Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d049313_T004
CDS Infomation

cds chromosome:B73_RefGen_v4:4:25972889:26004018:-1 gene:Zm00001d049313 gene_biotype:protein_coding transcript_biotype:protein_coding description:NOL1/NOP2/sun family protein
Sequence

ATGGACTCCCACTCCCCCACCTCGGCGGCACCGCCGGCAGCTGCTGAAACGGCGCGGTAC
ACATACAGCCCGAGGCTGCGGTGGCAGCCGGAAGTGGAGGAGTACTTCAACACGGCGTAC
GGCCGCGACCACTTTGCCCGCATCTCTGAGGCCCTGGCGCATCCTTCTTGTTATTCTTGT
ATCCGTGTCAATACTCTGAAGTCTTCCACTGATGCTGTCATGCATAAACTGCTGGATTTA
GTATGCAAAAATGAGCTCTCTGCTGTAATCAATGGATTGGAGGTTGTTGAACTGAATGGT
GGAGACCAATCACAAGAAGGGTGCTCTCTGGTCCACAAGTGCCCCTATGCGGGCCTTGAA
AATGTTTTGTTTGTTCAGGGATCAGGACCACATGTGCTGCATTATGGTAGCCAACCAGAT
CAAGCTGTTAAGGAAGTAGTTGTAAGTCGAAAATGTGCAGAGTCAGTTCTTCGGGGTGCC
CAGGTGTATGTTCCTGGTGTTTTAGCATGTAGTTCACATGTTGAAAAGGGTGATAAGGTT
GCAGTGTCAGTCGCTATTGAGCAGCCTGTCAAGGAAGATGGCTGGGCTGTGGGCATAACA
CGAGGAACCGTTTTACAAGGATTGCAATCAGATGCACATTATGAAGAAAGGAAGGGTCTG
TACATTGGTCAAGGAACTGCTGCAATGTCAAGATCTGCAATATTTCGTGTTCCTCATGGG
ATTGCAGTAGAGATGACTGAGAGGGTATACAAGCTCCCATCTTTCAATGATGTGCTTGAA
GGGGAAATATTTCTTCAGAATTTACCAAGTGTTGTGACGGCTCGTGTCCTTGATCCCCAG
TCAGGAGAGCGAATACTAGATATGTGCGCTGCTCCTGGAGGAAAAACAACAGCAATTGCT
ATCCTTATGAGGGACGAAGGAGAAGTTGTTGCCCTTGATAGATCTCACAATAAGGTGATG
GATATTCTGAAGTTGGCTTCTGAGATGGACTTGAGTTGTATTAAAGCTTATAAACTTGAT
GCTCTCAAATCTGTACGGAAAACTGATGAAGCAAGAAGCCTTGGCATGGCTGATAATCAC
AGTGAAGCAATTGAAACACCAACAGAGGACCCTTGCCATGCCACAGTAGGTGGGAGATCT
ACCAGTGTAGACGAAGACAGCTCAACAACAACAGTGGTGTTTTCTGATAACAAAAACCTA
AATTCCAAAAGATACATTAGCAAGGCAGAACTCAGGAAGAATTTAAGGCAGATGAAGAAT
GGACCTGGAAGAAATAATTGCTCTGGTGGTAGAGTTGAAAAGTCAAAAGGATTTTGTCCT
AACAGCTTTGATCGTGTCCTCCTTGATGCTCCATGTTCTGCGCTTGGCTTGAGACCTCGG
CTCTTTGCTGGTGAGGAAACTCTAGAATCGCTGAAAAAACATTCGAAGTATCAGAGGAAA
ATGTTTGATCAAGCTGTCAAGCTAGTTCGTCCTGGTGGGGTGATTGTTTATTCAACGTGT
ACTATAAATCCAGGGGAGAATGAGGCTTTGGTGAGATATGCATTGGATACCTACAAATTT
CTTTCACTAGTATCACAGTACCCGAAAGTTGGAGGGCCTGGTATTGTTGGTTCGTGCGAG
CTGTTCAACAAGACATATACTGAGGAATGGTTGAGAGAGGATGAAGCTGACCTTGTTCAG
AGGTTTGATCCGTCATCATCAGTGGATACCATTGGTTTCTTCATCGCGAAATTTGATGTT
GGAGAGAAAGATGAATAA

Peptide Sequence

PEP ID

Zm00001d049313_P004
PEP Infomation

pep chromosome:B73_RefGen_v4:4:25972889:26004018:-1 gene:Zm00001d049313 transcript:Zm00001d049313_T004 gene_biotype:protein_coding transcript_biotype:protein_coding description:NOL1/NOP2/sun family protein
Sequence

MDSHSPTSAAPPAAAETARYTYSPRLRWQPEVEEYFNTAYGRDHFARISEALAHPSCYSC
IRVNTLKSSTDAVMHKLLDLVCKNELSAVINGLEVVELNGGDQSQEGCSLVHKCPYAGLE
NVLFVQGSGPHVLHYGSQPDQAVKEVVVSRKCAESVLRGAQVYVPGVLACSSHVEKGDKV
AVSVAIEQPVKEDGWAVGITRGTVLQGLQSDAHYEERKGLYIGQGTAAMSRSAIFRVPHG
IAVEMTERVYKLPSFNDVLEGEIFLQNLPSVVTARVLDPQSGERILDMCAAPGGKTTAIA
ILMRDEGEVVALDRSHNKVMDILKLASEMDLSCIKAYKLDALKSVRKTDEARSLGMADNH
SEAIETPTEDPCHATVGGRSTSVDEDSSTTTVVFSDNKNLNSKRYISKAELRKNLRQMKN
GPGRNNCSGGRVEKSKGFCPNSFDRVLLDAPCSALGLRPRLFAGEETLESLKKHSKYQRK
MFDQAVKLVRPGGVIVYSTCTINPGENEALVRYALDTYKFLSLVSQYPKVGGPGIVGSCE
LFNKTYTEEWLREDEADLVQRFDPSSSVDTIGFFIAKFDVGEKDE

