Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d048430_T016
CDS Infomation

cds chromosome:B73_RefGen_v4:9:156098901:156104795:1 gene:Zm00001d048430 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein kinase domain superfamily protein

Sequence

ATGGGTGGACCTGTCAAAGATGCTAACGACATGCTCACAAGGTGGCTGGAGAAGAGTACT
GAGCTGAGAACATCGCTACAAACAAGTTTGTTGCCTATTGGTTGCATCAAGATAGGGTTA
TCACGTCACCGTGCCCTACTTTTCAAGATCCTTGCCGATAGTGTTGGGATTCCATGCAAA
CTTGTCAAAGGGAGCAATTATACTGGTGGTGATGATGACGATGCTATAAACATAATTAAG
ATGGACAATGAAAGGGAGTTTTTGGTTGATCTGATGGCTGCTCCTGGTGCTCTTATTCCA
GCAGATATCTTAAGTTGGAAAGGCAATTCGTTAAATTCTAATCGAAAACTCGGCCTGAAT
CGAACAGCTGGATCATCAAGTACTGTTGATGCTAATGTGGATCCTACTGTATTGCCACTT
GAACCTAAAGGTGGCCAACTGCCTTTGTTCAGCAGTGGTGATTGGATGTCAGACATTGAT
TCTGGATATGAGGCAGCAGAAATTGCAGCTTCTACTCAAACCTCTTCGGGTGTCACACCA
TCTGTTTCTGCTGGAAGTGTTTTTGGCAGTTCATGGATGCTGGTTAATCATGACCAATCA
GATGGACCATCAACTTCTGCTGGTACATCATCGCAGCAGAAAGTTGTACCTCAAAGCGAG
CATCAGCGGAATTTAAACCGCCTTCCAGATCTGCAGGAAATTCCAGAGTCAAAATACCTT
TTTGCTGATCTTGTTCCTTCTGGGGATAATAAGTCTAAGAAAACTTCAGTACCATTCAAA
GGACCAGATCATAGGAACAATGAGTTGCAAAAGCGCAGAGAGAACATTGTCCCTAATGCT
GGAAGACCACAGCAGCGGTTAGTTATGAAGAATTGGTCTCCTTACAATGATGTTTCCAAC
AACAAACAGTACAATTATGTCGAGGATTCGTTTGCTCGTAGAAATGTTGGTAATAATGCT
GCATCATCATCATCCCAGATGCCACGACCAGCCGTAAGATCTAACCTTAATTCTGGATTG
CATAATGATGCATCATATCATAATTATGATAGCATTATGGCTGGTACCTCTGCCATGAAG
ATTACATCTACAGCTGAGACCGGGAAGGTTCCTGAAAGGGTTCTGCGTGGTGATTTGGAC
AAGGGTCAAACAAATTATAGATTGGAGGATCAACATGTCATAGTTCAACCACCACAGGGA
AGACTTCCATGGGGTAATCCTGCAGAAGGAAGAGTTCCAATGAATAGAGTTCAGAGTCAA
GCAAAACAACACTTGGAAAACATGGATGCAAAGCAAGACCATAAGAAATTGCTCCCTGAT
CCAAAAAAATCTCCCCTTGACAGATTCATGGACACATCATTGCCTTCAAGAAACATGGAC
ATGAGGTCACAGAGGCTTGACTTCGATGATGTCTCTGAGTGCGAAATTCCTTGGGAAGAT
CTTGTGATTGGTGAAAGGATTGGCTTAGGTTCATATGGAGAGGTTTACCGTGCTGACTGG
AATGGAACCGAAGTAGCTGTAAAAAAATTCTTGGATCAAGATTTTTATGGCGATGCTCTG
GATGAGTTTAGGAGTGAAGTTCGAATTATGCGTCGGCTGCGCCATCCAAATATTGTTCTC
TTTATGGGTGCTGTTACACGCCCTCCGAACTTATCTATTGTATCTGAATATCTTCCAAGG
GGAAGCTTGTATAAGATCCTTCACCGCCCTAATTGCCTAATTGATGAAAAGCGGAGGATC
AAGATGGCCCTTGATGTGGCCAAAGGTATGAATTGCCTGCACACTAGCATGCCTACAATT
GTTCATCGAGATCTGAAATCTCCAAACTTGCTGGTTGACAATAATTGGAATGTTAAGGTT
TGTGACTTTGGACTTTCGCGGTTGAAGCACAGTACATTTTTGTCATCCAAATCTACAGCT
GGAACACCTGAGTGGATGGCACCTGAGGTTCTGCGGAATGAACAATCGAATGAAAAGTGT
GATGTTTATAGCTTTGGTGTCATCTTATGGGAACTGGCAACACTTAGAATGCCATGGAGT
GGGATGAATCCAATGCAAGTTGTGGGGGCAGTTGGTTTCCAGGATAGACGGCTTGATATT
CCCAAGGAAGTTGATCCTCTGGTCGCAAGGATAATATTTGAATGCTGGCAGAAGGATCCA
AATTTGCGCCCGTCATTTGCACAGTTAACAAGTGCCCTGAAGACTGTTCAAAGACTAGTG
ACCCTTTGTCACCAGGAGAACCAGAGCCCCCATGTTCAACAAGAAATCTCAGTGCATTTG
ACTCCTTAG

