Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d048710_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:4:3837797:3839930:1 gene:Zm00001d048710 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:benzoxazinone synthesis2 description: benzoxazinone synthesis2
Sequence

ATGGCTGCTCAACTGCATCACGCACTATACGAGCTGCTGCACGAAGCAGCAGCAGCGCAA
CGAGCGCTGCTGCTCGCGATCCCCTTCTCCCTGCTGCTCCTGCCGCTCCTGCTCCGCTAC
CTCGCGGCGTCGGCGTCGGCGTCGGCGTCGGCGACAAAGAACGACGGAGCGGCGGCGGTG
GCGGCCAGCGACCCCGACAAGCTCTTGAGCCTGCTGCCGTCGCCGCCCATGAAGCTCCCC
ATCATCGGGCACCTGCACCTGATGGGGGACATCCCCTACGTGTCCCTCGCCGCGCTCGCC
ACCAGGTACGGCCCGGACCTGATGCTGCTCCGCCTCGGCGCCGTGCCGACCGTGGTGGTC
TCGTCGCCGCGCGTCGCCGAGGCCGTGCTCCGCACCTACGACCACGTCTTCTCCTCCCGC
CCGCGCTCCCTGGTGTCCGACATCATCATGTACGGCGCCACCGACTCGTGCTTCGCGCCC
TACGGCGACCACTTCCGCAAGGCGCGGAAGCTGGTCACCGTGCACCTGCTCAACGCCAGC
AAGGTGCGGTCGCAGCGGCCCGCGCGGGAGGAGGAGGTGCGCGGCGCGCTCGACAGGGTG
CGCCGCGCCGCCGCCGCGCGGGAGGCCCTGGACATGAGCGAGCTCCTGCACTCCTTCGTC
AACAACCTCGTCTGCCGCGCCGTCTCGGGCAAGTTCTCCATGGAGGAAGGCCGCAACAGG
CTGTTCCGGGAGCTCACCGACATCAACGCGGGACTCCTCGGAGGGTTCCACATCCAGGAC
TACTTCCCTAGCCTGGGCCGGATCGAGCTCGTCAGGAAGGTGGCGTGCGCCAAGACCAGG
CGCGTCAGGAAGCGCTGGGACGACCTCCTCGACAAGCTCATCGACGACCATGCGGCCAGG
ATGGCAACCCATCAGGACGAGGACGACGATAAGGACTTCATATACGTCTTGCTGTCTCTT
CAGAAGGAGTATGGCCTCACCAGAGACCATATCAAGGCTATCTTGATAGACATGTTCGAG
GCCGGAACCGACACCTCGTACATGACGTTGGAGTTCGCCATGACGGAGCTCATACGGAAG
CCACACCTGATGAAGAAGCTGCAGGAAGAAGTGCGGCGGAACGTGCCGGCGGGGCAGGAG
ATGGTCACCGAGGACAACCTCCCCGGCATGACCTACCTCAAGGCCGTCATCAAGGAGACG
CTCCGCCTGCACCCGCCGGTCCCGCTCCTCCTCCCGCACTACTCCCTGGACGCCTGCGAG
GTCGCCGGCTACACCATCCCGGCCAACACCCGCGTCGTCGTCAACGCCTGGGCGCTCGGC
CGCCACAGCGGCTACTGGGAGCGCGAGAACGAGTTCGTCCCGGAGAGGTTCCTCAGCGGG
GACGTGGCCGGCGGCGTCGACCTCAAGCCCAACGAGTTCCAGTTCCTGGCGTTCGGGTCC
GGCCGGAGGATGTGCCCCGGGGTCCACTCGGCGTCCGCGACCATCGAGGCGATGCTGTCC
AACCTCATGTACCGGTTCGACTGGCAGCTGCCGGCGGGGATGAAGGCGGAGGACGTGGAC
ATGACCGAGGTGTTTGGGATCACGGTCTCGAGGAAGGAGAAGCTGCTCCTAGTCCCACAG
GCTGCGTGA

Peptide Sequence

PEP ID

Zm00001d048710_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:4:3837797:3839930:1 gene:Zm00001d048710 transcript:Zm00001d048710_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:benzoxazinone synthesis2 description: benzoxazinone synthesis2
Sequence

MAAQLHHALYELLHEAAAAQRALLLAIPFSLLLLPLLLRYLAASASASASATKNDGAAAV
AASDPDKLLSLLPSPPMKLPIIGHLHLMGDIPYVSLAALATRYGPDLMLLRLGAVPTVVV
SSPRVAEAVLRTYDHVFSSRPRSLVSDIIMYGATDSCFAPYGDHFRKARKLVTVHLLNAS
KVRSQRPAREEEVRGALDRVRRAAAAREALDMSELLHSFVNNLVCRAVSGKFSMEEGRNR
LFRELTDINAGLLGGFHIQDYFPSLGRIELVRKVACAKTRRVRKRWDDLLDKLIDDHAAR
MATHQDEDDDKDFIYVLLSLQKEYGLTRDHIKAILIDMFEAGTDTSYMTLEFAMTELIRK
PHLMKKLQEEVRRNVPAGQEMVTEDNLPGMTYLKAVIKETLRLHPPVPLLLPHYSLDACE
VAGYTIPANTRVVVNAWALGRHSGYWERENEFVPERFLSGDVAGGVDLKPNEFQFLAFGS
GRRMCPGVHSASATIEAMLSNLMYRFDWQLPAGMKAEDVDMTEVFGITVSRKEKLLLVPQ
AA

