Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d049707_T021
CDS Infomation

cds chromosome:B73_RefGen_v4:4:40971046:40976037:1 gene:Zm00001d049707 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phospholipase SGR2
Sequence

ATGAAATTTCTAAAGAGAAATCCTGGTTACAGTGGAAAGGTTTCATTGTATGGCCACTCG
TTAGGAAGTGTTTTGTCGTATGATATACTTTGTCATCAAGAATCCCTTTGGGCCCCATTT
CCAACAGAGTATCTGAACATGGAAACATCTGATCGAAATCAAGGAGCAAAATCAGCCAAT
GAAGCTGATCTGCATGATTCAGGCGCAAAGGATCATGATACTTCTAGTCTAGGGTATTCT
TGTGCTGATAATGAAAACAGTGTCATTGATGAAGATAGCACCAGAACTGACGTGTCATGT
ATGGACAGCATCCTCCCATCATGTGTGCTTGAGGATTCACCAAATAACCATGACACTGTC
GTGCCTCGTGGTGCGGTTGTTGCTGATCAAAATGGAGAAGAAAAGAAGGTTGAGAATTAT
CAGTCGGTGTATGCTGAGGAAGGAACAACTTCAGGTGTAATCACAAAAAAGGCTGAAGGA
TCAAGCATTTCAAGATCTGCTAAGGAAGTCCATGAAGAGGTCCTCGACAAAGAAAAATTG
ATGGTCCTTGCCAAAGACAAATTGATCCTTTCACTAGAAGAAGAGGTGAAATGTCTTAAA
GCTAAACTAGATCAGCTTGAACAACATAATCATCTAGTGACTGAAAACACCAGTGGTGTT
GAGTATCATGAAGGGCAAAATTATAATCATGCCTTGAACTCTGGCAAACTTTTCGTGGCA
CAAGAAAGTACAAACCAGTCCTACTCACCGCAAATCAAATACACGAAACTAAACTTTAAG
GTTGATACATTCTTTGCTGTTGGATCTCCCTTGGGTGTCTTCCTTTCCCTGCGTAATGTC
CGTATTGGTATTGGCAAAGGACAAGACTATTGGCAAGATAAGAACGTAATTGAAGAGATG
CCATGCTGCCGGCAGATGTTCAATATTTTTCATCCTTTTGACCCTGTAGCATACAGAATT
GAACCACTTGTATGTGAAGATTATCTAAAGAAGCGTCCTGTAATTGTTCCCTACCATAGA
GGCGGAAAGAGGATACATGTTGGAGTGCAGGAGTTCAGAGAAGATATTTCTGCACGTTCT
CAAGCAATTGCCCGTCAATTGAAGTCACTGAAGGTCAAAGCAGTAGCTGCTATACTAGCA
TTGAGCAGAAATGACACAGAAGAGGATGGTGAGAGTGCTAATGAGAAAGAAAAATCATAT
GGTTCCATTATGATGGAAAGGTTGACCAGTTCACCGAATGGTCGAATTGATCATGTGCTT
CAGGAGAAAACATTTCAGCATCCATATCTATCTGCTTTGGGAGCTCATACCAACTATTGG
CGAGATCATGATACTGCTCTCTTCATTCTCAAACATTTGTATCGTGATATACCCGAGGAT
CCTCCAAGCGATGTCATTGAAAGGATGCCTATTAAACTATTTTATGAGAGAGATCCAGTT
GAGGAAGAAACGCCTGTGACGTTTTCAGATCATGCAGCAATTAAGGAATTCTGCAGAAAG
GTGAAAGCTTACTCAAGAAAAATGGAGGATGATGCCAACTGCCAAGCCTCGTGA

Peptide Sequence

PEP ID

Zm00001d049707_P021
PEP Infomation

pep chromosome:B73_RefGen_v4:4:40971046:40976037:1 gene:Zm00001d049707 transcript:Zm00001d049707_T021 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phospholipase SGR2
Sequence

MKFLKRNPGYSGKVSLYGHSLGSVLSYDILCHQESLWAPFPTEYLNMETSDRNQGAKSAN
EADLHDSGAKDHDTSSLGYSCADNENSVIDEDSTRTDVSCMDSILPSCVLEDSPNNHDTV
VPRGAVVADQNGEEKKVENYQSVYAEEGTTSGVITKKAEGSSISRSAKEVHEEVLDKEKL
MVLAKDKLILSLEEEVKCLKAKLDQLEQHNHLVTENTSGVEYHEGQNYNHALNSGKLFVA
QESTNQSYSPQIKYTKLNFKVDTFFAVGSPLGVFLSLRNVRIGIGKGQDYWQDKNVIEEM
PCCRQMFNIFHPFDPVAYRIEPLVCEDYLKKRPVIVPYHRGGKRIHVGVQEFREDISARS
QAIARQLKSLKVKAVAAILALSRNDTEEDGESANEKEKSYGSIMMERLTSSPNGRIDHVL
QEKTFQHPYLSALGAHTNYWRDHDTALFILKHLYRDIPEDPPSDVIERMPIKLFYERDPV
EEETPVTFSDHAAIKEFCRKVKAYSRKMEDDANCQAS

