Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d049543_T016
CDS Infomation	cds chromosome:B73_RefGen_v4:4:34070996:34104390:1 gene:Zm00001d049543 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:circadian clock associated1 description: circadian clock associated1
Sequence	ATGGAGGTGAATTCCTCTGGCGAGGAAACTGTGGTAAAGGTAAGAAAGCCGTACACAATA ACGAAGCAGCGGGAGCGGTGGACAGAGGCTGAACACAAACGGTTCCTTGAAGCCTTGAAA CTTTATGGCAGAGCATGGCAGCGCATAGAAGAGCATGTTGGGACAAAGACAGCCGTGCAG ATCAGAAGTCACGCTCAAAAGTTCTTCACTAAGTTGGAAAAGGAAGCTATGAACAATGGT ACTTCTCCGGGGCAAGCCCATGACATTGACATACCTCCACCACGGCCTAAAAGAAAGCCA AACAGTCCATATCCTCGAAAAAGTTGTCTCAGCTCCGAGACACAAACCAAAGAACTTCCA AATGACAAGTCAACAAAACCAAATATGCCCTTGAGCAATGGGCATGTAAAAATGGTAGGC GATGCATCTCTTCAGAATTTTCAAAGGAAGGAGTTGTCTGAAAAAGGAAGTCGCTCGGAA GTTCTTAATCTCTTCCGTGATGCCCCATCTGCATCATTTTCTTCAGTTAACAAAAGCTCT TCAAATCATGGGGCACCCAGGAGGACCGAGGCAAGTAAAACAGAAAGCCGAGATATGTCC ATCATGGAAAATAATTCTTTTAACCCCAACACCCAAGAGGATGTAAAGGTGATCAGTGAT CAGGAAATGGAAAGGCTTAATGGTATCCAGATCAGATCTAAATGTGAACATTCTCATGAG GGGTATTTGGACATCTCAACGCAACAAATGAAGCTAATGCCAAAGTCTGTGGAGACAACA TATGTGGATGAACAAACTGCAAGAGCTTCACACACCCTAGCAGAGAGCGACGGGACAGCT AGCATTCCAGTGACTGTACCTGAAGGAACTCATCCTGATCAAACAAGTGATCAAGTGGGA ATCAATGGAAGCATGAACCCATGCATCCATCCAATGGTTTCTGCTGACCCAAAATTTGGT AGTAGTGCCACACCACAGACTTTCCCTCATAATTATGCGGCCTTTGCTCCAATGATGCAG TGCAACTGTAACCAAGATACGTACAGGTCATTCACCAACATGTCATCCACCTTCTCCAGC ATGCTTGTTTCCACGTTGTTGTCAAACCCTGCCATCCATGCAGCCGCCAGGCTCGCAGCA TCATACTGGCCAGCAGCTGAAGGTAACACTCCTATTGATCCGAATCAAGAAAACCCTGCA GATGGCGTCCAAGGAAGGAACATAGGCTCTCCTCCAAGCATGGTTTCTATTGTAGCAGCT ACAGTTGCTGCAGCATCTGCATGGTGGGCAACACAAGGTCTTCTCCCTTTCTTCGCTCCA CCCGTGGCTTTTCCATTTGTACCAGCTCCTAGTGCTGCCTTTCCCACAGTTGATGTTCCA CGACCTTCAGAGAAAGACAGAGATTGCCCAGCTGAAAATGCACAGATTGAATGCCAAGAA GCTCGAAAACAGGTACAGTTCGAAGGTTTAAGAATTGCTGCTTCTTCAGAGTCTGATGGG AGTGGAAAAGGCGAGGTGTCTCTCCATACGGAGTTAAAGCTATCTCCTGCCCAGAATGCT GATGCCACACCTACCACAGGAGCTGGCACAAATGATGCATTCAGGAATAAGAAAAAGCAG GATCGCTCTTCATGCGGTTCTAACACACCTTCAAGTAGTGATGTAGATGCGGGCAATGTT CCTGAGGAGGACAATGCTAATGAGAAGGCGAAGCAAGCCTCCTGCAGCAACTCTTCAGCT GGTGACACTAACCACCGCAGATTTAGAAGCAATGGAAGCACAAGTGATTCATGGAAGGAA GTTTCCGAAGAGGGTCGTCTGGCTTTCGATGCGCTGTTCAGTAGGGAAAAGCTTCCGCAA AGCTTTTCTCCCCCACAAGCAGTAGACTCGAAGGAGGTTGCCAAGGAGGAGGAAGATGAA GTGACCACAGTGGCAGTTGACCTCAACAAGAATGCCACAAGCATTGATCATGATGACCTC GACACAATGGATGAGCCCAGGGCTTCCTTTCCCAATGAATTGTCGCACCTGAAGCTGAAA TCGCGCCGTACAGGCTTCAAACCATACAAGAGATGTTCTGTGGAAGCGAAGGAAAACCGG GTGCCGGCTAGCGACATGGTTGGTACCAAGAGGATTCGTCTTGATAGCGAAGCATCCACA TAA

