Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d049642_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:4:38570347:38574015:1 gene:Zm00001d049642 gene_biotype:protein_coding transcript_biotype:protein_coding description:Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform
Sequence

ATGATTAAGCAGATCCTCGGCCGGCTTCCTAAAAAGCAGGCCAAGTCCGGCGAGAAGGAG
CTGGCCGGCGCGGGCCCGTCGCTGCCCAGCCCGACGGCCGATACGAGAACCACCACCGAT
TTGACCACGTCTAGCAGGCTTGTCAGTCCCAGCAACTACGCCTCCACGGCCACGAATCAA
GGCCAGAGCTTCGTGGCGGCCAGGGCCGCCGGCGTCAGCAACGGGTTCCCGGCCTCGGCA
GGGTATGAGGCGCTGCCGAGCTTCAGGGACGTGCCGGCGCCGGAGAAACCTGGTCTGTTC
CTCAGGAAGCTGGCCATGTGCTGTGTGGTGTTCGACTTCGCGGACCCGACCAAGGACGCG
AGGGAGAAGGAAGTCAAGAGGCAGACGCTGCTTGAGCTGGTGGACTACATCACCTCGGCC
ACCGGCAAGTTCCCGGAGCACGTCGTGCCGGAGGTCATCAGGATGGTGTCTGCGAACCTG
TTCAGGGTGCCGCCCCCTGCCCCGAGAGAGAACAAGGCACTCGAGTTGTTCGATATGGAG
GAGGAAGAGCCCGTCATGGACCCGGCGTGGCCGCACCTGCAGATTGTGTATGAGCTGTTC
TTGAGGTTTATTCAGTCTCCCGAGACAGACGCGAAGCTAGCCAAGAGATACATTGATCAC
GGCTTCATTGTCAGGCTTCTCGATCTCTTTGACTCGGAGGATCCTAGGGAGAGGGAGTAC
TTGAAGACGATCCTTCACAGGATATACGGCAAGTTCATGGTGCACCGTCCATTCATCAGG
AAGGCGATCAATAATATCTTCTACAGGTTTATATTCGAGACAGAGAAGCATAATGGTATC
GCAGAGCTGTTAGAGATTTTCGGGAGTATAATTAATGGCTTTGCTTTGCCACTCAAGGAG
GAGCACAAATTGTTTTTAGTACGATCACTGATTCCACTCCACAAACCAAAATGCGTTGCC
ATGTACCATCAGCAACTGTCTTACTGTGTCACCCAGTTTGTTGAGAAAGATTGCAAGCTT
GCTGATATTGTCATTAGGGGTTTACTGAAGTATTGGCCCGTCACTAATAGCTCAAAGGAG
GTGATGTTTTTGGGTGAGCTAGAGGAGGTGCTGGAAGCTACACAGCCAGCAGAGTTCCAG
AGGTGTATGGTGCCACTTTTTCGTCAGATTTCCCGATGTTTAAGCAGTTCTCACTTTCAG
GTGGCAGAAAGAGCGCTCTTCCTATGGAACAGCAATCACATCGAGGGTTTGATCAAACAC
AACAGCAAGGTTATACTGCCCGTAGTCCTCCCAGCATTAGAACGGAACACGAAAGGCCAT
TGGAATCAGGCAGTGCAGAGCCTGAGTCTAAATGTCCGTAAAATATTCATGGACTACGAC
CCAGCACTGTTCGAGGAGTGTCGCGAGAAGTTTGAGGAAGAGGAAGCTCAAGAAGCCGGC
ATGAGGTCAAGATGTGAGGCTAGATGGAAGCGCCTAGAAGAAATTGCCTCGTCAAAGGAG
GTGAAGTAG

Peptide Sequence

PEP ID

Zm00001d049642_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:4:38570347:38574015:1 gene:Zm00001d049642 transcript:Zm00001d049642_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform
Sequence

MIKQILGRLPKKQAKSGEKELAGAGPSLPSPTADTRTTTDLTTSSRLVSPSNYASTATNQ
GQSFVAARAAGVSNGFPASAGYEALPSFRDVPAPEKPGLFLRKLAMCCVVFDFADPTKDA
REKEVKRQTLLELVDYITSATGKFPEHVVPEVIRMVSANLFRVPPPAPRENKALELFDME
EEEPVMDPAWPHLQIVYELFLRFIQSPETDAKLAKRYIDHGFIVRLLDLFDSEDPREREY
LKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEIFGSIINGFALPLKE
EHKLFLVRSLIPLHKPKCVAMYHQQLSYCVTQFVEKDCKLADIVIRGLLKYWPVTNSSKE
VMFLGELEEVLEATQPAEFQRCMVPLFRQISRCLSSSHFQVAERALFLWNSNHIEGLIKH
NSKVILPVVLPALERNTKGHWNQAVQSLSLNVRKIFMDYDPALFEECREKFEEEEAQEAG
MRSRCEARWKRLEEIASSKEVK

Transcript Sequence

Transcript ID

Zm00001d049642_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:38570347:38574015:1 gene:Zm00001d049642 gene_biotype:protein_coding transcript_biotype:protein_coding description:Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform
Sequence

