Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d049572_T005
CDS Infomation	cds chromosome:B73_RefGen_v4:4:35626457:35632252:-1 gene:Zm00001d049572 gene_biotype:protein_coding transcript_biotype:protein_coding description:Sphingoid long-chain bases kinase 1
Sequence	ATGGAAGTCATTGAAACAGCATATGCCGGGCATGCAAAGGTTCTTTCTTCTACTGTTGAC CTCAAAAAATTCCCTGATGGTATTATATGTGTTGGTGGCGATGGGATCGTCAATGAGGTT TTGAATGGATTACTTAGTAGAGACGATTTTGACGTGGCAATTCGATTTCCCATTGGGATA ATACCTGCTGGTTCTGATAATTCATTGGTGTGGACTGTTCTTGGCATCAGGGATCCTGTT TCTGCGGCAATCGCTTTAGCTAAGGGGGATTTCACACCAATAGATGTGTTTGCCGTAAAG TGGATCCAAGCTGGAGTGACTCATTTTGGTTTGACAGCTTCCTACTATGGTTTCGTAGCT GATGTTCTGCAACTGTCAGAAAAGTTCCGCGTGCAGCTCGGTCCCTTCCGTTACGTTGTT GCTGGCCTTCTGAAGTTTCTTTCATTACCCCAGTACAGATTTGAGGTGGACTATCTCCCT TCATCGCTGCAGGGGAGAAGTTCTGAATCAAGACCACTGGCTGAAAAACGTCACGAACAG CTTTCTGATGACGGCAAGGTTAGGAGAGGCACACAGACCAACGGTAGGATCAAAGACGAC TGGGTTACCAGGAACGGGGAGTTTCTTGGCATTTTTGTTTGCAATCACTTCTGCAAGCCT GCCCAGGGGTTACTTTCTCCTGTTATCGCACCGAAAGCGCGGCACGACGACGGCAGCCTG GACCTGATTCTCGTCCATGGAAGCGGCAGGCTGAGACTGTTTTGCTTCTTTGTTGCCTAT CAGCTCTGCTGGCATCTTCTACTCCCCTACGTGGAATATGTCAAGATAAAAGAAGTGAAG GTTAGGCCAGTTGGCAGTACCCACAGTGGTTGTGGCGTCGACGGTGAGCTTCTTGATGGA GAGCGCGGTGCTGAATGGCAGTGCTCGCTGCTTCCAGCACAAGGCAGGCTGCTTGGCCAG GATCCCGGTGCTTTCAACTAG

Peptide Sequence

PEP ID	Zm00001d049572_P005
PEP Infomation	pep chromosome:B73_RefGen_v4:4:35626457:35632252:-1 gene:Zm00001d049572 transcript:Zm00001d049572_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:Sphingoid long-chain bases kinase 1
Sequence	MEVIETAYAGHAKVLSSTVDLKKFPDGIICVGGDGIVNEVLNGLLSRDDFDVAIRFPIGI IPAGSDNSLVWTVLGIRDPVSAAIALAKGDFTPIDVFAVKWIQAGVTHFGLTASYYGFVA DVLQLSEKFRVQLGPFRYVVAGLLKFLSLPQYRFEVDYLPSSLQGRSSESRPLAEKRHEQ LSDDGKVRRGTQTNGRIKDDWVTRNGEFLGIFVCNHFCKPAQGLLSPVIAPKARHDDGSL DLILVHGSGRLRLFCFFVAYQLCWHLLLPYVEYVKIKEVKVRPVGSTHSGCGVDGELLDG ERGAEWQCSLLPAQGRLLGQDPGAFN