Peptide Sequence

PEP ID	Zm00001d049543_P016
PEP Infomation	pep chromosome:B73_RefGen_v4:4:34070996:34104390:1 gene:Zm00001d049543 transcript:Zm00001d049543_T016 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:circadian clock associated1 description: circadian clock associated1
Sequence	MEVNSSGEETVVKVRKPYTITKQRERWTEAEHKRFLEALKLYGRAWQRIEEHVGTKTAVQ IRSHAQKFFTKLEKEAMNNGTSPGQAHDIDIPPPRPKRKPNSPYPRKSCLSSETQTKELP NDKSTKPNMPLSNGHVKMVGDASLQNFQRKELSEKGSRSEVLNLFRDAPSASFSSVNKSS SNHGAPRRTEASKTESRDMSIMENNSFNPNTQEDVKVISDQEMERLNGIQIRSKCEHSHE GYLDISTQQMKLMPKSVETTYVDEQTARASHTLAESDGTASIPVTVPEGTHPDQTSDQVG INGSMNPCIHPMVSADPKFGSSATPQTFPHNYAAFAPMMQCNCNQDTYRSFTNMSSTFSS MLVSTLLSNPAIHAAARLAASYWPAAEGNTPIDPNQENPADGVQGRNIGSPPSMVSIVAA TVAAASAWWATQGLLPFFAPPVAFPFVPAPSAAFPTVDVPRPSEKDRDCPAENAQIECQE ARKQVQFEGLRIAASSESDGSGKGEVSLHTELKLSPAQNADATPTTGAGTNDAFRNKKKQ DRSSCGSNTPSSSDVDAGNVPEEDNANEKAKQASCSNSSAGDTNHRRFRSNGSTSDSWKE VSEEGRLAFDALFSREKLPQSFSPPQAVDSKEVAKEEEDEVTTVAVDLNKNATSIDHDDL DTMDEPRASFPNELSHLKLKSRRTGFKPYKRCSVEAKENRVPASDMVGTKRIRLDSEAST

Transcript Sequence

Transcript ID	Zm00001d049543_T016
Transcript Infomation	cdna chromosome:B73_RefGen_v4:4:34070996:34104390:1 gene:Zm00001d049543 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:circadian clock associated1 description: circadian clock associated1
Sequence	AGCAAAGCACCTCCGACTCCAAGTCGCGAGAGCCTTCTCATTCGTCTTCCTCCTCTTCCA CCCATCCTGCCTGCTCACTTCCGTTCCGTAGTCCAGCTAGATCCCCGGGCAACCGATCCA CCGAGAAGCTTGTGGTTGTGGCGGCGGCGGAGAGGGAAGCGGGAGGTCGGAGGTAGGCGC GGATGCCACTGTTGTGCCGGCGCCGGCGGGGCCGGTGATGCCCGCTTGAGCTGGGCCACC GTGCGTCGGAGGTGGACGAGGGAGCGAGGCGGCGCCAGACCGAGGTTGCGTCGGGCTCGA TTTCTACTGGGCTGCTGTCTGCTGAGTTTACGGAAGTGTTTGGCCCTAGAAGAGTTGAAG ATAAGGAGTGGAGCTAGGTTTAAACTCTGGTGACTTGGTTGTTGCGTGCAACGAATCAAC TATGCTGAGTTTTTCTGTAGGTAAGTGAAATGTTGTAACAGAAATTGGATCAATTCAAGT AGAGGTCTAGGAGGAGATATGAGGTACTACTTGCGTCAGGTCCAGCGTTTGGTTGGAGAT ATGGAAGGAGGAGCTCTCTTGTTTATAGACGACCTCAACTCCAAGTGACAAAGCGAACAG CTGTTGAACGTTTCCCTTCTATTTCTGTTTCTTTTTGCCGGATTTGGAGATGGAGGTGAA TTCCTCTGGCGAGGAAACTGTGGTAAAGGTAAGAAAGCCGTACACAATAACGAAGCAGCG GGAGCGGTGGACAGAGGCTGAACACAAACGGTTCCTTGAAGCCTTGAAACTTTATGGCAG