Plant GARDEN
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d049558_T027
CDS Infomation

cds chromosome:B73_RefGen_v4:4:35018271:35023350:-1 gene:Zm00001d049558 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA topoisomerase 1 beta
Sequence

ATGGCTGTTGTCAACCCAACCAACCTTGCTATTGACGACGATGACGACGATACTCCCATT
TCATTCAAGAGGACGAGTAACTCTACGAAGACTGCCAGGCCCACCCCTTCCAAGCATGAG
GGGTCGTCAGGAGGTAATGGTGCACCTGTTAGGATCCCCAAACCTGTGTCTCCCAATCCG
CAGAAGAACGGAGCCACCGGGGCTTCAAGGCCGTTGCATATGAAGCCACCGTCATCCAGT
CCAAACCATCGTCCTTCTGGATCTGGCCAGCCAAACAGTTTGGCACAACATAGTTCAAAG
GCTAATAGCATTGACATGAGTAAACTGAAAAGACCTCTCGTCAAAGATGAGAGATCTGAT
GACTCAGATGACGAGGTGCCGATTGGGTTAAGGAGAAAGGTTGAGGAGAAGAAGTTGAAG
GGAGTTGATACTCGGGTTCAGAAGACAGATGACTCAGATGACGATGATAAGCCATTGGGT
CTCAAGATCAACTCATCCAGAATGTCTTCCAACAGAGTGAATAAGCCTGTTCTGCAGAGA
ACTGTACCAAAGGTTGAGCAGCCTGATGAAGATTCAGATGATGATAAACCATTGGCAAGC
AGGTTGCCCAGTAATGCCGGTCCAAAAAGTGGAGGTGATGTCTCTGAGGATTCAGAGGAT
GAGAAGCCACTGGCTGCCAGATTTTCAAAAGTTGCTGGTAGTGGAAACCCAAAAATAGCT
TCTTCCAGCAAAGGGTTAACCAGTGATACAAATGGCCAACAAAGTTTGGGTAAAAGGCCT
CTAGACAATAGTAATCAAACAAGTTCAGCTCTTAAGAAGGCTAAACCTTCAAACGTTTCA
GCTTCTGCAATCGTTAGAAGAGAAATCAAGACAGATGACAACACACCTCTTGCACAAAGG
CTGAAAATGGGAGAGTCTTCGAAAGGCAAGTCATCTGCAAAGAGTGTCTTTAAGAAGAGT
CCTGCTTCTGTGAAGAAGGACATCAAGAAAATGAAAGGGAAAGGGAAATTAAAGAAGAAC
ATGAAAAATTCTCAGTTCTCAAAGATAATGAAGGTCCCCCCTGGATCTGGTGGAGGAAAG
AAATGGACTACCTTGGAGCACAATGGTGTTATTTTCCCTCCCCCATACAAGCCTCATGGT
GTCAAAATGCTTTACAATGGGAAACCTATCGATCTGACACCAGAACAAGAGGAGGTTGCA
ACAATGTTTGCTGTTATGAAAGACACAGACTATGCGGCCAAGCCAACATTCATTGATAAC
TTTTTCACTGATTGGAGAAAAGTTCTTGGTAAAAATCATATTATTAAGAACTTCGAGCTT
TGTGATTTCACACCAATATATGAATGGCACCTCAGAGAGAAGGAGAGGAAGAAGCAGATG
ACAACAGAGGAGAAAAAAACATTGCGGGAAGACAAATTGAAACAAGAGGAGAAGTACATG
TGGGCTGTTGTAGATGGTGTTAAAGAAAAGGTCGGAAATTTCAGAGTAGAACCGCCTGGC
TTGTTCAGGGGACGTGGAGAACATCCAAAGATGGGGAAACTTAAGCGCCGCATTCTACCA
AGTGATATTACAATAAATATTGGAAAAGGAGCTCCAGTCCCTGAGTGCCCGATACCTGGA
GAAAGTTGGAAAGAAGTCAAACATGACAATACTGTTACATGGTTGGCCTTTTGGAACGAT
CCAATTAACCCAAAGGATTTCAAGTATGTTTTCCTGGCAGCAAGCAGCTCACTGAAGGGG
CAAAGTGACAAAGAGAAGTATGAGAAGTCCAGAAAATTGAAGGGTCATATACAAAGAATT
CGTGAGAATTATACAAAAGATTTCAAAAACAAAGATGTGACGAGGAGGCAAATAGCTGTG
GCAACATACCTTATCGATAAACTAGCCCTTAGGGCTGGCAATGAAAAGCTTAAACAATTT
TAA