Transcript Sequence

Transcript ID

Zm00001d049313_T004
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:25972889:26004018:-1 gene:Zm00001d049313 gene_biotype:protein_coding transcript_biotype:protein_coding description:NOL1/NOP2/sun family protein
Sequence

ACATAACCCATAGTTTGCTTGCTCCACTCGGCTCTTGCCGCCGCCTCTGTTCTCGATTCT
CCCGCCTCGTGCTCGCCGTTCCGCGCTTCTTCCCTACCCAGTCCTACATCACCTCCCCGT
CCGCCTTTGGCCCGCAACCGGCGGCCCTCGCCGCTGATGGACTCCCACTCCCCCACCTCG
GCGGCACCGCCGGCAGCTGCTGAAACGGCGCGGTACACATACAGCCCGAGGCTGCGGTGG
CAGCCGGAAGTGGAGGAGTACTTCAACACGGCGTACGGCCGCGACCACTTTGCCCGCATC
TCTGAGGCCCTGGCGCATCCTTCTTGTTATTCTTGTATCCGTGTCAATACTCTGAAGTCT
TCCACTGATGCTGTCATGCATAAACTGCTGGATTTAGTATGCAAAAATGAGCTCTCTGCT
GTAATCAATGGATTGGAGGTTGTTGAACTGAATGGTGGAGACCAATCACAAGAAGGGTGC
TCTCTGGTCCACAAGTGCCCCTATGCGGGCCTTGAAAATGTTTTGTTTGTTCAGGGATCA
GGACCACATGTGCTGCATTATGGTAGCCAACCAGATCAAGCTGTTAAGGAAGTAGTTGTA
AGTCGAAAATGTGCAGAGTCAGTTCTTCGGGGTGCCCAGGTGTATGTTCCTGGTGTTTTA
GCATGTAGTTCACATGTTGAAAAGGGTGATAAGGTTGCAGTGTCAGTCGCTATTGAGCAG
CCTGTCAAGGAAGATGGCTGGGCTGTGGGCATAACACGAGGAACCGTTTTACAAGGATTG
CAATCAGATGCACATTATGAAGAAAGGAAGGGTCTGTACATTGGTCAAGGAACTGCTGCA
ATGTCAAGATCTGCAATATTTCGTGTTCCTCATGGGATTGCAGTAGAGATGACTGAGAGG
GTATACAAGCTCCCATCTTTCAATGATGTGCTTGAAGGGGAAATATTTCTTCAGAATTTA
CCAAGTGTTGTGACGGCTCGTGTCCTTGATCCCCAGTCAGGAGAGCGAATACTAGATATG
TGCGCTGCTCCTGGAGGAAAAACAACAGCAATTGCTATCCTTATGAGGGACGAAGGAGAA
GTTGTTGCCCTTGATAGATCTCACAATAAGGTGATGGATATTCTGAAGTTGGCTTCTGAG
ATGGACTTGAGTTGTATTAAAGCTTATAAACTTGATGCTCTCAAATCTGTACGGAAAACT
GATGAAGCAAGAAGCCTTGGCATGGCTGATAATCACAGTGAAGCAATTGAAACACCAACA
GAGGACCCTTGCCATGCCACAGTAGGTGGGAGATCTACCAGTGTAGACGAAGACAGCTCA
ACAACAACAGTGGTGTTTTCTGATAACAAAAACCTAAATTCCAAAAGATACATTAGCAAG
GCAGAACTCAGGAAGAATTTAAGGCAGATGAAGAATGGACCTGGAAGAAATAATTGCTCT
GGTGGTAGAGTTGAAAAGTCAAAAGGATTTTGTCCTAACAGCTTTGATCGTGTCCTCCTT
GATGCTCCATGTTCTGCGCTTGGCTTGAGACCTCGGCTCTTTGCTGGTGAGGAAACTCTA
GAATCGCTGAAAAAACATTCGAAGTATCAGAGGAAAATGTTTGATCAAGCTGTCAAGCTA
GTTCGTCCTGGTGGGGTGATTGTTTATTCAACGTGTACTATAAATCCAGGGGAGAATGAG
GCTTTGGTGAGATATGCATTGGATACCTACAAATTTCTTTCACTAGTATCACAGTACCCG
AAAGTTGGAGGGCCTGGTATTGTTGGTTCGTGCGAGCTGTTCAACAAGACATATACTGAG
GAATGGTTGAGAGAGGATGAAGCTGACCTTGTTCAGAGGTTTGATCCGTCATCATCAGTG
GATACCATTGGTTTCTTCATCGCGAAATTTGATGTTGGAGAGAAAGATGAATAAACAAAC
GTGACTGAAATTCCAATGTTTGGCATTCACAACTTACGCTAGGGATATCAGCATTGAATT
TTCTGCAATCAGATGGCTCACGTATACCCATGGAGTGGAATGCAGCGTGCCCCCTGAAAT
TTTGTTTGCCAGTGTTTGATATTTTCTTTTGTTCGAAGAACATTGTTCATTATGGTGAAA
TGATGGGGCAAATTAGATTCAAGCTCCTGTAGTCCCGTTTCCAAGAAAAAAGTTACCGGG
TACCCGTATCCGTCCGGGTGTACCGGGTATTTTCTGG