Transcript Sequence

Transcript ID

Zm00001d049707_T021
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:40971046:40976037:1 gene:Zm00001d049707 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phospholipase SGR2
Sequence

GGTCTCGAACCAGTTGAACAAACTGTACATGAAATTTCTAAAGAGAAATCCTGGTTACAG
TGGAAAGGTTTCATTGTATGGCCACTCGTTAGGAAGTGTTTTGTCGTATGATATACTTTG
TCATCAAGAATCCCTTTGGGCCCCATTTCCAACAGAGTATCTGAACATGGAAACATCTGA
TCGAAATCAAGGAGCAAAATCAGCCAATGAAGCTGATCTGCATGATTCAGGCGCAAAGGA
TCATGATACTTCTAGTCTAGGGTATTCTTGTGCTGATAATGAAAACAGTGTCATTGATGA
AGATAGCACCAGAACTGACGTGTCATGTATGGACAGCATCCTCCCATCATGTGTGCTTGA
GGATTCACCAAATAACCATGACACTGTCGTGCCTCGTGGTGCGGTTGTTGCTGATCAAAA
TGGAGAAGAAAAGAAGGTTGAGAATTATCAGTCGGTGTATGCTGAGGAAGGAACAACTTC
AGGTGTAATCACAAAAAAGGCTGAAGGATCAAGCATTTCAAGATCTGCTAAGGAAGTCCA
TGAAGAGGTCCTCGACAAAGAAAAATTGATGGTCCTTGCCAAAGACAAATTGATCCTTTC
ACTAGAAGAAGAGGTGAAATGTCTTAAAGCTAAACTAGATCAGCTTGAACAACATAATCA
TCTAGTGACTGAAAACACCAGTGGTGTTGAGTATCATGAAGGGCAAAATTATAATCATGC
CTTGAACTCTGGCAAACTTTTCGTGGCACAAGAAAGTACAAACCAGTCCTACTCACCGCA
AATCAAATACACGAAACTAAACTTTAAGGTTGATACATTCTTTGCTGTTGGATCTCCCTT
GGGTGTCTTCCTTTCCCTGCGTAATGTCCGTATTGGTATTGGCAAAGGACAAGACTATTG
GCAAGATAAGAACGTAATTGAAGAGATGCCATGCTGCCGGCAGATGTTCAATATTTTTCA
TCCTTTTGACCCTGTAGCATACAGAATTGAACCACTTGTATGTGAAGATTATCTAAAGAA
GCGTCCTGTAATTGTTCCCTACCATAGAGGCGGAAAGAGGATACATGTTGGAGTGCAGGA
GTTCAGAGAAGATATTTCTGCACGTTCTCAAGCAATTGCCCGTCAATTGAAGTCACTGAA
GGTCAAAGCAGTAGCTGCTATACTAGCATTGAGCAGAAATGACACAGAAGAGGATGGTGA
GAGTGCTAATGAGAAAGAAAAATCATATGGTTCCATTATGATGGAAAGGTTGACCAGTTC
ACCGAATGGTCGAATTGATCATGTGCTTCAGGAGAAAACATTTCAGCATCCATATCTATC
TGCTTTGGGAGCTCATACCAACTATTGGCGAGATCATGATACTGCTCTCTTCATTCTCAA
ACATTTGTATCGTGATATACCCGAGGATCCTCCAAGCGATGTCATTGAAAGGATGCCTAT
TAAACTATTTTATGAGAGAGATCCAGTTGAGGAAGAAACGCCTGTGACGTTTTCAGATCA
TGCAGCAATTAAGGAATTCTGCAGAAAGGTGAAAGCTTACTCAAGAAAAATGGAGGATGA
TGCCAACTGCCAAGCCTCGTGATGGATTTTTAGTCTCTCGTTACGGCCTCACACGTTCCT
GGGCAAGCAGAAGCAAGATGCAGACATGGGAAGGAAGAACGAATCGTGATCCCAAGAAAA
GAATCCACGAGATGCAGTTCCACGCTTCACGCCAGAATCAGAGCACTTGGAGAATGTTGT
ACGGAGTAGAGTCGGTTGCCTTGCTCGTTCCTACATTTATAATGCAGTGTTGTACATAGA
ACGTCCGACTGTAGTTTTGTGCATCTTGAACGTAATGTTATGCTGCCTGCTTTAAATGCT
ACAGAATATATTTTTGCTTTT