Peptide Sequence

PEP ID

Zm00001d048430_P016
PEP Infomation

pep chromosome:B73_RefGen_v4:9:156098901:156104795:1 gene:Zm00001d048430 transcript:Zm00001d048430_T016 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein kinase domain superfamily protein

Sequence

MGGPVKDANDMLTRWLEKSTELRTSLQTSLLPIGCIKIGLSRHRALLFKILADSVGIPCK
LVKGSNYTGGDDDDAINIIKMDNEREFLVDLMAAPGALIPADILSWKGNSLNSNRKLGLN
RTAGSSSTVDANVDPTVLPLEPKGGQLPLFSSGDWMSDIDSGYEAAEIAASTQTSSGVTP
SVSAGSVFGSSWMLVNHDQSDGPSTSAGTSSQQKVVPQSEHQRNLNRLPDLQEIPESKYL
FADLVPSGDNKSKKTSVPFKGPDHRNNELQKRRENIVPNAGRPQQRLVMKNWSPYNDVSN
NKQYNYVEDSFARRNVGNNAASSSSQMPRPAVRSNLNSGLHNDASYHNYDSIMAGTSAMK
ITSTAETGKVPERVLRGDLDKGQTNYRLEDQHVIVQPPQGRLPWGNPAEGRVPMNRVQSQ
AKQHLENMDAKQDHKKLLPDPKKSPLDRFMDTSLPSRNMDMRSQRLDFDDVSECEIPWED
LVIGERIGLGSYGEVYRADWNGTEVAVKKFLDQDFYGDALDEFRSEVRIMRRLRHPNIVL
FMGAVTRPPNLSIVSEYLPRGSLYKILHRPNCLIDEKRRIKMALDVAKGMNCLHTSMPTI
VHRDLKSPNLLVDNNWNVKVCDFGLSRLKHSTFLSSKSTAGTPEWMAPEVLRNEQSNEKC
DVYSFGVILWELATLRMPWSGMNPMQVVGAVGFQDRRLDIPKEVDPLVARIIFECWQKDP
NLRPSFAQLTSALKTVQRLVTLCHQENQSPHVQQEISVHLTP

Transcript Sequence

Transcript ID

Zm00001d048430_T016
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:156098901:156104795:1 gene:Zm00001d048430 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein kinase domain superfamily protein

