Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d048562_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:9:158799917:158813152:-1 gene:Zm00001d048562 gene_biotype:protein_coding transcript_biotype:protein_coding description:2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Sequence

ATGGCGGGGAGCCTGCACCTTCCCGTGGTGGACCTCGCGTTGCCGGACCTCCGCGCCGCC
GCTGAATCCATCCGACAGGCGTGCGTGGAGCACGGGTTCTTCTACGTGACCAACCACGGA
GTGGACCGCGGCCTGCTCGAGGCGGTGTTCGCGGAGAGCAAGAGGTTCTTCGACCTGCCT
ATGGAGGATAAGATGGCGCTGCTCAGGGGCGCAAACCACCGGGGTTACACGCCGCCCTAC
GCCGAGAAGCTCGACGCCTCTTCCCAGTTCGTAGGAGACCTTAAGGAGAGTTTTTACATT
GGGCCTCTTGATGATGGTGATATGCATAACGATGTAAACCAGTGGCCTTCTGAAGAGCGC
TTGCCATCTTGGAAGGAGACAATGAAGCTATACTTTGCAGCTGTTCTGGATACTGGCACA
AGGATACTCTCTCTAGTTGCTTTGGGTTTGGATTTGGATGCTGATTTCTTTCATAAAATT
GGTGCATTGAAATGCCCGTCAACATTTCTTCGGTTATTGCATTACCCTGGTGAAGTACAT
GAGTCTGATAGTGGAAACTATGGTGCGTCAGCTCACTCGGACTATGGTATGATAACTCTT
TTAGTGACAGATGGCACTCCTGGCCTGCAGGTATGCTACCGGTTCTCAAAAAGTTCAGTT
CATCACTGTCTAGTTTTATTCTCTTTTGTGGCTAATCGCTCGTGGATTATCTCTTGCCAC
CCTCAAAGGAACATGTGCTCTTGTTTAGAAATTCAAAACAATGTCTTCATCTATTGTCAT
GTTTATCCTTATATTATGGCTCCTTATGCTATTAGCGTACAGATATGCAGGGAGAAGGAT
AGGAATCCCCAACTATGGGAAGATGTTCATCATATTGATGGGGCCCTTATTATTAATATT
GGTGATTTGCTAGAGAGGTGGACGAATTGTGCTTTCAGATCAACTTTGCATCGTGTTGTT
GCAATCGGTAAAGAGCGGTATTCGGTGAGTGTATAA

Peptide Sequence

PEP ID

Zm00001d048562_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:9:158799917:158813152:-1 gene:Zm00001d048562 transcript:Zm00001d048562_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Sequence

MAGSLHLPVVDLALPDLRAAAESIRQACVEHGFFYVTNHGVDRGLLEAVFAESKRFFDLP
MEDKMALLRGANHRGYTPPYAEKLDASSQFVGDLKESFYIGPLDDGDMHNDVNQWPSEER
LPSWKETMKLYFAAVLDTGTRILSLVALGLDLDADFFHKIGALKCPSTFLRLLHYPGEVH
ESDSGNYGASAHSDYGMITLLVTDGTPGLQVCYRFSKSSVHHCLVLFSFVANRSWIISCH
PQRNMCSCLEIQNNVFIYCHVYPYIMAPYAISVQICREKDRNPQLWEDVHHIDGALIINI
GDLLERWTNCAFRSTLHRVVAIGKERYSVSV

Transcript Sequence

Transcript ID

Zm00001d048562_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:158799917:158813152:-1 gene:Zm00001d048562 gene_biotype:protein_coding transcript_biotype:protein_coding description:2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Sequence

