACTTCCCGACTTCAGAACGGTTGAAATGGCACGGTCATCAGCCCGGGAAGCCTGAC
TGGTCAGAGGCAAGCCGATTCGTTGCCTTCACCATGAAGGACGAAACCAAAGGCGAGATC
TACGTGGCCTTCAACACCAGTCACCTTCCGGTGGTTGTTGGGCTTCCAGAGCGCTCTGGG
TTCCGATGGGAGCCGGTGGTGGACACCGGCAAGGAGGCACCATATGACTTCCTCACCGAT
GGCCTGCCAGATCGTGCTGTCACCGTCTACCAGTTCTCTCATTTCCTCAACTCCAATCTC
TATCCTATGCTCAGCTACTCCTCCATCATCCTTGTATTGCGCCCTGATGTCTGA

Peptide Sequence

PEP ID

Zm00001d049753_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:4:43110911:43119167:1 gene:Zm00001d049753 transcript:Zm00001d049753_T003 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:sugary1 description:Sugary1

Sequence

MLYGYRFDGVFAPERGQYYDVSNVVVDPYAKAVVSRGEYGVPAPGGSCWPQMAGMIPLPY
NKFDWQGDLPLGYHQKDLVIYEMHLRGFTKHNSSKTKHPGTYIGAVSKLDHLKELGVNCI
ELMPCHEFNELEYFSSSSKMNFWGYSTINFFSPMARYSSSGIRDSGCGAINEFKAFVREA
HKRGIEVIMDVVFNHTAEGNEKGPILSFRGIDNSTYYMLAPKGEFYNYSGCGNTFNCNHP
VVREFIVDCLRYWVTEMHVDGFRFDLASILTRGCSLWDPVNVYGSPMEGDMITTGTPLVA
PPLIDMISNDPILGNVKLIAEAWDAGGLYQVGQFPHWNVWSEWNGKYRDTVRQFIKGTDG
FAGAFAECLCGSPQLYQAGGRKPWHSINFVCAHDGFTLADLVTYNSKYNLSNGEDNRDGE
NHNLSWNCGEEGEFASLSVRRLRKRQMRNFFVCLMVSQGVPMFYMGDEYGHTKGGNNNTY
CHDHYVNYFRWDKKEEQSSDLYRFCRLMTKFRKECESLGLEDFPTSERLKWHGHQPGKPD
WSEASRFVAFTMKDETKGEIYVAFNTSHLPVVVGLPERSGFRWEPVVDTGKEAPYDFLTD
GLPDRAVTVYQFSHFLNSNLYPMLSYSSIILVLRPDV

Transcript Sequence

Transcript ID

Zm00001d049753_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:43110911:43119167:1 gene:Zm00001d049753 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:sugary1 description:Sugary1

