Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d049539_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:4:33796845:33798491:1 gene:Zm00001d049539 gene_biotype:protein_coding transcript_biotype:protein_coding description:FAD-binding Berberine family protein
Sequence	ATGAGCTGCTCCATCGCAGCTCTCGTGGTTTCCCTCTTCCTTTCACTGAACCAAATCATA TCGTGCCGTGCGGCTGGCGCAGACGACGATGGCGCAGCACGCAGCCTCGCCTCCTGCCTC ATCTCCCACGGCGTCACCAACTTCACGCTCCCGACGTCCCGGAGCTACGCCGGGGTCCTC AACTCCTCCATCAGCAACCTCCGGTTCGCGCTCCCGGACGTCGGCAAGCCGGCCGCCGTG GTGCTCCCGGGCTCCAGGCAGGACCTGCAGCGCTCCGTGCTCTGCGCGCGGAGCAGCTCG CTGGCGGTCCGCGTGCGCAGCGGCGGGCACAGCTACGAGGGCCTCTCGTACACCTCGGAG AACCGGGTGCCGTTCGTGGTGATCGACGTCGCGAACCTGAACCGGGTCCGCGTGGACCGG GGCTCGGCCACGGCCTGGGCCGAGGCCGGCGCGACGCTGGGCGAACTGTACCACGCCGTG GGCCGGTCCGGCCGGTCGCTGGCGTTCTCGGCGGGCTCCTGCTCGACCATCGGCCTGGGC GGCACCGTCTCCGGCGGCGGCTTCGGGCTGCTGTCGCGCAGGTTCGGGCTGGCGGCCGAC AACGTGCTGGACGCGGTGCTCGTCGACGCGGACGGCAGGGCGCTCGACCGGGCCGCGATG GGCCGCGACGTCTTCTGGGCCATCCGCGGCGGCGGCGGCGGGAGCTGGGGCGTAGTGTAC GCCTGGAAGCTCCGGCTCGTCCCGGTCCCTCGCAACGTCACCGTGCTCTCGGTGGGCCGG ACCGGCCCGGTCGAGCTCGTCGCCGGGCTCGTCCACAGGTGGCAGCTCGTGGCGCCCAGC CTGCCCGATGACTTCTACCTCTCCGTGTACCTCCCGACCGGTCCGTCATCGCTGGACGGC AACGTGTCCGTCTCGTTCTCCGGCCAGGTGCTTGGACCGAAGCACCGTGCCCTGTCAGCG CTGCGCCAAAGCTTCCCAGAGCTCGGGCTGGCCGAGTCGGAGCTCGGCGAGGCGAGCTGG CTGGATGCGACCGCCCAGTTCGCCGGCCTCGACACGGCGGCCGACCTTCCGAACCGCCAG CTAGGGTCGAGGCAGTACTTCAAGGGCAAGTCCGACTACGTGCGGTCGCCGATCTCGCGG CGCGCCATGGCGGACATCGTCCGGTACCTTTCCACGGGGCCCCCGCGGCAGGGGCAGGGG CAGGGGGGCGGGTACGTGATCCTGGACCCCTACGGCGGCGCCATGGCCCGGATCGCGAGC GGCGACACGCCGTTCCCGCACCGCGCCGGGACCCTGTACGGCGTGCAGTACCAGGTGTAC TGGGACGAGGACGGCGAGCTCGGTGGCCGCGCCGCCGCCGCCGCCGGGGAGTTCTGTGTG CGGTGGCTCCGGTCGCTCTACGCGTTCATGGCGCCCCACGTGTCCAAGGGCCCCCGTGCC GCGTACGTCAACTACCTGGACCTCGACCTCGGCGCCAACAACTGGACCGCCCCGGCGGGA GGGTCGTCGAAGGCGGCGGTGGCGCGCGCGCGCTCGTCGTGGGGCGCCGCGTACTTCGGC GACAACTTCGACCGCCTGGTCGGGGCAAAGACGGCGGTGGACCCCGGCAATGTGTTCAAC AATGCACAAAGCATTCCCCCTCTGTAG

Peptide Sequence

PEP ID	Zm00001d049539_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:4:33796845:33798491:1 gene:Zm00001d049539 transcript:Zm00001d049539_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:FAD-binding Berberine family protein
Sequence	MSCSIAALVVSLFLSLNQIISCRAAGADDDGAARSLASCLISHGVTNFTLPTSRSYAGVL NSSISNLRFALPDVGKPAAVVLPGSRQDLQRSVLCARSSSLAVRVRSGGHSYEGLSYTSE NRVPFVVIDVANLNRVRVDRGSATAWAEAGATLGELYHAVGRSGRSLAFSAGSCSTIGLG GTVSGGGFGLLSRRFGLAADNVLDAVLVDADGRALDRAAMGRDVFWAIRGGGGGSWGVVY AWKLRLVPVPRNVTVLSVGRTGPVELVAGLVHRWQLVAPSLPDDFYLSVYLPTGPSSLDG NVSVSFSGQVLGPKHRALSALRQSFPELGLAESELGEASWLDATAQFAGLDTAADLPNRQ LGSRQYFKGKSDYVRSPISRRAMADIVRYLSTGPPRQGQGQGGGYVILDPYGGAMARIAS GDTPFPHRAGTLYGVQYQVYWDEDGELGGRAAAAAGEFCVRWLRSLYAFMAPHVSKGPRA AYVNYLDLDLGANNWTAPAGGSSKAAVARARSSWGAAYFGDNFDRLVGAKTAVDPGNVFN NAQSIPPL