CGGCCCACTCGCGGCGGAAATTCGTGACAAAGCCGCGATTTTTTTTCTTCTTCTTCTTCG
CCCTTTTGCTTTCGCTCCCGCCGGCCCCCTTTTCCTTTTCTTGTTGACCCCGCCGGTCTG
CCCCTTTTATTGCTGCGCCGGATCGTGTTTTCTCGTCGGAAGGCGCGGGCTTTCCGAGGG
CGGCGATCGCGGATTCGCCCCCGGAGGCGTCGATTTGGTTCGCAGGTGCGGTTTTGCCTC
CCCAATTTTGCTTCTGGGGAAGCGGTGTTCGATTTGTTCAGAACCCGTCATGATTAAGCA
GATCCTCGGCCGGCTTCCTAAAAAGCAGGCCAAGTCCGGCGAGAAGGAGCTGGCCGGCGC
GGGCCCGTCGCTGCCCAGCCCGACGGCCGATACGAGAACCACCACCGATTTGACCACGTC
TAGCAGGCTTGTCAGTCCCAGCAACTACGCCTCCACGGCCACGAATCAAGGCCAGAGCTT
CGTGGCGGCCAGGGCCGCCGGCGTCAGCAACGGGTTCCCGGCCTCGGCAGGGTATGAGGC
GCTGCCGAGCTTCAGGGACGTGCCGGCGCCGGAGAAACCTGGTCTGTTCCTCAGGAAGCT
GGCCATGTGCTGTGTGGTGTTCGACTTCGCGGACCCGACCAAGGACGCGAGGGAGAAGGA
AGTCAAGAGGCAGACGCTGCTTGAGCTGGTGGACTACATCACCTCGGCCACCGGCAAGTT
CCCGGAGCACGTCGTGCCGGAGGTCATCAGGATGGTGTCTGCGAACCTGTTCAGGGTGCC
GCCCCCTGCCCCGAGAGAGAACAAGGCACTCGAGTTGTTCGATATGGAGGAGGAAGAGCC
CGTCATGGACCCGGCGTGGCCGCACCTGCAGATTGTGTATGAGCTGTTCTTGAGGTTTAT
TCAGTCTCCCGAGACAGACGCGAAGCTAGCCAAGAGATACATTGATCACGGCTTCATTGT
CAGGCTTCTCGATCTCTTTGACTCGGAGGATCCTAGGGAGAGGGAGTACTTGAAGACGAT
CCTTCACAGGATATACGGCAAGTTCATGGTGCACCGTCCATTCATCAGGAAGGCGATCAA
TAATATCTTCTACAGGTTTATATTCGAGACAGAGAAGCATAATGGTATCGCAGAGCTGTT
AGAGATTTTCGGGAGTATAATTAATGGCTTTGCTTTGCCACTCAAGGAGGAGCACAAATT
GTTTTTAGTACGATCACTGATTCCACTCCACAAACCAAAATGCGTTGCCATGTACCATCA
GCAACTGTCTTACTGTGTCACCCAGTTTGTTGAGAAAGATTGCAAGCTTGCTGATATTGT
CATTAGGGGTTTACTGAAGTATTGGCCCGTCACTAATAGCTCAAAGGAGGTGATGTTTTT
GGGTGAGCTAGAGGAGGTGCTGGAAGCTACACAGCCAGCAGAGTTCCAGAGGTGTATGGT
GCCACTTTTTCGTCAGATTTCCCGATGTTTAAGCAGTTCTCACTTTCAGGTGGCAGAAAG
AGCGCTCTTCCTATGGAACAGCAATCACATCGAGGGTTTGATCAAACACAACAGCAAGGT
TATACTGCCCGTAGTCCTCCCAGCATTAGAACGGAACACGAAAGGCCATTGGAATCAGGC
AGTGCAGAGCCTGAGTCTAAATGTCCGTAAAATATTCATGGACTACGACCCAGCACTGTT
CGAGGAGTGTCGCGAGAAGTTTGAGGAAGAGGAAGCTCAAGAAGCCGGCATGAGGTCAAG
ATGTGAGGCTAGATGGAAGCGCCTAGAAGAAATTGCCTCGTCAAAGGAGGTGAAGTAGCT
CGTCTTGCCGACTGCCCAGGCTGTAGCTCGTCAGCAGAGTTCCTCTAGCTATCTAGCCTT
GCTGGCTGCATACGAGCAGCTAGCTCTTTCTGGCAGGATCAAGTAGATGCTGATGTAACT
GCCCATGGATGGCTGCTTGCCTCGTGTTACTTGCTTTACCGAACATTTTACAGGCTGACA
TGTAAATACGAGGTACATGGTGGGCCGTGAAGCTTCAACGGGGACTCAGGTTCTGGCTGC
CGTGTGATCCACTGATGACAGTATCGGTTTTCATCATCAGAGGACAAAGGAAAGGATGTA
AAATGGTCATTCTGCGGCTCAATGTCTTGATCCAAGCACTGCTAGAAGCACTTGAAAGAC
AGTCGAGCAGCACTTGTTCTTGCCTGCTGATGGTGATTTTGCTGAAATGTATAGCATGCT
TTGTGTATGATGAATGGTAACTTGGAGCCATGTCTTGTGATGATATGTAATCGTGTTGTA
CATGTCTTTTCCTTCCTTTGATGTATACAGAAATTTGGAATGAAGTGCTCATTGATTGAT
GTTTT