Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d049169_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:4:18913325:18914911:-1 gene:Zm00001d049169 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative FAD-binding Berberine family protein
Sequence	ATGGCTGCATCCGGAAGGAAAGCTGTAGTAGTTCTCATCCTGTGCATGTTGTGTTGCAAT ACCTCGCTGCTACCTTGCTCAGCTTCCTCCGATTCCTTCCTGCAATGCCTGTCGGCGATG ATGCCGAGCGAGCTGGTGTACCAGCAGAGCTCGAGCAGCTTCACTTCCGTGCTGCAGTCC TCCGTGCAGAACCCCAAGTTCGTGACCAACACCACGGTGAGGCCGTTGTGCATCATCACG GCGTCCGACGTCTCCCACGTCCAGACCGCCGTGCGCTGCGGCCGCTGGAACGGTGTGCGC CTCCGCGTGCGCAGCGGTGGGCACGACTACGAGGGCCTCTCCTACCGCTCCGTCCAGCCC GAGGTGTTCGCGGTGCTGGACCTAGCCAGGCTCCGCGGCGTGCAGGTGCGCCCCGGGGAC GACAGCGCGTGGGTGGACGCCGGCACAACGCTGGGCGAGCTGTACTACGCCGTGGGCACG ACCAACCCGGGGTTCCTGTTCCCGGGCGGCGCGTGCGCGACGGTCGGCGTCAGCGGCTTC ATCAGCGGCGGCGGCATCGGTCTCATGATGCGCAAGTACGGCGTCGGGGGCGACAACGTC GTCGACGCCAGGATCGTCAACGCCAACGGCGACGTCCTCGACAGGTTCGCCATGGGGGAT GACCTCTTCTGGGCCATCCGGGGCGGCGGCGGCGAGACCTTCGGCGTCGTGGTGGCGTGG CGGCTGAAGCTGTCTAAGGTCCCGCCGACGGTGACGGTGGTCAACGTCCTCAGGACCATG GAGCAGGGCGCCGCCGACCTCGTCGCCAAGTGGGAGACGACCATCCTCCAGCCGCCAGTC CTCCCGGACCTCACCATCCGGGTCGTCCTGCAGTACAGGCAGGCCTTCTTCCAGACGCTC TTCCTCGGCGGGTGCTCGGACCTCCTCAACACGATGCGCGGCCTCTTCCCGGAGCTCGGC ACCACGGCGGCCGACTGCCACGAGATGAGCTGGCTGCGCGCGATGGCGTTCATCTACTTC GGCAACACCGACACGCCGGTGGAGGCGCTCCTGAACCGAACCAACAACGTGGGCAACTAC TACTTCAAGAGCAAGTCGGATTACGTGCGCCGCGCCGTCGGCAAGGCCGGGTGGGACAGC CTGTACCAGCAGTGGCTCTCCCAGAACGGCAACGGGCAGATCATCCTGGAGCCGCACGGC GCGGCGGTCGGCGGCGCCAACACGATGACCACCTCGCCGTACCCGCACCGCAGGGGCGTG CTGTTCAACATCCAGTACGGCTCCAACTGGTGCTGCGGTGCCAACGGCACGGAGGCGGCG GCGGCGCTTGGGTGGCTCAACGGCCTCTACGGCTTCATGGCGCAGTTCGTCACCAGCAAT CCCAGGGAGGCGTTCGCCAACTACCGCGACCTGGATATGGGCCAGAACGTCATCGGCAGC GACGGCTTGTCATCGTACTGGAGCGCCAGGGCGTGGGCGGAGAGATACTTCATGGGGAAC TACCGGCGGCTGGCGGCAGTGAAGGCGGCAGTGGATCCCACTGACTACTTCAGGAACGAG CAGAGCATACCGCCACTTCCCAAGTAG

Peptide Sequence

PEP ID	Zm00001d049169_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:4:18913325:18914911:-1 gene:Zm00001d049169 transcript:Zm00001d049169_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative FAD-binding Berberine family protein
Sequence	MAASGRKAVVVLILCMLCCNTSLLPCSASSDSFLQCLSAMMPSELVYQQSSSSFTSVLQS SVQNPKFVTNTTVRPLCIITASDVSHVQTAVRCGRWNGVRLRVRSGGHDYEGLSYRSVQP EVFAVLDLARLRGVQVRPGDDSAWVDAGTTLGELYYAVGTTNPGFLFPGGACATVGVSGF ISGGGIGLMMRKYGVGGDNVVDARIVNANGDVLDRFAMGDDLFWAIRGGGGETFGVVVAW RLKLSKVPPTVTVVNVLRTMEQGAADLVAKWETTILQPPVLPDLTIRVVLQYRQAFFQTL FLGGCSDLLNTMRGLFPELGTTAADCHEMSWLRAMAFIYFGNTDTPVEALLNRTNNVGNY YFKSKSDYVRRAVGKAGWDSLYQQWLSQNGNGQIILEPHGAAVGGANTMTTSPYPHRRGV LFNIQYGSNWCCGANGTEAAAALGWLNGLYGFMAQFVTSNPREAFANYRDLDMGQNVIGS DGLSSYWSARAWAERYFMGNYRRLAAVKAAVDPTDYFRNEQSIPPLPK

