Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d048577_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:9:159667998:159691083:1 gene:Zm00001d048577 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transmembrane amino acid transporter family protein
Sequence

ATGAGGAGCTCCGTCTCTGAGCGCAGCCTCATCATCGAGAGCGACGACGACGACGACGAC
CATCCCCAATCCCGGTCATCCGCCGCCGCCCGCAGCAGAAGACGCCACCACCAACACGAG
GAGGACTCCGCCGCAGGATCCGACTCCGATTCCGGTTCCTCCTCGTCCTCCTGCGGCACC
CCGCGCGGTCCGGCCACCGACTCCTCCTACACCCAGCAATGGCCACAGAGCTACAGGCAG
TCCATCGACATTCTTAGTAGCGTGCAGTCACCAAATCTGAGCTTCTTGGGAACCCCAACT
CTAAGCAGATTGTCCAACTCTTTTCGGGGTAAAACCCCTGAAATCATCTCCAATCTTGTT
AAGCCACTTCTTCGCCCCACTACAAGTGATGACCACCACCACCACCACCAGCAGCAGCCT
GAAGAAAGAAAGAGTTCTCAGTACCTTCTGCCTTCGAGAAAACCATCTTTGCAACAGATT
CCTGAGGATCAAAAGCCAGTGCCAGTTGCTCATGAGGTGTCTCCGTATCATAAATGCACT
TACACCCAAGCAGTTGTGAATGGAATAAATGTTCTATGTGGTGTGGGAATCCTATCAACA
CCTTATGCCATCAAACAAGGCGGGTGGCTTGGACTGGTGATACTCTGTTTATTTGCAATT
CTAGCTTGGTATACTGGTGTGCTCCTGCGCCGCTGCCTGGACAGCAAGGAGGGCCTTGAG
ACATACCCAGATATTGGTCATGCCGCCTTTGGAGCCACCGGCCGTATAGCCATCTCAATA
ATCCTGTATGTGGAACTGTATGCCTGTTGCATCGAGTATCTGATATTGGAAGGTGACAAT
TTATCAAAATTATTCCCTAATGCGCACCTGAGCGTTGGGAGCTTGACAATGAACTCCCAT
GTACTTTTCACAATCTTGACTACCATCATAGTCATGCCGACCACTTGGCTTCGTGACCTT
AGCTGCCTGAGCTACCTTTCAGCTGGAGGTGTTTTTGCATCAATCCTTGGAGTCATCTGC
CTATTCTGGGTAGGAGTTGTTGATAATGTTGGCTTTGAGAACAAAGGAACTGCTCTGAAC
CTCCCTGGAATCCCTATTGCAATTGGATTGTATGGTTATTGCTACTCAGGGCATGGGGTG
TTTCCAAACATCTACTCTTCTCTGAAGAAGCGCAATCAGTTCCCTTCAATCCTTTTTACT
TGCATTGGGCTGTCTACCATTTTATTTGCTGGTGCAGCGGTGATGGGATACAAAATGTTT
GGTGAAGCCACACAGTCTCAGTTTACACTGAACTTACCAGAGAATTTAGTGGTTTCAAAG
ATTGCAGTTTGGACCACGGTGGCAAATCCAATAACCAAATATCCTTTCTTATATTTGGCT
GGAGTTGCTTCCACCAAATCAACAGAAGTACTCAAACATAGTCATGCTTAG

Peptide Sequence

PEP ID

Zm00001d048577_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:9:159667998:159691083:1 gene:Zm00001d048577 transcript:Zm00001d048577_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transmembrane amino acid transporter family protein
Sequence

MRSSVSERSLIIESDDDDDDHPQSRSSAAARSRRRHHQHEEDSAAGSDSDSGSSSSSCGT
PRGPATDSSYTQQWPQSYRQSIDILSSVQSPNLSFLGTPTLSRLSNSFRGKTPEIISNLV
KPLLRPTTSDDHHHHHQQQPEERKSSQYLLPSRKPSLQQIPEDQKPVPVAHEVSPYHKCT
YTQAVVNGINVLCGVGILSTPYAIKQGGWLGLVILCLFAILAWYTGVLLRRCLDSKEGLE
TYPDIGHAAFGATGRIAISIILYVELYACCIEYLILEGDNLSKLFPNAHLSVGSLTMNSH
VLFTILTTIIVMPTTWLRDLSCLSYLSAGGVFASILGVICLFWVGVVDNVGFENKGTALN
LPGIPIAIGLYGYCYSGHGVFPNIYSSLKKRNQFPSILFTCIGLSTILFAGAAVMGYKMF
GEATQSQFTLNLPENLVVSKIAVWTTVANPITKYPFLYLAGVASTKSTEVLKHSHA