Sequence

CCGCGCCGCTCGGCGCCACCGCGCTCCGCGGCGGTGTCAACTTCGCCGTCTACTCCAGCG
GTGCCTCCGCCGCGTCGCTGTGCCTCTTCGCTCCCGGCGACCTCAAGGCGGATAGGGTGA
CCGAGGAGGTGCCCCTCGATCCCCTGCTCAACCGAACGGGAAACGTGTGGCACGTGTTCA
TCCACGGGGACCAGCTGCACGGCATGCTCTACGGATACAGGTTCGATGGCGTGTTCGCCC
CTGAGCGCGGACAGTACTACGATGTGTCCAACGTTGTGGTGGATCCATACGCTAAGGCAG
TGGTAAGCCGAGGTGAATATGGTGTGCCTGCGCCTGGTGGTAGTTGTTGGCCTCAAATGG
CTGGTATGATCCCTCTTCCCTATAATAAGTTTGATTGGCAAGGTGACCTACCCCTTGGGT
ACCATCAGAAGGACCTTGTCATATATGAAATGCATTTGCGTGGATTCACAAAGCACAACT
CAAGCAAGACAAAACACCCAGGAACTTACATTGGTGCTGTGTCAAAGCTTGACCATCTAA
AGGAACTTGGAGTGAACTGTATAGAGCTAATGCCCTGCCATGAGTTCAATGAGCTAGAGT
ACTTCAGCTCCTCTTCGAAGATGAACTTCTGGGGATATTCCACAATAAATTTTTTCTCAC
CAATGGCAAGATATTCTTCAAGTGGCATAAGAGACTCTGGATGTGGTGCCATAAATGAAT
TTAAAGCTTTTGTAAGGGAGGCCCACAAACGGGGAATTGAGGTGATCATGGATGTTGTCT
TCAATCATACAGCTGAAGGTAATGAGAAAGGCCCAATATTATCCTTTAGGGGGATAGATA
ATAGTACATACTACATGCTTGCACCTAAGGGAGAGTTTTATAATTATTCTGGTTGTGGAA
ATACCTTCAATTGTAATCATCCTGTAGTCCGTGAATTTATAGTGGATTGCTTGAGATACT
GGGTAACAGAAATGCATGTTGATGGTTTTCGTTTTGACCTTGCATCTATACTGACCAGAG
GATGCAGTCTATGGGATCCAGTTAATGTGTATGGAAGTCCAATGGAAGGTGACATGATTA
CGACAGGGACACCTCTTGTTGCCCCACCACTTATTGACATGATTAGCAATGACCCAATTC
TTGGAAATGTCAAGCTCATTGCTGAAGCATGGGATGCAGGAGGTCTCTATCAAGTTGGTC
AGTTTCCTCACTGGAACGTTTGGTCAGAGTGGAATGGAAAGTATCGCGATACCGTGCGTC
AGTTCATCAAAGGCACAGATGGATTTGCTGGTGCTTTTGCTGAATGCCTATGTGGAAGTC
CACAGTTATACCAGGCAGGGGGGAGGAAGCCTTGGCACAGTATCAACTTTGTATGTGCAC
ACGATGGATTTACACTGGCTGATTTGGTCACATACAATAGCAAGTACAACTTGTCAAATG
GTGAGGACAACAGAGATGGGGAAAATCATAATCTTAGCTGGAATTGTGGGGAGGAAGGAG
AATTTGCAAGTCTGTCAGTCCGAAGATTAAGGAAGAGGCAAATGCGCAATTTCTTTGTTT
GTCTTATGGTTTCTCAGGGAGTTCCAATGTTCTACATGGGCGATGAATATGGTCACACAA
AGGGAGGGAACAACAATACGTACTGCCATGACCATTATGTCAATTATTTCCGTTGGGATA
AGAAGGAAGAACAATCCTCTGATTTGTACAGATTCTGCCGTCTCATGACCAAATTCCGCA
AAGAATGTGAATCTCTTGGCCTTGAGGACTTCCCGACTTCAGAACGGTTGAAATGGCACG
GTCATCAGCCCGGGAAGCCTGACTGGTCAGAGGCAAGCCGATTCGTTGCCTTCACCATGA
AGGACGAAACCAAAGGCGAGATCTACGTGGCCTTCAACACCAGTCACCTTCCGGTGGTTG
TTGGGCTTCCAGAGCGCTCTGGGTTCCGATGGGAGCCGGTGGTGGACACCGGCAAGGAGG
CACCATATGACTTCCTCACCGATGGCCTGCCAGATCGTGCTGTCACCGTCTACCAGTTCT
CTCATTTCCTCAACTCCAATCTCTATCCTATGCTCAGCTACTCCTCCATCATCCTTGTAT
TGCGCCCTGATGTCTGAAAGAAGCAGATACAATAGAGTATACTATAGCGGTTGTTCTCTA
GGCTGTAGCATGCAGTGGAAACTGGAAAATGTTGGGGTTGCTCTGTTGTCGGTAGTTTAC
ATGCGCATGTCGGTATGTGTAGCTAAAGCTGGTGGATCTCAGTTCTCAGATCGGACTCGA
GACGGGGAAAACCATTGCCCAGTTGGCTGGTTCTCTGAAGTTTTGTTTGGTGTAAAGAAA
TGGTGGTCCATCATCTACTCAAATTTTTTTCTCTTTTTTAATGAAATAAGTT