Peptide Sequence

PEP ID

Zm00001d049558_P027
PEP Infomation

pep chromosome:B73_RefGen_v4:4:35018271:35023350:-1 gene:Zm00001d049558 transcript:Zm00001d049558_T027 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA topoisomerase 1 beta
Sequence

MAVVNPTNLAIDDDDDDTPISFKRTSNSTKTARPTPSKHEGSSGGNGAPVRIPKPVSPNP
QKNGATGASRPLHMKPPSSSPNHRPSGSGQPNSLAQHSSKANSIDMSKLKRPLVKDERSD
DSDDEVPIGLRRKVEEKKLKGVDTRVQKTDDSDDDDKPLGLKINSSRMSSNRVNKPVLQR
TVPKVEQPDEDSDDDKPLASRLPSNAGPKSGGDVSEDSEDEKPLAARFSKVAGSGNPKIA
SSSKGLTSDTNGQQSLGKRPLDNSNQTSSALKKAKPSNVSASAIVRREIKTDDNTPLAQR
LKMGESSKGKSSAKSVFKKSPASVKKDIKKMKGKGKLKKNMKNSQFSKIMKVPPGSGGGK
KWTTLEHNGVIFPPPYKPHGVKMLYNGKPIDLTPEQEEVATMFAVMKDTDYAAKPTFIDN
FFTDWRKVLGKNHIIKNFELCDFTPIYEWHLREKERKKQMTTEEKKTLREDKLKQEEKYM
WAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRILPSDITINIGKGAPVPECPIPG
ESWKEVKHDNTVTWLAFWNDPINPKDFKYVFLAASSSLKGQSDKEKYEKSRKLKGHIQRI
RENYTKDFKNKDVTRRQIAVATYLIDKLALRAGNEKLKQF

Transcript Sequence

Transcript ID

Zm00001d049558_T027
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:35018271:35023350:-1 gene:Zm00001d049558 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA topoisomerase 1 beta
Sequence

