Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d048568_T011
CDS Infomation

cds chromosome:B73_RefGen_v4:9:159041271:159047423:1 gene:Zm00001d048568 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGCCTGCTTCTGCTTGCACACATCTTGATTCTGGTTGTACTAGGAAATATACAAGGTTC
AAGAATATTCACGCAGTTTATGATGAAGATTATGACAGGGATCCTAAGAGGATCAAAACT
GAAATCATTGATTCGGAACTAAGTGTTGGTTCTGTCAGTGACAAGGATAGTGAACAAGAT
TGTGATGATGTATTTCTCAAGGATCTCAGGACTCAGTGTAAAGCAAAGAATTGGAAGACT
TCAAAAATCACATCGGAAGGATGTGGCATTAAGAATCAGGCTAAAACAGAAGATGACATT
GATCTTGATAAGCCTCTTATTGCATTGAAACAAAAGAGTCCAAAAACATCTCTTGCTAAG
GATAATGTAAAGATGAATGCACTAAGATCTTCTCCATGTGCTACGAAAGAGGAAGATACA
ACATCACATAGAGACAAGATTCTTAGTTCTTCCCTGATCAAAGCAACAATGCAAGACCCA
GTATTAGAGAAGCTTGGAAGGAAATTTGCAGAACTGGAGCAGTCTAAAGTTGTTATTGAT
TGTACTGAAATCGTTGGTGATCAAATTTGTTGTGTTGAAGTGAACAATACAGCTGGAGCT
CTAGCGAGCTGTGCAAAACCTGATGTACTTTGTGAAATAAAAGCTGAAGATACAAATTAT
TCTGAATTTGGAACTTCTATCTGTTCCATAAAGAATCCTGAGCATTCATCCTTTAAGCTG
CAACAGAAGCTGGTAGCGGGTGATGACTGTGTGCCTCAATATTGTTTCATGACTCGACCA
GCTCAATTAGCCGATGTTTCTGATCATCCCTGCGAACAAACCTGCAGTATCAACAATTTT
GATGACATTACAGCTGCAAAAGCAATTGAGGTTTCTTCGTTAGGTCTCACTGATGAAACG
AGCAATCATCAGAAAACATCTGAAAATCTAACTGACTCAGATGTGTGTAAGTCCTCTACC
GCAAATGGGTTTATAGCTTGTTCTTTCAATCAGTCCTGCCATGATCTTGTGGATAGCGAT
GAACATTGGAATTTATTTGTTCATCGGAATGAGCCTGTGAAGCTTTTGGAAGAGTTGTCT
TCTGTTGATGAATCATGCGCAGATACTCAATCTGATTTATGTGGAAGCACAAAAATGAAT
TGCACTTCCCTTGAGGGGGTTGTGCAGATGCAGGCTGAGGGCCAATTGGATTCAATAGTC
TGCTGTGGTGTAAGGCCAAAGCATATGTTACTAGATATGGAAATTAGACATACAGAAACT
GGTGTATTCACCTTTGATAAGACTATTGACTTGGCTCATCCTGCCAATTTTGTTGCACAA
GATGGAAGGCTAGAAAGTATAGTATACGATGTTTTGAATAATCATGCACAAAGGACAGCC
TCTAAAAACGAATCTTCTGTTGGACTCCCAGAAACTGCTGTGAGTCAGAGCTCACTTATT
GACTTCACTGACAATTGTGTTGAAGACAAAAGGGCTTCAGTTGATAAAATTTTACCTCCC
AATAATCTAGACTGGCCATTGAAGGATAAGTTAAATTCTACAACAGACTATGACATTTGT
AGGCCTATTAATGATGATGAAGGATCAGAAGAAGAATTAGTGCCTCAACATCAGTTATAC
CAGTCGTGTAGTGATAAATTCAACCTTAGCAGTGCCATGCCAGAGATTTCTAATGCTGAA
GATTCACAAAAAATATCTGCCGGAGCTCAAAATTCTTCTGCTACCTTTTTGGAAACTGAT
GGGCGAATTAAAAAGCCAAATTTTTTTGTGGATGAAGAACCAATTGAAGAAAACACTCCA
AAAGTATTACTGTCCAAGAGAAAGATTATGTCACCGATGTCTCAGGAGAAGCTTTGCAGT
GCTCTGACTGGCATTGATTTGTGTGATGGAGTTCAAAGATTTAAGAGCAAAATCATTATT
GAAGATCATGATAAAACTACAATATCATTGCCTCAACCAGCACACATGCAAGACAGATCA
ATGTTGTCCACAGACAGGAGACTTAAGAGCAGGACTTTTGTCTCCCCTACAAGCAAAGGA
GTTCTGAAGTCAACAGGATCCCCACCCCATCAACATACAACTTGCTCTTGCACGAGAAGT
TCACCAGTGGTCTTAGACACCGAGAAAGCTGTTGAATTTTCACAAAGACAGATGCATGAT
ATAGAAAATATAGCTGCTAAGCTTATCAGGAGCTTGAAGCACATGAAAAGTATAGTGGAT
GAAAGTTTGTCAACAGAAGCATATTCATTACTTCCTAATTTTAACATTGCTGAGATCAGA
GCAGCCTCTGAGGATGCATTAGAAGTGGAGAGGACTACGAGGAAATGGCTGTCGATAATG
AACAAAGACTGCAGTCGCTTTTGTAAAATATTGAGCCTAGCAAAGAAGAACGATGTTTCT
CATCCTGAAGCACCAAGGAAACAAAGAAAAATAACGTTTGCAGATGAAGCTGGAGGAATG
CTCTGCCATGTTAAGGTTTTCAAGGATGGACAAGCCTCTCTTCTTTCTGAATGCCAGAGT
GATTTATAG

