Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Zea mays ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d049160_T003
CDS Infomation	cds chromosome:B73_RefGen_v4:4:18466294:18470669:1 gene:Zm00001d049160 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:sigma factor sig2A description: sigma factor sig2A
Sequence	ATGGCGTGCCTGGCGCCGCAGTTCAAGTGGGCGCCGTCGGCCGCCGCCCACATGCCTTCC TCGTCCTCGTCCTCGTCCTACTCCAGGTGCTCCGCGCTCCGCGTCCACTGCGCCGTCACC TCCGCCGCTGTCGTCGAGGACCGCACCAACGGCAGCGCGGCGCAGCTGAGGCTCGCTTAC GCGGCTCCGGCGATTCAGAGAAACTTTGAGGCAACTCTGGCATCAGAAGCACTTCTAAAT GAAGAGGCGGTAGTAGCAGCGGCAGCCGCAGAGGCTGTTGCTCTTGCCAGAGCAGCTGCC GAAGCTGCCCAAGAAGTTGTTCAGATAGTACAAAGAAACAACCATCAGCCGGTAATTAGA CCAAAAAAGTGTGTGGACAACTACTTGGCAAATGAAATCCTTCGCACAGAGATGCGATCG AGCAGTCCTGACATGTATGCTAATAATCCTTTGATGGAGTATCTGGACTCTTATGGTATC ATGGATGCTGAAGATGAATTAGATGCTTATGCACAGTATACTGAGAACATAGCTGTGAAA TCTGCTCGTCAATCTGAGAGAAAAGCTAGGAGAACTAGAGCAGCAATAAAAGCTAGCACA ACCCTCCATGCTTCACAAAAGGTTGCATTATCCTCAAAGAAGAAGCGGTCCAAGGGTTCC TCGTCTAGTATGAATCCTTTAGGTTCGTTGTGGAAGATGACCGGTAGGAGACTTCTTACA GCCAAGGAAGAGGTTGAATTCTCAGAAGGTATTCAGGATCTTTTGAAGCTTGAGGCGATC CAAGCTGAGCTTATAGAGTACAATGGCGGTCAGCCAACCTTCTCGCAGTGGGCAACAGCA GCTGGAGTTGATGAGAAAACTTTGCGCAAGCGCTTGAATTATGGTATTTATTGCAAGAAC AGAATGGTAACATCTAATGTGAGACTTGTAATCTCTATTGCCAGAGAGTTTGAAGGCCCT GGAATGGACTTTTATGATCTTATTCAGGAAGGAATGCAGGGCCTTATAAGGGGAGCTGAA AAATTTGATTCATCAAAAGGTTTTAGGTTCTCTACGTATTCTCACTGGTGGATCAAACAA GCAATGCGTAAATCTGTCTCAGAGCAATCCCAAATATTTCGCTTGCCTGTATGCCCACCA CCCAAATCCTGTTCTTTTCCCGATATCAATGTTTTGATGCACTATTGCACTCTTTTGTCT CCCCAACTGTAG

Peptide Sequence

PEP ID	Zm00001d049160_P003
PEP Infomation	pep chromosome:B73_RefGen_v4:4:18466294:18470669:1 gene:Zm00001d049160 transcript:Zm00001d049160_T003 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:sigma factor sig2A description: sigma factor sig2A
Sequence	MACLAPQFKWAPSAAAHMPSSSSSSSYSRCSALRVHCAVTSAAVVEDRTNGSAAQLRLAY AAPAIQRNFEATLASEALLNEEAVVAAAAAEAVALARAAAEAAQEVVQIVQRNNHQPVIR PKKCVDNYLANEILRTEMRSSSPDMYANNPLMEYLDSYGIMDAEDELDAYAQYTENIAVK SARQSERKARRTRAAIKASTTLHASQKVALSSKKKRSKGSSSSMNPLGSLWKMTGRRLLT AKEEVEFSEGIQDLLKLEAIQAELIEYNGGQPTFSQWATAAGVDEKTLRKRLNYGIYCKN RMVTSNVRLVISIAREFEGPGMDFYDLIQEGMQGLIRGAEKFDSSKGFRFSTYSHWWIKQ AMRKSVSEQSQIFRLPVCPPPKSCSFPDINVLMHYCTLLSPQL

