Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Zea mays ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d049251_T039
CDS Infomation	cds chromosome:B73_RefGen_v4:4:22922384:22930491:-1 gene:Zm00001d049251 gene_biotype:protein_coding transcript_biotype:protein_coding description:Rhamnogalacturonate lyase family protein
Sequence	ATGCCGCCGGCACCCATGAGATGGCGGCGCGGGGGCCGCTCGTCATCGCGTCTCCTTCAG CGAGCCCTCCTCTTGGCCGCCTTCTCCGCTGCGGCCCTCATCCTCCTCGTACTCCAGCAC CACCACGGTCCTAAACGCCCAAACCCTTCCGCCGCGTCCCACGCCCGCGACTCCTCAGAC GAGCTCCTCGACGACTCGCCTCCCGCGGAGCGGGATCCGGATGCCAGTGACCCTGCGGTA GTTGTTGACAGGGCCACGTGCGCAACGGTGGAGATGATGGGGGAGGAGGCCGCTGGTGCT GGGCGGGGCTCTCCGGAGCAGGCCAGCCTGCGGGTCCGCGAGATGATCCGGCGCCACTTC GAGCTCCACGGAGCAGAAAGAGTGAGAATGCTTCCTGCCCATGAATTCTGCAAACAAGGA TTTGTGTTGGGGAAAGCATCTGAAGCTGGATTTGGCAATGAAATGTACAAGATCTTAACA GCGGGAGCCTTGAGTGTCATGTTAAACCGATCTTTGATCATCGGGCAAACAAGGGGACTG TATCCTTTTGGGGAGTACATTTCTTATACCAACCAGTCATTCACTATTCATGAAATCAAA CATTTGTGGAGGAAGCATCGCTGTGCTAGGACATATGGTAGAGATCTGAATATCAGAGTG GATATTTTTGAAAATCCAACTGAGACGAATGTTCTGTGTAGTGACTGGAATAGCTGGAAG GATTCAATTATCTGGTTTGATGGCGCAACAGATGCAGTTGGGATTCAGTTCTTTCTGAAG AATGTTCATCCTAGAATGAAGGCTGCCGCGTCGGCTCTTTTTGGATTGCCAGACTCATTG TACGCCAGGCCTAATACATTTGGTGAACTTATGCGAGCTATTATATCTCCATCCAGCAAA GTCCAAGAAGCAGTTGACTGGGCTTTGAAGGGTGTGAATCCAGATATTGTTTTGCACATG CGCATGATGGCGAATAGGCCAGTCCGAGCAAGAAAAGCTGCAGTTCTTTGTATCAAGAAA GCCCTACAGTTTAGCCATATTAAGGGTACAGCTCTGGTGGCCTTGGTCTCAGACACACCA GCATTTGTGAAGGAGATAAAGTCAGACATCAGTGAGTTTGCAGAGGTACTTAATTTTGAT TACAAATTGTTTGCCAAGACTTCTAGTCTGGAGATTGTTGGAAATGATAAGCCCTTGGAT TTTCGATCAAGAGACTGGGGATCAGCTCCAAGGTGGGTGGCGTTTGTTGATTTCTTTATA GCTGCACAGGCCAGGTACGCAGTCGTCACTGGAGCACATCGTCGTGTGGGGACCACCTAC GCACAACTCATTACAGCATTGGCTGCGGCAAACAGGCATGGTCGAGAGCCTTCAGGCACC AACTTCACGTTCCTAAGTAGTGTCCACAGCAACTTGCTGGTGGAGGGGCTGTCGACGCAG GTTGGTTGGGGCCATATCTGGAACAGATATGCTGGTCCTCTAAGCTGTCGGCGCCAGCCA CACCAATGCGCCTTGACCCCGCTCCTCCCTCCTGCTTGGTGGGACGGTCGATGGCAAAGC CCTATTCCCAGGGATGTGAGGAGGCTACTGGAGTACGGTGTCCGGTTATCAGATACTGGG GAGGTGGACGAGAGGCACCTGTTGTCGTACTGCAGGTCAAGGAAAGATCATGTGAAGAGG TTCCATGTCCTTCCACCATACAAGAACCCGGCACGACTGTAG

Peptide Sequence

PEP ID	Zm00001d049251_P039
PEP Infomation	pep chromosome:B73_RefGen_v4:4:22922384:22930491:-1 gene:Zm00001d049251 transcript:Zm00001d049251_T039 gene_biotype:protein_coding transcript_biotype:protein_coding description:Rhamnogalacturonate lyase family protein
Sequence	MPPAPMRWRRGGRSSSRLLQRALLLAAFSAAALILLVLQHHHGPKRPNPSAASHARDSSD ELLDDSPPAERDPDASDPAVVVDRATCATVEMMGEEAAGAGRGSPEQASLRVREMIRRHF ELHGAERVRMLPAHEFCKQGFVLGKASEAGFGNEMYKILTAGALSVMLNRSLIIGQTRGL YPFGEYISYTNQSFTIHEIKHLWRKHRCARTYGRDLNIRVDIFENPTETNVLCSDWNSWK DSIIWFDGATDAVGIQFFLKNVHPRMKAAASALFGLPDSLYARPNTFGELMRAIISPSSK VQEAVDWALKGVNPDIVLHMRMMANRPVRARKAAVLCIKKALQFSHIKGTALVALVSDTP AFVKEIKSDISEFAEVLNFDYKLFAKTSSLEIVGNDKPLDFRSRDWGSAPRWVAFVDFFI AAQARYAVVTGAHRRVGTTYAQLITALAAANRHGREPSGTNFTFLSSVHSNLLVEGLSTQ VGWGHIWNRYAGPLSCRRQPHQCALTPLLPPAWWDGRWQSPIPRDVRRLLEYGVRLSDTG EVDERHLLSYCRSRKDHVKRFHVLPPYKNPARL

