Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d048899_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:4:7354895:7358497:-1 gene:Zm00001d048899 gene_biotype:protein_coding transcript_biotype:protein_coding description:HVA22-like protein a
Sequence

ATGGGCTCCGGATCTCTGCTCAAGGTCTTCGCCAACAACTTCGACGTCCTTGCAGGGCCT
TTGGTGGCATTGGCTTATCCTTTGTATGCTTCCATTAAGGCAATAGAGACCAAATCTCCT
GTGGATGATCAACAATGGCTCACATATTGGGTCCTGTACTCACTAATAACATTGTTTGAA
CTCACATTTGCATCAATTATTCAGTGGCTTCCTTTCTGGCCTTCAATGAAATTGATCTTT
ATTTGCTGGCTTGTCTTGCCATACTTCAATGGCGCAGCCTATGTGTACCAGAATTATGTG
AGACCTGCCTTCATAAAGAACCAGATGGTCAACATTTGGTATGTCCCTCAGAAAAAAGGC
CTTCTTGGGAAATCTGATGACTTCCTCACAGCACTTGATAAGTTCATTGAAGAAAATGGG
ACTGACGCGCTGAAGAAATTGGCGAACAAGGCTGGCAAGCCATTTAAACAGTCTGGGAAA
TCATCTAAGGATCAGAAAGAGACAAAATCATCAAAGGATTCCAAAGAACCGAAGCCATCA
AAAGATGCAAAGCAACCAAAGCCATCAAAAGATACAAAGGAGCCAAAGCCACCAAAGGTT
TCAAAGTCACCCAAGGACTCCAAAGAACAGAAGAAGGCAACGCTGAAAGATCCGAAGAAA
GCACCAAAGGATTCTAAAGGACTGAAGAAAGCGCTTAAGGATCCGAAAGAACAGGAATCA
TTGGAAGACCCAAAGGAACATACAGCAAAGAAGGCCGGCAAGCGTGTGACGTTCGCCGAG
GTGGAGCCTGAGAAGGAGCTCAAGGCCTCGAACAGTGACTGGCACCCATCCTCTGATTTC
CACGCGGCGTACCCTGAGCAGAACCCATGGGCTAGCGGCTTCATGATCTTTGAGGATGAA
AACAGCTACTGGAACCGAGGACCCCTAGACTGGTAA

Peptide Sequence

PEP ID

Zm00001d048899_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:4:7354895:7358497:-1 gene:Zm00001d048899 transcript:Zm00001d048899_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:HVA22-like protein a
Sequence

MGSGSLLKVFANNFDVLAGPLVALAYPLYASIKAIETKSPVDDQQWLTYWVLYSLITLFE
LTFASIIQWLPFWPSMKLIFICWLVLPYFNGAAYVYQNYVRPAFIKNQMVNIWYVPQKKG
LLGKSDDFLTALDKFIEENGTDALKKLANKAGKPFKQSGKSSKDQKETKSSKDSKEPKPS
KDAKQPKPSKDTKEPKPPKVSKSPKDSKEQKKATLKDPKKAPKDSKGLKKALKDPKEQES
LEDPKEHTAKKAGKRVTFAEVEPEKELKASNSDWHPSSDFHAAYPEQNPWASGFMIFEDE
NSYWNRGPLDW

Transcript Sequence

Transcript ID

Zm00001d048899_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:7354895:7358497:-1 gene:Zm00001d048899 gene_biotype:protein_coding transcript_biotype:protein_coding description:HVA22-like protein a
Sequence

CGCCGGTCTGCCGTCGTCTCGTCTGCTGCACTCCACTGTCCACTCCACTCTCCCACCGCA
CTTTCCTCTCTCCTCCCCTGTTTTCGCTCCCCTCGAGACCCCCAAAGCACCGAAAGGGGG
AGGAGCGGAGGGAGATAGAGAAAGCGGCGGGGTTCAAGAACGCCGCGGCCATCCGGAGCC
AGGATTCTCCCGATACACCCCCTCGTTCCCAGTTCTTCAGTGGCGCCGATTTGGAGTTCC
AGAGACGGCGATGGGCTCCGGATCTCTGCTCAAGGTCTTCGCCAACAACTTCGACGTCCT
TGCAGGGCCTTTGGTGGCATTGGCTTATCCTTTGTATGCTTCCATTAAGGCAATAGAGAC
CAAATCTCCTGTGGATGATCAACAATGGCTCACATATTGGGTCCTGTACTCACTAATAAC
ATTGTTTGAACTCACATTTGCATCAATTATTCAGTGGCTTCCTTTCTGGCCTTCAATGAA
ATTGATCTTTATTTGCTGGCTTGTCTTGCCATACTTCAATGGCGCAGCCTATGTGTACCA
GAATTATGTGAGACCTGCCTTCATAAAGAACCAGATGGTCAACATTTGGTATGTCCCTCA
GAAAAAAGGCCTTCTTGGGAAATCTGATGACTTCCTCACAGCACTTGATAAGTTCATTGA
AGAAAATGGGACTGACGCGCTGAAGAAATTGGCGAACAAGGCTGGCAAGCCATTTAAACA
GTCTGGGAAATCATCTAAGGATCAGAAAGAGACAAAATCATCAAAGGATTCCAAAGAACC
GAAGCCATCAAAAGATGCAAAGCAACCAAAGCCATCAAAAGATACAAAGGAGCCAAAGCC
ACCAAAGGTTTCAAAGTCACCCAAGGACTCCAAAGAACAGAAGAAGGCAACGCTGAAAGA
TCCGAAGAAAGCACCAAAGGATTCTAAAGGACTGAAGAAAGCGCTTAAGGATCCGAAAGA
ACAGGAATCATTGGAAGACCCAAAGGAACATACAGCAAAGAAGGCCGGCAAGCGTGTGAC
GTTCGCCGAGGTGGAGCCTGAGAAGGAGCTCAAGGCCTCGAACAGTGACTGGCACCCATC
CTCTGATTTCCACGCGGCGTACCCTGAGCAGAACCCATGGGCTAGCGGCTTCATGATCTT
TGAGGATGAAAACAGCTACTGGAACCGAGGACCCCTAGACTGGTAA