Transcript Sequence

Transcript ID	Zm00001d049169_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:4:18913325:18914911:-1 gene:Zm00001d049169 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative FAD-binding Berberine family protein
Sequence	ATGGCTGCATCCGGAAGGAAAGCTGTAGTAGTTCTCATCCTGTGCATGTTGTGTTGCAAT ACCTCGCTGCTACCTTGCTCAGCTTCCTCCGATTCCTTCCTGCAATGCCTGTCGGCGATG ATGCCGAGCGAGCTGGTGTACCAGCAGAGCTCGAGCAGCTTCACTTCCGTGCTGCAGTCC TCCGTGCAGAACCCCAAGTTCGTGACCAACACCACGGTGAGGCCGTTGTGCATCATCACG GCGTCCGACGTCTCCCACGTCCAGACCGCCGTGCGCTGCGGCCGCTGGAACGGTGTGCGC CTCCGCGTGCGCAGCGGTGGGCACGACTACGAGGGCCTCTCCTACCGCTCCGTCCAGCCC GAGGTGTTCGCGGTGCTGGACCTAGCCAGGCTCCGCGGCGTGCAGGTGCGCCCCGGGGAC GACAGCGCGTGGGTGGACGCCGGCACAACGCTGGGCGAGCTGTACTACGCCGTGGGCACG ACCAACCCGGGGTTCCTGTTCCCGGGCGGCGCGTGCGCGACGGTCGGCGTCAGCGGCTTC ATCAGCGGCGGCGGCATCGGTCTCATGATGCGCAAGTACGGCGTCGGGGGCGACAACGTC GTCGACGCCAGGATCGTCAACGCCAACGGCGACGTCCTCGACAGGTTCGCCATGGGGGAT GACCTCTTCTGGGCCATCCGGGGCGGCGGCGGCGAGACCTTCGGCGTCGTGGTGGCGTGG CGGCTGAAGCTGTCTAAGGTCCCGCCGACGGTGACGGTGGTCAACGTCCTCAGGACCATG GAGCAGGGCGCCGCCGACCTCGTCGCCAAGTGGGAGACGACCATCCTCCAGCCGCCAGTC CTCCCGGACCTCACCATCCGGGTCGTCCTGCAGTACAGGCAGGCCTTCTTCCAGACGCTC TTCCTCGGCGGGTGCTCGGACCTCCTCAACACGATGCGCGGCCTCTTCCCGGAGCTCGGC ACCACGGCGGCCGACTGCCACGAGATGAGCTGGCTGCGCGCGATGGCGTTCATCTACTTC GGCAACACCGACACGCCGGTGGAGGCGCTCCTGAACCGAACCAACAACGTGGGCAACTAC TACTTCAAGAGCAAGTCGGATTACGTGCGCCGCGCCGTCGGCAAGGCCGGGTGGGACAGC CTGTACCAGCAGTGGCTCTCCCAGAACGGCAACGGGCAGATCATCCTGGAGCCGCACGGC GCGGCGGTCGGCGGCGCCAACACGATGACCACCTCGCCGTACCCGCACCGCAGGGGCGTG CTGTTCAACATCCAGTACGGCTCCAACTGGTGCTGCGGTGCCAACGGCACGGAGGCGGCG GCGGCGCTTGGGTGGCTCAACGGCCTCTACGGCTTCATGGCGCAGTTCGTCACCAGCAAT CCCAGGGAGGCGTTCGCCAACTACCGCGACCTGGATATGGGCCAGAACGTCATCGGCAGC GACGGCTTGTCATCGTACTGGAGCGCCAGGGCGTGGGCGGAGAGATACTTCATGGGGAAC TACCGGCGGCTGGCGGCAGTGAAGGCGGCAGTGGATCCCACTGACTACTTCAGGAACGAG CAGAGCATACCGCCACTTCCCAAGTAG