Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d048424_T019
CDS Infomation

cds chromosome:B73_RefGen_v4:9:155994370:155999070:-1 gene:Zm00001d048424 gene_biotype:protein_coding transcript_biotype:protein_coding description:evolutionarily conserved C-terminal region 2
Sequence

ATGGCCGCCGTCGCGACGCCACCGGCACCGGCACCGGCACCGGCTGCTGCTCCGGCTCCC
GTCACCGTCGCCCCTGCCGCGGACCAAACCACGGATCTGCTGCAGAAGTTGTCGCTGGAT
TCGCAGCCCAAGGCGGCGGGTGCGACAGAGCCTGCTGCTGCTGCCGCCAAGCAGGAGGGT
GCTGTGACAAGCCAGCCGCTGAGTGTGGCCATCCCGCCGGAGCGGTCTATCACGCCGGTG
CTTCAGGACTTTATGGATCCCAACCTGTTCTATCTACCAGCGTATTACTATGGAGGCTAC
GACAGTTCCATGAGCGAGTGGGATGATTATCCAAGATATCTAAATTCAGATGGAGTGGAG
ATTGCCCCAGCAGTGTATGGAGATATTTATGGATATGGGTATGCTCCTTACGGGGCATAC
TCTCCGGCCACTTCCCCAGTTCCAACGGTTGATGGTCAGATGTTTGGCGCACAGCATTAC
CAGTATCCAACCACGTATTTTCAGCCTCCTACACCAATTCCTTCTACCACTCAAAGCAAC
CTCCAGTCTTCCAACAATCCTGAAAAGCCAGCAGCTAAAGCAGATCCTGCCAAGGCAACC
GCTAATGGTGTTCCAAATGGTACTGGTCACACTCACAGTTACAGTGGAACTGTACCAAGC
CAACAAAGTTCAGCACTGACGCCTGATGGAACTTATAGGGCGCCCTTGCTAGGTGGAGTT
CCTTCTGCTGGTTACCTAGACACGACATATTATGGGTATGACAGCACAGGGGCACAATTT
GCATGGTATGATGGCTCTGCTTATGCAAATGGACAGCAAAGAACAACCACAACTAATCGT
TTTCCATCCTCGTCATTCAGTGGTAATGGTTCATCTGCAATATATCAGAACAAGAGCTCC
ACCACGCAGCAGATGGGTATGCAGAATAGAAGACCTACAACTACATCAGCAGCTCCTACC
TATCCCAATAGGATGTACCCTAGCCCCCGACCGTACACCCAGTATGGGAATTCAGTAAAA
ACTGGTCTTCCCTACGGGAGTAACGGTTATGATTCCAGGATATATGGTCGATGTGGTCTT
GGTAATGGTATGGATAACAGGTACAGGCCCAGGGCATGTAGTGGATACTATGGTTATGGC
AATGAGAGTCAGGATGGAACAATTGAGTTAAACAGAGGTCCTAGATCTGGCCGGTTCAAG
AACCAGAAATTGTACGGTCATACTGTCACTATTGCTGTGAAAGGGCAGTCTCTCCCTTCT
AGTGAAAGCAAGAATGATAGTGCTGTGCCTGATAGAGCAAAGTACAATAGAGATGACTTC
CCTGTTCAGTACGATGCTGCAAAGTTCTTTGTCATTAAATCGTACAGCGAGGATGACATC
CACAAGAGCGTAAAATACAATGTGTGGGCAAGCACAACCAACGGAAACAAGAAGCTTGAT
GCTGCTTACCAAGAAGCTCAGTCAAAGGGATCTGCATGCCCTATATTCTTGTTCTTCTCA
GTGAATACAAGTGGGCAGTTTGTTGGTGTTGCTGAAATGACTGGCGCCGTTGATTTTGAG
AAAACCCTAGAGTATTGGCAACAGGACAAGTGGAACGGCTCCTTCTCTGTTAAGTGGCAC
ATTGTGAAGGACGTGCCCAACAATATTCTCAAGCACATCATCCTGGAGAACAATGAGAAC
AAGCCTGTCACAAACAGCCGCGACACTCAGGAGATACGCCTCGAACAAGGCCTTCAGATG
CTCAAGATATTCAAGGATCATGTCAGCAAGACTTCCATCCTCGACGACTTTGCCTTCTAC
GAGAGCCGCCAGAAGTTGATGCAGGATAAGAGGTCGAAACAGCAGCAGCTCCAAAAGCAG
GTCTGGGACACTAGGACCCCCGTTTCTGTCACCGGTGAGCGACCGCAGGAACCTGCTAAT
GGGAAGCCCAATCCGTCCGTACCAGATGGTGTCACGGCAGAGGTGAAGGCGGTGAAGGCT
CCCGCAGAGAACGGCATCACTGCTCCTGTTGTTTCCTATGCAGCAAAGGTGGCCCAGACA
GCACCAGAGAAACCCGTCCTCTCCAACGGAGTCGCCAAGACCGGTTAA

Peptide Sequence

PEP ID

Zm00001d048424_P019
PEP Infomation

pep chromosome:B73_RefGen_v4:9:155994370:155999070:-1 gene:Zm00001d048424 transcript:Zm00001d048424_T019 gene_biotype:protein_coding transcript_biotype:protein_coding description:evolutionarily conserved C-terminal region 2
Sequence