GTTGCAGTTGTCCTTCACCACAGCGGAGTGATGGCTGTTGTCAACCCAACCAACCTTGCT
ATTGACGACGATGACGACGATACTCCCATTTCATTCAAGAGGACGAGTAACTCTACGAAG
ACTGCCAGGCCCACCCCTTCCAAGCATGAGGGGTCGTCAGGAGGTAATGGTGCACCTGTT
AGGATCCCCAAACCTGTGTCTCCCAATCCGCAGAAGAACGGAGCCACCGGGGCTTCAAGG
CCGTTGCATATGAAGCCACCGTCATCCAGTCCAAACCATCGTCCTTCTGGATCTGGCCAG
CCAAACAGTTTGGCACAACATAGTTCAAAGGCTAATAGCATTGACATGAGTAAACTGAAA
AGACCTCTCGTCAAAGATGAGAGATCTGATGACTCAGATGACGAGGTGCCGATTGGGTTA
AGGAGAAAGGTTGAGGAGAAGAAGTTGAAGGGAGTTGATACTCGGGTTCAGAAGACAGAT
GACTCAGATGACGATGATAAGCCATTGGGTCTCAAGATCAACTCATCCAGAATGTCTTCC
AACAGAGTGAATAAGCCTGTTCTGCAGAGAACTGTACCAAAGGTTGAGCAGCCTGATGAA
GATTCAGATGATGATAAACCATTGGCAAGCAGGTTGCCCAGTAATGCCGGTCCAAAAAGT
GGAGGTGATGTCTCTGAGGATTCAGAGGATGAGAAGCCACTGGCTGCCAGATTTTCAAAA
GTTGCTGGTAGTGGAAACCCAAAAATAGCTTCTTCCAGCAAAGGGTTAACCAGTGATACA
AATGGCCAACAAAGTTTGGGTAAAAGGCCTCTAGACAATAGTAATCAAACAAGTTCAGCT
CTTAAGAAGGCTAAACCTTCAAACGTTTCAGCTTCTGCAATCGTTAGAAGAGAAATCAAG
ACAGATGACAACACACCTCTTGCACAAAGGCTGAAAATGGGAGAGTCTTCGAAAGGCAAG
TCATCTGCAAAGAGTGTCTTTAAGAAGAGTCCTGCTTCTGTGAAGAAGGACATCAAGAAA
ATGAAAGGGAAAGGGAAATTAAAGAAGAACATGAAAAATTCTCAGTTCTCAAAGATAATG
AAGGTCCCCCCTGGATCTGGTGGAGGAAAGAAATGGACTACCTTGGAGCACAATGGTGTT
ATTTTCCCTCCCCCATACAAGCCTCATGGTGTCAAAATGCTTTACAATGGGAAACCTATC
GATCTGACACCAGAACAAGAGGAGGTTGCAACAATGTTTGCTGTTATGAAAGACACAGAC
TATGCGGCCAAGCCAACATTCATTGATAACTTTTTCACTGATTGGAGAAAAGTTCTTGGT
AAAAATCATATTATTAAGAACTTCGAGCTTTGTGATTTCACACCAATATATGAATGGCAC
CTCAGAGAGAAGGAGAGGAAGAAGCAGATGACAACAGAGGAGAAAAAAACATTGCGGGAA
GACAAATTGAAACAAGAGGAGAAGTACATGTGGGCTGTTGTAGATGGTGTTAAAGAAAAG
GTCGGAAATTTCAGAGTAGAACCGCCTGGCTTGTTCAGGGGACGTGGAGAACATCCAAAG
ATGGGGAAACTTAAGCGCCGCATTCTACCAAGTGATATTACAATAAATATTGGAAAAGGA
GCTCCAGTCCCTGAGTGCCCGATACCTGGAGAAAGTTGGAAAGAAGTCAAACATGACAAT
ACTGTTACATGGTTGGCCTTTTGGAACGATCCAATTAACCCAAAGGATTTCAAGTATGTT
TTCCTGGCAGCAAGCAGCTCACTGAAGGGGCAAAGTGACAAAGAGAAGTATGAGAAGTCC
AGAAAATTGAAGGGTCATATACAAAGAATTCGTGAGAATTATACAAAAGATTTCAAAAAC
AAAGATGTGACGAGGAGGCAAATAGCTGTGGCAACATACCTTATCGATAAACTAGCCCTT
AGGGCTGGCAATGAAAAGCTTAAACAATTTTAAGGACGACGATGAAGCTGATACTGTTGG
TTGCTGTACGCTGAAGGTTGATAATGTTACATGTATGCCTCCAAATCAGATTCAGTTTGA
CTTTCTGGGTAAAGATTCAATAAGATACTTTAACACCGTAGAGGTTGAAGAGCTTGTGTA
CAAGGCAATTGAGGGTTTCCGTGCTGGAAAGAAGCCAGGACAAGATCTATTTGACAAGAT
TGATACATCTAGGCTAAATGCTCACTTGAAGGATCTAATGCCTGGGCTCACTGCAAAAGT
GTTCCGTACATATAATGCTTCCATAACATTGGACGGAATCTTGCATGAAGAAACAGAAGA
TGGAACTGTTTTAGAAAAAATCGCTGTCTATCAGCGGGCAAACAAAGAGGTTGCCATCAT
CTGTAACCATCAGCGTAGTGTCTCGAAATCACATGAGTCCCAGATGACTAGAATGAACGA
AAAGATTGATGAGTTGAAGTCCCAGATGGAGGAGCTGAAAGCAGACTTGAACAAAGCAAA
GAAAGGGAAGCCTCTAGGCTATGATTCAGAGGGGAAGCCAAAGAGGAACTTGGCTCCTGA
AGCGATTCAAAAGAAGGTTGCAACACTTGAAGGCAAGATAGAGAAGATGGAGATGGATAA
GAGGATAAAAGAGGATCTGAAGACAGTTGCGCTTGGAACGTCAAAGATCAACTATCTTGA
TCCTAGAATAACCGTGGCATGGTGCAAACGCCATGAAGTCCCTATTGAGAAGATTTTCAA
CAAATCTCTCCTCGCGAAATTTGTATGGGCAATGGACGTTGACCCGGAATTCAGATTCTA
GGAGACCATTGGCTACCATGTGCCAGCCAGTTTGGTCCAGTTTCCAGCCCTTCTCCCTGG
ACACTAATTGCAGCTAGGAAAGGAAAGAGCTCGGTGTTTGTTTTTTCAAAGTCCCCACCC
CCCCTGCTCGTGGAACGAAGGAAAGCACCCGTCATTCTCTTTGTAGGCCCTTCTTTTTTT
TTTCTTTTGGTTCAATTGCGCTAAGTTCAATATGTATTCTGCTGAGAAATCTGAGCTCGT
TTGAGAACGGTTG