Sequence

CATCCTGTTGGACTTCCCTGTTGCCAATATTGCACTCTTAGTGCAAAGAATAGCTGAGCT
TGTTACAGATAATATGGGTGGACCTGTCAAAGATGCTAACGACATGCTCACAAGGTGGCT
GGAGAAGAGTACTGAGCTGAGAACATCGCTACAAACAAGTTTGTTGCCTATTGGTTGCAT
CAAGATAGGGTTATCACGTCACCGTGCCCTACTTTTCAAGATCCTTGCCGATAGTGTTGG
GATTCCATGCAAACTTGTCAAAGGGAGCAATTATACTGGTGGTGATGATGACGATGCTAT
AAACATAATTAAGATGGACAATGAAAGGGAGTTTTTGGTTGATCTGATGGCTGCTCCTGG
TGCTCTTATTCCAGCAGATATCTTAAGTTGGAAAGGCAATTCGTTAAATTCTAATCGAAA
ACTCGGCCTGAATCGAACAGCTGGATCATCAAGTACTGTTGATGCTAATGTGGATCCTAC
TGTATTGCCACTTGAACCTAAAGGTGGCCAACTGCCTTTGTTCAGCAGTGGTGATTGGAT
GTCAGACATTGATTCTGGATATGAGGCAGCAGAAATTGCAGCTTCTACTCAAACCTCTTC
GGGTGTCACACCATCTGTTTCTGCTGGAAGTGTTTTTGGCAGTTCATGGATGCTGGTTAA
TCATGACCAATCAGATGGACCATCAACTTCTGCTGGTACATCATCGCAGCAGAAAGTTGT
ACCTCAAAGCGAGCATCAGCGGAATTTAAACCGCCTTCCAGATCTGCAGGAAATTCCAGA
GTCAAAATACCTTTTTGCTGATCTTGTTCCTTCTGGGGATAATAAGTCTAAGAAAACTTC
AGTACCATTCAAAGGACCAGATCATAGGAACAATGAGTTGCAAAAGCGCAGAGAGAACAT
TGTCCCTAATGCTGGAAGACCACAGCAGCGGTTAGTTATGAAGAATTGGTCTCCTTACAA
TGATGTTTCCAACAACAAACAGTACAATTATGTCGAGGATTCGTTTGCTCGTAGAAATGT
TGGTAATAATGCTGCATCATCATCATCCCAGATGCCACGACCAGCCGTAAGATCTAACCT
TAATTCTGGATTGCATAATGATGCATCATATCATAATTATGATAGCATTATGGCTGGTAC
CTCTGCCATGAAGATTACATCTACAGCTGAGACCGGGAAGGTTCCTGAAAGGGTTCTGCG
TGGTGATTTGGACAAGGGTCAAACAAATTATAGATTGGAGGATCAACATGTCATAGTTCA
ACCACCACAGGGAAGACTTCCATGGGGTAATCCTGCAGAAGGAAGAGTTCCAATGAATAG
AGTTCAGAGTCAAGCAAAACAACACTTGGAAAACATGGATGCAAAGCAAGACCATAAGAA
ATTGCTCCCTGATCCAAAAAAATCTCCCCTTGACAGATTCATGGACACATCATTGCCTTC
AAGAAACATGGACATGAGGTCACAGAGGCTTGACTTCGATGATGTCTCTGAGTGCGAAAT
TCCTTGGGAAGATCTTGTGATTGGTGAAAGGATTGGCTTAGGTTCATATGGAGAGGTTTA
CCGTGCTGACTGGAATGGAACCGAAGTAGCTGTAAAAAAATTCTTGGATCAAGATTTTTA
TGGCGATGCTCTGGATGAGTTTAGGAGTGAAGTTCGAATTATGCGTCGGCTGCGCCATCC
AAATATTGTTCTCTTTATGGGTGCTGTTACACGCCCTCCGAACTTATCTATTGTATCTGA
ATATCTTCCAAGGGGAAGCTTGTATAAGATCCTTCACCGCCCTAATTGCCTAATTGATGA
AAAGCGGAGGATCAAGATGGCCCTTGATGTGGCCAAAGGTATGAATTGCCTGCACACTAG
CATGCCTACAATTGTTCATCGAGATCTGAAATCTCCAAACTTGCTGGTTGACAATAATTG
GAATGTTAAGGTTTGTGACTTTGGACTTTCGCGGTTGAAGCACAGTACATTTTTGTCATC
CAAATCTACAGCTGGAACACCTGAGTGGATGGCACCTGAGGTTCTGCGGAATGAACAATC
GAATGAAAAGTGTGATGTTTATAGCTTTGGTGTCATCTTATGGGAACTGGCAACACTTAG
AATGCCATGGAGTGGGATGAATCCAATGCAAGTTGTGGGGGCAGTTGGTTTCCAGGATAG
ACGGCTTGATATTCCCAAGGAAGTTGATCCTCTGGTCGCAAGGATAATATTTGAATGCTG
GCAGAAGGATCCAAATTTGCGCCCGTCATTTGCACAGTTAACAAGTGCCCTGAAGACTGT
TCAAAGACTAGTGACCCTTTGTCACCAGGAGAACCAGAGCCCCCATGTTCAACAAGAAAT
CTCAGTGCATTTGACTCCTTAGTGGGGCTTTCCACTTTGCGTTGTGCATAGTTTTTTGTT
CTGCTGCTGTTTGTGTTTGTCAAAAAGTCGGCAAATGCACCTTGTAGATTGAGCGTCCGA
GGTGGTAGACACTTTGCTGCCGCGACAAGGACCCCAAAGGTAGGGTATGTATAGAGTCGC
CCATCAAACAGCAATCGGATCAGTGTGTAGCAACTCATTGTTATGCCCTCGTCAATACCT
GGCCAACCGGGTGCGAGCCCTCTGGAAAAGCAGTGAGAGCTCTGTGTTCATTGTGAATTT
GCCTGGCTATGCTAAGTGGATTTTCTGTCTTGCTGCGCAACAGACAGCATATTTGCAAGT
TGGAAGTGCTGTAACTCTGTACAATCAGAACACGTGAATTTGCCGCGCTATCTAGCTTTG
TTGTT