Transcript Sequence

Transcript ID

Zm00001d048577_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:159667998:159691083:1 gene:Zm00001d048577 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transmembrane amino acid transporter family protein
Sequence

GGCGCGGAGTGGAGGACGAGTGGTGTTGCCCACGCAGCGCAGACGCAGTCTCCTTTTCAT
CATCAAGTCCGGAGGGAGAGCCGGAGAACCGGTTCAGCCAGCAGAGTCGCCAAAACAAAA
GCAAAATGAGGAGCTCCGTCTCTGAGCGCAGCCTCATCATCGAGAGCGACGACGACGACG
ACGACCATCCCCAATCCCGGTCATCCGCCGCCGCCCGCAGCAGAAGACGCCACCACCAAC
ACGAGGAGGACTCCGCCGCAGGATCCGACTCCGATTCCGGTTCCTCCTCGTCCTCCTGCG
GCACCCCGCGCGGTCCGGCCACCGACTCCTCCTACACCCAGCAATGGCCACAGAGCTACA
GGCAGTCCATCGACATTCTTAGTAGCGTGCAGTCACCAAATCTGAGCTTCTTGGGAACCC
CAACTCTAAGCAGATTGTCCAACTCTTTTCGGGGTAAAACCCCTGAAATCATCTCCAATC
TTGTTAAGCCACTTCTTCGCCCCACTACAAGTGATGACCACCACCACCACCACCAGCAGC
AGCCTGAAGAAAGAAAGAGTTCTCAGTACCTTCTGCCTTCGAGAAAACCATCTTTGCAAC
AGATTCCTGAGGATCAAAAGCCAGTGCCAGTTGCTCATGAGGTGTCTCCGTATCATAAAT
GCACTTACACCCAAGCAGTTGTGAATGGAATAAATGTTCTATGTGGTGTGGGAATCCTAT
CAACACCTTATGCCATCAAACAAGGCGGGTGGCTTGGACTGGTGATACTCTGTTTATTTG
CAATTCTAGCTTGGTATACTGGTGTGCTCCTGCGCCGCTGCCTGGACAGCAAGGAGGGCC
TTGAGACATACCCAGATATTGGTCATGCCGCCTTTGGAGCCACCGGCCGTATAGCCATCT
CAATAATCCTGTATGTGGAACTGTATGCCTGTTGCATCGAGTATCTGATATTGGAAGGTG
ACAATTTATCAAAATTATTCCCTAATGCGCACCTGAGCGTTGGGAGCTTGACAATGAACT
CCCATGTACTTTTCACAATCTTGACTACCATCATAGTCATGCCGACCACTTGGCTTCGTG
ACCTTAGCTGCCTGAGCTACCTTTCAGCTGGAGGTGTTTTTGCATCAATCCTTGGAGTCA
TCTGCCTATTCTGGGTAGGAGTTGTTGATAATGTTGGCTTTGAGAACAAAGGAACTGCTC
TGAACCTCCCTGGAATCCCTATTGCAATTGGATTGTATGGTTATTGCTACTCAGGGCATG
GGGTGTTTCCAAACATCTACTCTTCTCTGAAGAAGCGCAATCAGTTCCCTTCAATCCTTT
TTACTTGCATTGGGCTGTCTACCATTTTATTTGCTGGTGCAGCGGTGATGGGATACAAAA
TGTTTGGTGAAGCCACACAGTCTCAGTTTACACTGAACTTACCAGAGAATTTAGTGGTTT
CAAAGATTGCAGTTTGGACCACGGTGGCAAATCCAATAACCAAATATCCTTTCTTATATT
TGGCTGGAGTTGCTTCCACCAAATCAACAGAAGTACTCAAACATAGTCATGCTTAGATCA
GCCCTGGTGGTGTCAACCCTCCTCATTGCTCTATCTGTACCCTTTTTTGGACTTGTGATG
GCCTTAGTTGGTTCTTTACTTACGATGCTTGTGACCTATATTCTACCTTGCGCGTGCTTT
TTAGCAATTCTTAGGAGAAAAGTGAGCTGGCACCAGGTAGCAGTATGCTCGTTCATCATC
GTGGTTGGGGTTTGCTGCGCTTGTGTGGGAACATACTCGTCTCTGTCAAAGATAATCCAG
AACTACACATGATACAGTTGTTCCTGCAATCCAAATTTATGTCCAAACTCAATGAGCCAA
ACTGCCCAGCAAATTAGTCAAGTCGATGTATCATAAATTTGTGAGATGTCCATGTTTGCA
TGTTAATGGATCAACACAAATAATACGTTTGTGGCAAGGATTTGAGACAATATTTCTGAA
CAAAAGATGAGGTTGATTTTGTGTTGTGGATGTCTCGTGTCAAGATTCTTTGCGAGCAAA
TGGAGAAGAAAATTAAATTAAG