Transcript Sequence

Transcript ID	Zm00001d049539_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:4:33796845:33798491:1 gene:Zm00001d049539 gene_biotype:protein_coding transcript_biotype:protein_coding description:FAD-binding Berberine family protein
Sequence	ATGAGCTGCTCCATCGCAGCTCTCGTGGTTTCCCTCTTCCTTTCACTGAACCAAATCATA TCGTGCCGTGCGGCTGGCGCAGACGACGATGGCGCAGCACGCAGCCTCGCCTCCTGCCTC ATCTCCCACGGCGTCACCAACTTCACGCTCCCGACGTCCCGGAGCTACGCCGGGGTCCTC AACTCCTCCATCAGCAACCTCCGGTTCGCGCTCCCGGACGTCGGCAAGCCGGCCGCCGTG GTGCTCCCGGGCTCCAGGCAGGACCTGCAGCGCTCCGTGCTCTGCGCGCGGAGCAGCTCG CTGGCGGTCCGCGTGCGCAGCGGCGGGCACAGCTACGAGGGCCTCTCGTACACCTCGGAG AACCGGGTGCCGTTCGTGGTGATCGACGTCGCGAACCTGAACCGGGTCCGCGTGGACCGG GGCTCGGCCACGGCCTGGGCCGAGGCCGGCGCGACGCTGGGCGAACTGTACCACGCCGTG GGCCGGTCCGGCCGGTCGCTGGCGTTCTCGGCGGGCTCCTGCTCGACCATCGGCCTGGGC GGCACCGTCTCCGGCGGCGGCTTCGGGCTGCTGTCGCGCAGGTTCGGGCTGGCGGCCGAC AACGTGCTGGACGCGGTGCTCGTCGACGCGGACGGCAGGGCGCTCGACCGGGCCGCGATG GGCCGCGACGTCTTCTGGGCCATCCGCGGCGGCGGCGGCGGGAGCTGGGGCGTAGTGTAC GCCTGGAAGCTCCGGCTCGTCCCGGTCCCTCGCAACGTCACCGTGCTCTCGGTGGGCCGG ACCGGCCCGGTCGAGCTCGTCGCCGGGCTCGTCCACAGGTGGCAGCTCGTGGCGCCCAGC CTGCCCGATGACTTCTACCTCTCCGTGTACCTCCCGACCGGTCCGTCATCGCTGGACGGC AACGTGTCCGTCTCGTTCTCCGGCCAGGTGCTTGGACCGAAGCACCGTGCCCTGTCAGCG CTGCGCCAAAGCTTCCCAGAGCTCGGGCTGGCCGAGTCGGAGCTCGGCGAGGCGAGCTGG CTGGATGCGACCGCCCAGTTCGCCGGCCTCGACACGGCGGCCGACCTTCCGAACCGCCAG CTAGGGTCGAGGCAGTACTTCAAGGGCAAGTCCGACTACGTGCGGTCGCCGATCTCGCGG CGCGCCATGGCGGACATCGTCCGGTACCTTTCCACGGGGCCCCCGCGGCAGGGGCAGGGG CAGGGGGGCGGGTACGTGATCCTGGACCCCTACGGCGGCGCCATGGCCCGGATCGCGAGC GGCGACACGCCGTTCCCGCACCGCGCCGGGACCCTGTACGGCGTGCAGTACCAGGTGTAC TGGGACGAGGACGGCGAGCTCGGTGGCCGCGCCGCCGCCGCCGCCGGGGAGTTCTGTGTG CGGTGGCTCCGGTCGCTCTACGCGTTCATGGCGCCCCACGTGTCCAAGGGCCCCCGTGCC GCGTACGTCAACTACCTGGACCTCGACCTCGGCGCCAACAACTGGACCGCCCCGGCGGGA GGGTCGTCGAAGGCGGCGGTGGCGCGCGCGCGCTCGTCGTGGGGCGCCGCGTACTTCGGC GACAACTTCGACCGCCTGGTCGGGGCAAAGACGGCGGTGGACCCCGGCAATGTGTTCAAC AATGCACAAAGCATTCCCCCTCTGTAG