CAGCAATTCACCGGCGGCTTCCGCTCCAAGCTTCAGCCAAGCCGGAGATGGCGGGGAGCC
TGCACCTTCCCGTGGTGGACCTCGCGTTGCCGGACCTCCGCGCCGCCGCTGAATCCATCC
GACAGGCGTGCGTGGAGCACGGGTTCTTCTACGTGACCAACCACGGAGTGGACCGCGGCC
TGCTCGAGGCGGTGTTCGCGGAGAGCAAGAGGTTCTTCGACCTGCCTATGGAGGATAAGA
TGGCGCTGCTCAGGGGCGCAAACCACCGGGGTTACACGCCGCCCTACGCCGAGAAGCTCG
ACGCCTCTTCCCAGTTCGTAGGAGACCTTAAGGAGAGTTTTTACATTGGGCCTCTTGATG
ATGGTGATATGCATAACGATGTAAACCAGTGGCCTTCTGAAGAGCGCTTGCCATCTTGGA
AGGAGACAATGAAGCTATACTTTGCAGCTGTTCTGGATACTGGCACAAGGATACTCTCTC
TAGTTGCTTTGGGTTTGGATTTGGATGCTGATTTCTTTCATAAAATTGGTGCATTGAAAT
GCCCGTCAACATTTCTTCGGTTATTGCATTACCCTGGTGAAGTACATGAGTCTGATAGTG
GAAACTATGGTGCGTCAGCTCACTCGGACTATGGTATGATAACTCTTTTAGTGACAGATG
GCACTCCTGGCCTGCAGGTATGCTACCGGTTCTCAAAAAGTTCAGTTCATCACTGTCTAG
TTTTATTCTCTTTTGTGGCTAATCGCTCGTGGATTATCTCTTGCCACCCTCAAAGGAACA
TGTGCTCTTGTTTAGAAATTCAAAACAATGTCTTCATCTATTGTCATGTTTATCCTTATA
TTATGGCTCCTTATGCTATTAGCGTACAGATATGCAGGGAGAAGGATAGGAATCCCCAAC
TATGGGAAGATGTTCATCATATTGATGGGGCCCTTATTATTAATATTGGTGATTTGCTAG
AGAGGTGGACGAATTGTGCTTTCAGATCAACTTTGCATCGTGTTGTTGCAATCGGTAAAG
AGCGGTATTCGGTGAGTGTATAATAACTTACTTTTCTTTAGAAGCAGGGATAAGTTTTAT
TCTGACCTCTGCATAAGCATGCACTCATCCATCAGCTGTGGTTGATATTCCAACAAATAG
CAATTAGGTCCAAGCATTATAAGAGGAAAATACTTAAGCACAAAGATATCCATTCAGGCA
TGTCCTTCTGGGGAAGATCTCCAGGATTTTTTTTTTGTCCTAAGAGTTCTCACTTAATGT
TAGCCTGTACTTCCTTCTTGTTCAGCCTTGCATATATGAACATATTCTGCCTACTCAAAG
TTCATAGTAAGAATTTTAAGGAGCATTATGTGCCTTTACACAAGTTTTTGGACGTACCAG
GTGGCTTTCTTTCTTGATCCAAATCCTGACACACTGGTGCAGTGTTTGGAAAGTTGTTGC
AGTGAAGCATGTCCACCAAGGTTTCCACCTATCAAGAGTTGGGACTACATAGCCGGGCGA
CTAAATTCAACTTACAAATAATCACCACCACGTTTGTAATGCTATGCTCGTTTACAACAG
CTTGACACCACAGTAATGTTTGAACCCAGGATTAAAGATAGTTTTCAAGAAAGGCGGAGC
TATGTATGTGAGCTGGATCTCCATGTCTCCCCTCCCCCTAGTGTCTGGAGGAGTGCACTT
TCTGGATCACGCGTCGTCAGGAAGCAAGCAAGCAAGCATACGCGCAATTCCCGCTGCGCA
ATTCCCGATCGTACCCTGCTCCAAATCTTTGTGCAAGTCTCTGCTCCCTTGAATGCAACT
GATGCCAATCCCATCAATCTCTTTCTTTGAAAGGAGACATACTGCTTCCTCTAGTTTCAT
ACCTGCTGAACACGATCAATGGTTTGCATGTACTCTAAGATATACATGACCCGCATGATT
GCTATAGTAAAGACTATTAAAAATGAATTTAGCTGACT