Peptide Sequence

PEP ID

Zm00001d048568_P011
PEP Infomation

pep chromosome:B73_RefGen_v4:9:159041271:159047423:1 gene:Zm00001d048568 transcript:Zm00001d048568_T011 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MPASACTHLDSGCTRKYTRFKNIHAVYDEDYDRDPKRIKTEIIDSELSVGSVSDKDSEQD
CDDVFLKDLRTQCKAKNWKTSKITSEGCGIKNQAKTEDDIDLDKPLIALKQKSPKTSLAK
DNVKMNALRSSPCATKEEDTTSHRDKILSSSLIKATMQDPVLEKLGRKFAELEQSKVVID
CTEIVGDQICCVEVNNTAGALASCAKPDVLCEIKAEDTNYSEFGTSICSIKNPEHSSFKL
QQKLVAGDDCVPQYCFMTRPAQLADVSDHPCEQTCSINNFDDITAAKAIEVSSLGLTDET
SNHQKTSENLTDSDVCKSSTANGFIACSFNQSCHDLVDSDEHWNLFVHRNEPVKLLEELS
SVDESCADTQSDLCGSTKMNCTSLEGVVQMQAEGQLDSIVCCGVRPKHMLLDMEIRHTET
GVFTFDKTIDLAHPANFVAQDGRLESIVYDVLNNHAQRTASKNESSVGLPETAVSQSSLI
DFTDNCVEDKRASVDKILPPNNLDWPLKDKLNSTTDYDICRPINDDEGSEEELVPQHQLY
QSCSDKFNLSSAMPEISNAEDSQKISAGAQNSSATFLETDGRIKKPNFFVDEEPIEENTP
KVLLSKRKIMSPMSQEKLCSALTGIDLCDGVQRFKSKIIIEDHDKTTISLPQPAHMQDRS
MLSTDRRLKSRTFVSPTSKGVLKSTGSPPHQHTTCSCTRSSPVVLDTEKAVEFSQRQMHD
IENIAAKLIRSLKHMKSIVDESLSTEAYSLLPNFNIAEIRAASEDALEVERTTRKWLSIM
NKDCSRFCKILSLAKKNDVSHPEAPRKQRKITFADEAGGMLCHVKVFKDGQASLLSECQS
DL