Transcript Sequence

Transcript ID	Zm00001d049251_T039
Transcript Infomation	cdna chromosome:B73_RefGen_v4:4:22922384:22930491:-1 gene:Zm00001d049251 gene_biotype:protein_coding transcript_biotype:protein_coding description:Rhamnogalacturonate lyase family protein
Sequence	ACCGGTGCTCGTTCCAGCCCAGGAGGCCAGTACCGCAGTCCCGCGCAGCCGGCCATTCCC ATGCCGCCGGCACCCATGAGATGGCGGCGCGGGGGCCGCTCGTCATCGCGTCTCCTTCAG CGAGCCCTCCTCTTGGCCGCCTTCTCCGCTGCGGCCCTCATCCTCCTCGTACTCCAGCAC CACCACGGTCCTAAACGCCCAAACCCTTCCGCCGCGTCCCACGCCCGCGACTCCTCAGAC GAGCTCCTCGACGACTCGCCTCCCGCGGAGCGGGATCCGGATGCCAGTGACCCTGCGGTA GTTGTTGACAGGGCCACGTGCGCAACGGTGGAGATGATGGGGGAGGAGGCCGCTGGTGCT GGGCGGGGCTCTCCGGAGCAGGCCAGCCTGCGGGTCCGCGAGATGATCCGGCGCCACTTC GAGCTCCACGGAGCAGAAAGAGTGAGAATGCTTCCTGCCCATGAATTCTGCAAACAAGGA TTTGTGTTGGGGAAAGCATCTGAAGCTGGATTTGGCAATGAAATGTACAAGATCTTAACA GCGGGAGCCTTGAGTGTCATGTTAAACCGATCTTTGATCATCGGGCAAACAAGGGGACTG TATCCTTTTGGGGAGTACATTTCTTATACCAACCAGTCATTCACTATTCATGAAATCAAA CATTTGTGGAGGAAGCATCGCTGTGCTAGGACATATGGTAGAGATCTGAATATCAGAGTG GATATTTTTGAAAATCCAACTGAGACGAATGTTCTGTGTAGTGACTGGAATAGCTGGAAG GATTCAATTATCTGGTTTGATGGCGCAACAGATGCAGTTGGGATTCAGTTCTTTCTGAAG AATGTTCATCCTAGAATGAAGGCTGCCGCGTCGGCTCTTTTTGGATTGCCAGACTCATTG TACGCCAGGCCTAATACATTTGGTGAACTTATGCGAGCTATTATATCTCCATCCAGCAAA GTCCAAGAAGCAGTTGACTGGGCTTTGAAGGGTGTGAATCCAGATATTGTTTTGCACATG CGCATGATGGCGAATAGGCCAGTCCGAGCAAGAAAAGCTGCAGTTCTTTGTATCAAGAAA GCCCTACAGTTTAGCCATATTAAGGGTACAGCTCTGGTGGCCTTGGTCTCAGACACACCA GCATTTGTGAAGGAGATAAAGTCAGACATCAGTGAGTTTGCAGAGGTACTTAATTTTGAT TACAAATTGTTTGCCAAGACTTCTAGTCTGGAGATTGTTGGAAATGATAAGCCCTTGGAT TTTCGATCAAGAGACTGGGGATCAGCTCCAAGGTGGGTGGCGTTTGTTGATTTCTTTATA GCTGCACAGGCCAGGTACGCAGTCGTCACTGGAGCACATCGTCGTGTGGGGACCACCTAC GCACAACTCATTACAGCATTGGCTGCGGCAAACAGGCATGGTCGAGAGCCTTCAGGCACC AACTTCACGTTCCTAAGTAGTGTCCACAGCAACTTGCTGGTGGAGGGGCTGTCGACGCAG GTTGGTTGGGGCCATATCTGGAACAGATATGCTGGTCCTCTAAGCTGTCGGCGCCAGCCA CACCAATGCGCCTTGACCCCGCTCCTCCCTCCTGCTTGGTGGGACGGTCGATGGCAAAGC CCTATTCCCAGGGATGTGAGGAGGCTACTGGAGTACGGTGTCCGGTTATCAGATACTGGG GAGGTGGACGAGAGGCACCTGTTGTCGTACTGCAGGTCAAGGAAAGATCATGTGAAGAGG TTCCATGTCCTTCCACCATACAAGAACCCGGCACGACTGTAGGCTGAGGAGGTCGGCGAG GAGCAGTAGAGAGCTCAATTTTGCATTAACCACTTATGACGAGTGTAGGTTTGAGTGGCC AAGCTTTTAAACTGGCCATGCTGGTAAATTTCGTGTCGTGACTGGTGTAGGTTTTGGTAA TCTGGTGACTGGTGCACTGGTGTTCAGGCGGTAGTATATCATGCATCGTACATCACTATT GTTCATCTGTGATAAGATTGGAAAGCAGGTAGCAGACCTGGAGATGATAGCATGATGTAT ATAGGGTAAAGGCATAGCATTGCATTGTCGATGAGTTATAAGCTGGTGGTCTATCTGTCA ATTAACTATATAGCAGAGCACCGACCCAGAATTGTAAGCCTTTCGTCTACTGATGCAATT TTGATGTTTATCGTTCTCCTGTATCTTCGATTTGACAATTATGCGATTGCTTGGAAGGAC TGAGTTCTATGAAATTGCTTCTTTTC