Transcript Sequence

Transcript ID	Zm00001d049572_T005
Transcript Infomation	cdna chromosome:B73_RefGen_v4:4:35626457:35632252:-1 gene:Zm00001d049572 gene_biotype:protein_coding transcript_biotype:protein_coding description:Sphingoid long-chain bases kinase 1
Sequence	AAGCCGCCTCAGAAAGGACGCTCCTCCCCAACCCCATCCCCGCCCCCGCGGGCTCGGCGG GTTGCGCTGCTGCGGTGCGGTGAGACGCGGGGGCACGGACGGAGGCCGCCACTGGATCTC GTGGAGCTGGCCCGCGCCGAGAGCGATCATGAGCTCTAGAGGCCTTGTCCGCCTCCCGGT TTCCTGTAGTGCTGCTGTTGATGGAGTCAATGGATGCCTCACCTACAGTACATGTCGTTC AAGAAACTACTACTATCAGTATTCTCATACCACTAACTTGCAAATTTCACCAGTAGACCA GATGCCTTTGCCTCGGAAATTAAAGAAATCAATTCAGCGAAACGCTTACTTTTTAACCCA GAAGAGGAAGCTCGTACCACACTGTTCATCAGACCTTAGTACCTCCTGCAGAGGAGTGCC CAACTATTTATCAATCAATGTTTTGCAAGACCAATCAAATACAAAACAGGGAGCTATTCG TAAAGCGCTTGTCATTTTGAATCCTAATTCTGGATTCCGCAGCTCTCGGGATGTTTTCTA CCAGAAAGTGCAATCAACATTGAAGGCTTCAAGATGGAAGTCATTGAAACAGCATATGCC GGGCATGCAAAGGTTCTTTCTTCTACTGTTGACCTCAAAAAATTCCCTGATGGTATTATA TGTGTTGGTGGCGATGGGATCGTCAATGAGGTTTTGAATGGATTACTTAGTAGAGACGAT TTTGACGTGGCAATTCGATTTCCCATTGGGATAATACCTGCTGGTTCTGATAATTCATTG GTGTGGACTGTTCTTGGCATCAGGGATCCTGTTTCTGCGGCAATCGCTTTAGCTAAGGGG GATTTCACACCAATAGATGTGTTTGCCGTAAAGTGGATCCAAGCTGGAGTGACTCATTTT GGTTTGACAGCTTCCTACTATGGTTTCGTAGCTGATGTTCTGCAACTGTCAGAAAAGTTC CGCGTGCAGCTCGGTCCCTTCCGTTACGTTGTTGCTGGCCTTCTGAAGTTTCTTTCATTA CCCCAGTACAGATTTGAGGTGGACTATCTCCCTTCATCGCTGCAGGGGAGAAGTTCTGAA TCAAGACCACTGGCTGAAAAACGTCACGAACAGCTTTCTGATGACGGCAAGGTTAGGAGA GGCACACAGACCAACGGTAGGATCAAAGACGACTGGGTTACCAGGAACGGGGAGTTTCTT GGCATTTTTGTTTGCAATCACTTCTGCAAGCCTGCCCAGGGGTTACTTTCTCCTGTTATC GCACCGAAAGCGCGGCACGACGACGGCAGCCTGGACCTGATTCTCGTCCATGGAAGCGGC AGGCTGAGACTGTTTTGCTTCTTTGTTGCCTATCAGCTCTGCTGGCATCTTCTACTCCCC TACGTGGAATATGTCAAGATAAAAGAAGTGAAGGTTAGGCCAGTTGGCAGTACCCACAGT GGTTGTGGCGTCGACGGTGAGCTTCTTGATGGAGAGCGCGGTGCTGAATGGCAGTGCTCG CTGCTTCCAGCACAAGGCAGGCTGCTTGGCCAGGATCCCGGTGCTTTCAACTAGTTAGGG CTCGTTCGGTTAGCTCTCAATCCATGTAGATTGAGTGAGATTAGATGAGTTTGAATCCCA AACAAGTCAAACTTCTTAATTTTTTCCAATCCCATCTAATCCATGTGTATTGGGAATAAC CGAACAAGGCTTACTGTTTTATCTGTCCAGCAGTACCGAGGTTGTTGGTTAATTTCATGA TAAGAGAGCGAGTTTCAGC