Transcript Sequence

Transcript ID

Zm00001d048568_T011
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:159041271:159047423:1 gene:Zm00001d048568 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ACAGGAAATATTTTTCGATCTGTACCATTGCTTTCCAAAGCCACAATGCCTGCTTCTGCT
TGCACACATCTTGATTCTGGTTGTACTAGGAAATATACAAGGTTCAAGAATATTCACGCA
GTTTATGATGAAGATTATGACAGGGATCCTAAGAGGATCAAAACTGAAATCATTGATTCG
GAACTAAGTGTTGGTTCTGTCAGTGACAAGGATAGTGAACAAGATTGTGATGATGTATTT
CTCAAGGATCTCAGGACTCAGTGTAAAGCAAAGAATTGGAAGACTTCAAAAATCACATCG
GAAGGATGTGGCATTAAGAATCAGGCTAAAACAGAAGATGACATTGATCTTGATAAGCCT
CTTATTGCATTGAAACAAAAGAGTCCAAAAACATCTCTTGCTAAGGATAATGTAAAGATG
AATGCACTAAGATCTTCTCCATGTGCTACGAAAGAGGAAGATACAACATCACATAGAGAC
AAGATTCTTAGTTCTTCCCTGATCAAAGCAACAATGCAAGACCCAGTATTAGAGAAGCTT
GGAAGGAAATTTGCAGAACTGGAGCAGTCTAAAGTTGTTATTGATTGTACTGAAATCGTT
GGTGATCAAATTTGTTGTGTTGAAGTGAACAATACAGCTGGAGCTCTAGCGAGCTGTGCA
AAACCTGATGTACTTTGTGAAATAAAAGCTGAAGATACAAATTATTCTGAATTTGGAACT
TCTATCTGTTCCATAAAGAATCCTGAGCATTCATCCTTTAAGCTGCAACAGAAGCTGGTA
GCGGGTGATGACTGTGTGCCTCAATATTGTTTCATGACTCGACCAGCTCAATTAGCCGAT
GTTTCTGATCATCCCTGCGAACAAACCTGCAGTATCAACAATTTTGATGACATTACAGCT
GCAAAAGCAATTGAGGTTTCTTCGTTAGGTCTCACTGATGAAACGAGCAATCATCAGAAA
ACATCTGAAAATCTAACTGACTCAGATGTGTGTAAGTCCTCTACCGCAAATGGGTTTATA
GCTTGTTCTTTCAATCAGTCCTGCCATGATCTTGTGGATAGCGATGAACATTGGAATTTA
TTTGTTCATCGGAATGAGCCTGTGAAGCTTTTGGAAGAGTTGTCTTCTGTTGATGAATCA
TGCGCAGATACTCAATCTGATTTATGTGGAAGCACAAAAATGAATTGCACTTCCCTTGAG
GGGGTTGTGCAGATGCAGGCTGAGGGCCAATTGGATTCAATAGTCTGCTGTGGTGTAAGG
CCAAAGCATATGTTACTAGATATGGAAATTAGACATACAGAAACTGGTGTATTCACCTTT
GATAAGACTATTGACTTGGCTCATCCTGCCAATTTTGTTGCACAAGATGGAAGGCTAGAA
AGTATAGTATACGATGTTTTGAATAATCATGCACAAAGGACAGCCTCTAAAAACGAATCT
TCTGTTGGACTCCCAGAAACTGCTGTGAGTCAGAGCTCACTTATTGACTTCACTGACAAT
TGTGTTGAAGACAAAAGGGCTTCAGTTGATAAAATTTTACCTCCCAATAATCTAGACTGG
CCATTGAAGGATAAGTTAAATTCTACAACAGACTATGACATTTGTAGGCCTATTAATGAT
GATGAAGGATCAGAAGAAGAATTAGTGCCTCAACATCAGTTATACCAGTCGTGTAGTGAT
AAATTCAACCTTAGCAGTGCCATGCCAGAGATTTCTAATGCTGAAGATTCACAAAAAATA
TCTGCCGGAGCTCAAAATTCTTCTGCTACCTTTTTGGAAACTGATGGGCGAATTAAAAAG
CCAAATTTTTTTGTGGATGAAGAACCAATTGAAGAAAACACTCCAAAAGTATTACTGTCC
AAGAGAAAGATTATGTCACCGATGTCTCAGGAGAAGCTTTGCAGTGCTCTGACTGGCATT
GATTTGTGTGATGGAGTTCAAAGATTTAAGAGCAAAATCATTATTGAAGATCATGATAAA
ACTACAATATCATTGCCTCAACCAGCACACATGCAAGACAGATCAATGTTGTCCACAGAC
AGGAGACTTAAGAGCAGGACTTTTGTCTCCCCTACAAGCAAAGGAGTTCTGAAGTCAACA
GGATCCCCACCCCATCAACATACAACTTGCTCTTGCACGAGAAGTTCACCAGTGGTCTTA
GACACCGAGAAAGCTGTTGAATTTTCACAAAGACAGATGCATGATATAGAAAATATAGCT
GCTAAGCTTATCAGGAGCTTGAAGCACATGAAAAGTATAGTGGATGAAAGTTTGTCAACA
GAAGCATATTCATTACTTCCTAATTTTAACATTGCTGAGATCAGAGCAGCCTCTGAGGAT
GCATTAGAAGTGGAGAGGACTACGAGGAAATGGCTGTCGATAATGAACAAAGACTGCAGT
CGCTTTTGTAAAATATTGAGCCTAGCAAAGAAGAACGATGTTTCTCATCCTGAAGCACCA
AGGAAACAAAGAAAAATAACGTTTGCAGATGAAGCTGGAGGAATGCTCTGCCATGTTAAG
GTTTTCAAGGATGGACAAGCCTCTCTTCTTTCTGAATGCCAGAGTGATTTATAGACATAC
TAAACTGGTTATCATCATGAGATTTGATCAGAAAAGCAACATTCTTGAGTGTTGGCAATA
TCAAAAAAGCTGCTCACTTGAACCAAAATAATGA