AGCATGGCAGCGCATAGAAGAGCATGTTGGGACAAAGACAGCCGTGCAGATCAGAAGTCA CGCTCAAAAGTTCTTCACTAAGTTGGAAAAGGAAGCTATGAACAATGGTACTTCTCCGGG GCAAGCCCATGACATTGACATACCTCCACCACGGCCTAAAAGAAAGCCAAACAGTCCATA TCCTCGAAAAAGTTGTCTCAGCTCCGAGACACAAACCAAAGAACTTCCAAATGACAAGTC AACAAAACCAAATATGCCCTTGAGCAATGGGCATGTAAAAATGGTAGGCGATGCATCTCT TCAGAATTTTCAAAGGAAGGAGTTGTCTGAAAAAGGAAGTCGCTCGGAAGTTCTTAATCT CTTCCGTGATGCCCCATCTGCATCATTTTCTTCAGTTAACAAAAGCTCTTCAAATCATGG GGCACCCAGGAGGACCGAGGCAAGTAAAACAGAAAGCCGAGATATGTCCATCATGGAAAA TAATTCTTTTAACCCCAACACCCAAGAGGATGTAAAGGTGATCAGTGATCAGGAAATGGA AAGGCTTAATGGTATCCAGATCAGATCTAAATGTGAACATTCTCATGAGGGGTATTTGGA CATCTCAACGCAACAAATGAAGCTAATGCCAAAGTCTGTGGAGACAACATATGTGGATGA ACAAACTGCAAGAGCTTCACACACCCTAGCAGAGAGCGACGGGACAGCTAGCATTCCAGT GACTGTACCTGAAGGAACTCATCCTGATCAAACAAGTGATCAAGTGGGAATCAATGGAAG CATGAACCCATGCATCCATCCAATGGTTTCTGCTGACCCAAAATTTGGTAGTAGTGCCAC ACCACAGACTTTCCCTCATAATTATGCGGCCTTTGCTCCAATGATGCAGTGCAACTGTAA CCAAGATACGTACAGGTCATTCACCAACATGTCATCCACCTTCTCCAGCATGCTTGTTTC CACGTTGTTGTCAAACCCTGCCATCCATGCAGCCGCCAGGCTCGCAGCATCATACTGGCC AGCAGCTGAAGGTAACACTCCTATTGATCCGAATCAAGAAAACCCTGCAGATGGCGTCCA AGGAAGGAACATAGGCTCTCCTCCAAGCATGGTTTCTATTGTAGCAGCTACAGTTGCTGC AGCATCTGCATGGTGGGCAACACAAGGTCTTCTCCCTTTCTTCGCTCCACCCGTGGCTTT TCCATTTGTACCAGCTCCTAGTGCTGCCTTTCCCACAGTTGATGTTCCACGACCTTCAGA GAAAGACAGAGATTGCCCAGCTGAAAATGCACAGATTGAATGCCAAGAAGCTCGAAAACA GGTACAGTTCGAAGGTTTAAGAATTGCTGCTTCTTCAGAGTCTGATGGGAGTGGAAAAGG CGAGGTGTCTCTCCATACGGAGTTAAAGCTATCTCCTGCCCAGAATGCTGATGCCACACC TACCACAGGAGCTGGCACAAATGATGCATTCAGGAATAAGAAAAAGCAGGATCGCTCTTC ATGCGGTTCTAACACACCTTCAAGTAGTGATGTAGATGCGGGCAATGTTCCTGAGGAGGA CAATGCTAATGAGAAGGCGAAGCAAGCCTCCTGCAGCAACTCTTCAGCTGGTGACACTAA CCACCGCAGATTTAGAAGCAATGGAAGCACAAGTGATTCATGGAAGGAAGTTTCCGAAGA GGGTCGTCTGGCTTTCGATGCGCTGTTCAGTAGGGAAAAGCTTCCGCAAAGCTTTTCTCC CCCACAAGCAGTAGACTCGAAGGAGGTTGCCAAGGAGGAGGAAGATGAAGTGACCACAGT GGCAGTTGACCTCAACAAGAATGCCACAAGCATTGATCATGATGACCTCGACACAATGGA TGAGCCCAGGGCTTCCTTTCCCAATGAATTGTCGCACCTGAAGCTGAAATCGCGCCGTAC AGGCTTCAAACCATACAAGAGATGTTCTGTGGAAGCGAAGGAAAACCGGGTGCCGGCTAG CGACATGGTTGGTACCAAGAGGATTCGTCTTGATAGCGAAGCATCCACATAATTGATTTC TTCAAAGTTATATTTACATCTAAGCTACTATAGGACTTCAGATCTTGCAATGCAGTGCTT CATTAAAACTCAATCTGTTGTGTGCTGTATTTTAATGCTTGTCAAGCAGCCCGCTAGACT GCTTTAAAACCTTATCTCGTAGAGTCTGATTTAAGCATCATGCAACTATCAAACTTTTTT TTTTGGTCAAAATGTATTTTCCTTATGTTTTATATTTTTGGAAAGGAAAATAATTGAAAT ATTATTTATTTT