Transcript Sequence

Transcript ID

Zm00001d048710_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:3837797:3839930:1 gene:Zm00001d048710 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:benzoxazinone synthesis2 description: benzoxazinone synthesis2
Sequence

CACCGATGGCCACGGCTAACACAAGCAAGCAAGCAAGTCACTGAGTAGCTAGCAGTATAT
ACCACCATAAAAACAACACACACACACGTGCGCTAATAAGCTAAGCTTAAGGTAGCTCCT
CTCTATCTCCGGCTAGCTCGGACGGACGACGTTGCCATGGCTGCTCAACTGCATCACGCA
CTATACGAGCTGCTGCACGAAGCAGCAGCAGCGCAACGAGCGCTGCTGCTCGCGATCCCC
TTCTCCCTGCTGCTCCTGCCGCTCCTGCTCCGCTACCTCGCGGCGTCGGCGTCGGCGTCG
GCGTCGGCGACAAAGAACGACGGAGCGGCGGCGGTGGCGGCCAGCGACCCCGACAAGCTC
TTGAGCCTGCTGCCGTCGCCGCCCATGAAGCTCCCCATCATCGGGCACCTGCACCTGATG
GGGGACATCCCCTACGTGTCCCTCGCCGCGCTCGCCACCAGGTACGGCCCGGACCTGATG
CTGCTCCGCCTCGGCGCCGTGCCGACCGTGGTGGTCTCGTCGCCGCGCGTCGCCGAGGCC
GTGCTCCGCACCTACGACCACGTCTTCTCCTCCCGCCCGCGCTCCCTGGTGTCCGACATC
ATCATGTACGGCGCCACCGACTCGTGCTTCGCGCCCTACGGCGACCACTTCCGCAAGGCG
CGGAAGCTGGTCACCGTGCACCTGCTCAACGCCAGCAAGGTGCGGTCGCAGCGGCCCGCG
CGGGAGGAGGAGGTGCGCGGCGCGCTCGACAGGGTGCGCCGCGCCGCCGCCGCGCGGGAG
GCCCTGGACATGAGCGAGCTCCTGCACTCCTTCGTCAACAACCTCGTCTGCCGCGCCGTC
TCGGGCAAGTTCTCCATGGAGGAAGGCCGCAACAGGCTGTTCCGGGAGCTCACCGACATC
AACGCGGGACTCCTCGGAGGGTTCCACATCCAGGACTACTTCCCTAGCCTGGGCCGGATC
GAGCTCGTCAGGAAGGTGGCGTGCGCCAAGACCAGGCGCGTCAGGAAGCGCTGGGACGAC
CTCCTCGACAAGCTCATCGACGACCATGCGGCCAGGATGGCAACCCATCAGGACGAGGAC
GACGATAAGGACTTCATATACGTCTTGCTGTCTCTTCAGAAGGAGTATGGCCTCACCAGA
GACCATATCAAGGCTATCTTGATAGACATGTTCGAGGCCGGAACCGACACCTCGTACATG
ACGTTGGAGTTCGCCATGACGGAGCTCATACGGAAGCCACACCTGATGAAGAAGCTGCAG
GAAGAAGTGCGGCGGAACGTGCCGGCGGGGCAGGAGATGGTCACCGAGGACAACCTCCCC
GGCATGACCTACCTCAAGGCCGTCATCAAGGAGACGCTCCGCCTGCACCCGCCGGTCCCG
CTCCTCCTCCCGCACTACTCCCTGGACGCCTGCGAGGTCGCCGGCTACACCATCCCGGCC
AACACCCGCGTCGTCGTCAACGCCTGGGCGCTCGGCCGCCACAGCGGCTACTGGGAGCGC
GAGAACGAGTTCGTCCCGGAGAGGTTCCTCAGCGGGGACGTGGCCGGCGGCGTCGACCTC
AAGCCCAACGAGTTCCAGTTCCTGGCGTTCGGGTCCGGCCGGAGGATGTGCCCCGGGGTC
CACTCGGCGTCCGCGACCATCGAGGCGATGCTGTCCAACCTCATGTACCGGTTCGACTGG
CAGCTGCCGGCGGGGATGAAGGCGGAGGACGTGGACATGACCGAGGTGTTTGGGATCACG
GTCTCGAGGAAGGAGAAGCTGCTCCTAGTCCCACAGGCTGCGTGAGGATGATGATGATAC
TAGTGCAATGCGATACAGGGTTTTAAATTAGTAACACCAAAGGCTGTGTTACTGGACCTT
AATTAATAATTAATAAATGTGCTACTACTATATAGCCAGGCTTCACAGTGACACATACTT
CTATTGCCCATGCTACATATATGTGTTCTTATTTACATCCCCAATAAGTGTTATTGTGTT
GTATCACATTTACCTATATATATCAAATGGAACATTTCTCCAAGTGCTACAATAACG