Transcript Sequence

Transcript ID	Zm00001d049160_T003
Transcript Infomation	cdna chromosome:B73_RefGen_v4:4:18466294:18470669:1 gene:Zm00001d049160 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:sigma factor sig2A description: sigma factor sig2A
Sequence	AGAACAAACCTGAATTTCATCCCCACCGTCGCCTCGCTCGACCTCCACCTCTCTTTCCTC CCGGCAGCAATGGAGGCGGCACCCAGGTGAGGCGAGCAAGCAGCCAGCCCTGGCTCCCCG ATGGCGTGCCTGGCGCCGCAGTTCAAGTGGGCGCCGTCGGCCGCCGCCCACATGCCTTCC TCGTCCTCGTCCTCGTCCTACTCCAGGTGCTCCGCGCTCCGCGTCCACTGCGCCGTCACC TCCGCCGCTGTCGTCGAGGACCGCACCAACGGCAGCGCGGCGCAGCTGAGGCTCGCTTAC GCGGCTCCGGCGATTCAGAGAAACTTTGAGGCAACTCTGGCATCAGAAGCACTTCTAAAT GAAGAGGCGGTAGTAGCAGCGGCAGCCGCAGAGGCTGTTGCTCTTGCCAGAGCAGCTGCC GAAGCTGCCCAAGAAGTTGTTCAGATAGTACAAAGAAACAACCATCAGCCGGTAATTAGA CCAAAAAAGTGTGTGGACAACTACTTGGCAAATGAAATCCTTCGCACAGAGATGCGATCG AGCAGTCCTGACATGTATGCTAATAATCCTTTGATGGAGTATCTGGACTCTTATGGTATC ATGGATGCTGAAGATGAATTAGATGCTTATGCACAGTATACTGAGAACATAGCTGTGAAA TCTGCTCGTCAATCTGAGAGAAAAGCTAGGAGAACTAGAGCAGCAATAAAAGCTAGCACA ACCCTCCATGCTTCACAAAAGGTTGCATTATCCTCAAAGAAGAAGCGGTCCAAGGGTTCC TCGTCTAGTATGAATCCTTTAGGTTCGTTGTGGAAGATGACCGGTAGGAGACTTCTTACA GCCAAGGAAGAGGTTGAATTCTCAGAAGGTATTCAGGATCTTTTGAAGCTTGAGGCGATC CAAGCTGAGCTTATAGAGTACAATGGCGGTCAGCCAACCTTCTCGCAGTGGGCAACAGCA GCTGGAGTTGATGAGAAAACTTTGCGCAAGCGCTTGAATTATGGTATTTATTGCAAGAAC AGAATGGTAACATCTAATGTGAGACTTGTAATCTCTATTGCCAGAGAGTTTGAAGGCCCT GGAATGGACTTTTATGATCTTATTCAGGAAGGAATGCAGGGCCTTATAAGGGGAGCTGAA AAATTTGATTCATCAAAAGGTTTTAGGTTCTCTACGTATTCTCACTGGTGGATCAAACAA GCAATGCGTAAATCTGTCTCAGAGCAATCCCAAATATTTCGCTTGCCTGTATGCCCACCA CCCAAATCCTGTTCTTTTCCCGATATCAATGTTTTGATGCACTATTGCACTCTTTTGTCT CCCCAACTGTAGATCATGGTTGGTCATGCATAAGTGACCCATATCTAGGTTAGAAAATTT GAAAGAATAGATTATTGATGCTCAACTAGGATTTATGTTTCCAACGGATGAAATATTTTT CTATATTATATCCATCAGAACCAGTTATCTCGAATACTATATGTTAACCAAACTAATTAA TTCTGGTAACTAGGCTCACATGGTTGAAGCAAGCTACCGTGTAAAGGAGTGTACAAAACG ACTTCGCCGTAAGCTTAGAAGACGACCCACCAATGAAGAAATTGCAGTGGACACTGGTAT TCCAATTAAACGAGTTGAGGCAGCAGTAAACCTCCCAAAATATAGTGTGTCCCTTGATAG CAAAATTGGTTCCACCGACATGACATATCAGGAGGTCACAGCTGATCCCAGTGCTGAGAC AGCTGAAGAGATGCTCAACAGAATGTCCATGAAGAAGGACGTACACATGGCACTAGATAC TCTCACCACTCGCGAGAAGCAAGTTGTTGTTCTGAGGTTTGGGCTCGAGGATGGTCGGAT AAGAACCCTGCAGGAGATCGGTAACATCATGGGTGTGAGCAGGGAGAGAATCCGGCAGAT CGAGTCTGGCGCGTTCCGGAAACTAAGGAGCAAGAAGAAGGTGAAGGCTTTGAAGGATTA TCTGGTGCCAGTAGGCAATTGGTGAACCGTTTGTTTGCAGAATTTGTTTTCCTTTTGGTT CCTCTTTTTTTTTTTGAGGATTCTGTACTTGTACCATTTTACGTGGGTCCTCATGTAAAA CACGCTATCAGAATACTTGCATCACAAGAGGAAAGAGTAGTTTAGTTCCGTGGGAAATGA AGTAAAATTCACAATTT