MAAVATPPAPAPAPAAAPAPVTVAPAADQTTDLLQKLSLDSQPKAAGATEPAAAAAKQEG
AVTSQPLSVAIPPERSITPVLQDFMDPNLFYLPAYYYGGYDSSMSEWDDYPRYLNSDGVE
IAPAVYGDIYGYGYAPYGAYSPATSPVPTVDGQMFGAQHYQYPTTYFQPPTPIPSTTQSN
LQSSNNPEKPAAKADPAKATANGVPNGTGHTHSYSGTVPSQQSSALTPDGTYRAPLLGGV
PSAGYLDTTYYGYDSTGAQFAWYDGSAYANGQQRTTTTNRFPSSSFSGNGSSAIYQNKSS
TTQQMGMQNRRPTTTSAAPTYPNRMYPSPRPYTQYGNSVKTGLPYGSNGYDSRIYGRCGL
GNGMDNRYRPRACSGYYGYGNESQDGTIELNRGPRSGRFKNQKLYGHTVTIAVKGQSLPS
SESKNDSAVPDRAKYNRDDFPVQYDAAKFFVIKSYSEDDIHKSVKYNVWASTTNGNKKLD
AAYQEAQSKGSACPIFLFFSVNTSGQFVGVAEMTGAVDFEKTLEYWQQDKWNGSFSVKWH
IVKDVPNNILKHIILENNENKPVTNSRDTQEIRLEQGLQMLKIFKDHVSKTSILDDFAFY
ESRQKLMQDKRSKQQQLQKQVWDTRTPVSVTGERPQEPANGKPNPSVPDGVTAEVKAVKA
PAENGITAPVVSYAAKVAQTAPEKPVLSNGVAKTG

Transcript Sequence

Transcript ID

Zm00001d048424_T019
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:155994370:155999070:-1 gene:Zm00001d048424 gene_biotype:protein_coding transcript_biotype:protein_coding description:evolutionarily conserved C-terminal region 2
Sequence

GGAATCCAAAGCAGACGGCCAGACGCCGTGCCGAGCCGAGCAGTCCAACTCCCGGGCAGA
GGCAGAGGCAGAGGCGGAGGGCGGGGCGAGAGAGCCGTGCGGCTGTCCAACTCCCCTTCC
CTATCCGGTAGCAGCTGCTCCTATATGACCCCCGCACCCCAGCAAAAACCTTCCCCTTTT
TCCCCTTCACAGCCCCGTACTACTATCCCCGCTACCGCTAGCCGCCGCGCTGCTCATCTG
GTGGCGGCTCGCCTCCCTCCCCCCATCCGCCGCCGCCGGCTCCTCCTCTAGCTCCCTCCT
TACCCCGAGCTTTAAGCTCGTGCTACCTGCCTACCTATCCGTAGGGAGAGAGAGAGAGAG
GGGAGAAGGTTCGGTCGGTCGGTCGGGGGCTCTCGGATCTCGCCGCTGCCTCCCCGTTTC
TTCGTTGGGATCTCGCTCGCTTCGCGCCATGGCCGCCGTCGCGACGCCACCGGCACCGGC
ACCGGCACCGGCTGCTGCTCCGGCTCCCGTCACCGTCGCCCCTGCCGCGGACCAAACCAC
GGATCTGCTGCAGAAGTTGTCGCTGGATTCGCAGCCCAAGGCGGCGGGTGCGACAGAGCC
TGCTGCTGCTGCCGCCAAGCAGGAGGGTGCTGTGACAAGCCAGCCGCTGAGTGTGGCCAT
CCCGCCGGAGCGGTCTATCACGCCGGTGCTTCAGGACTTTATGGATCCCAACCTGTTCTA
TCTACCAGCGTATTACTATGGAGGCTACGACAGTTCCATGAGCGAGTGGGATGATTATCC
AAGATATCTAAATTCAGATGGAGTGGAGATTGCCCCAGCAGTGTATGGAGATATTTATGG
ATATGGGTATGCTCCTTACGGGGCATACTCTCCGGCCACTTCCCCAGTTCCAACGGTTGA
TGGTCAGATGTTTGGCGCACAGCATTACCAGTATCCAACCACGTATTTTCAGCCTCCTAC
ACCAATTCCTTCTACCACTCAAAGCAACCTCCAGTCTTCCAACAATCCTGAAAAGCCAGC
AGCTAAAGCAGATCCTGCCAAGGCAACCGCTAATGGTGTTCCAAATGGTACTGGTCACAC
TCACAGTTACAGTGGAACTGTACCAAGCCAACAAAGTTCAGCACTGACGCCTGATGGAAC
TTATAGGGCGCCCTTGCTAGGTGGAGTTCCTTCTGCTGGTTACCTAGACACGACATATTA
TGGGTATGACAGCACAGGGGCACAATTTGCATGGTATGATGGCTCTGCTTATGCAAATGG
ACAGCAAAGAACAACCACAACTAATCGTTTTCCATCCTCGTCATTCAGTGGTAATGGTTC
ATCTGCAATATATCAGAACAAGAGCTCCACCACGCAGCAGATGGGTATGCAGAATAGAAG
ACCTACAACTACATCAGCAGCTCCTACCTATCCCAATAGGATGTACCCTAGCCCCCGACC
GTACACCCAGTATGGGAATTCAGTAAAAACTGGTCTTCCCTACGGGAGTAACGGTTATGA
TTCCAGGATATATGGTCGATGTGGTCTTGGTAATGGTATGGATAACAGGTACAGGCCCAG
GGCATGTAGTGGATACTATGGTTATGGCAATGAGAGTCAGGATGGAACAATTGAGTTAAA
CAGAGGTCCTAGATCTGGCCGGTTCAAGAACCAGAAATTGTACGGTCATACTGTCACTAT
TGCTGTGAAAGGGCAGTCTCTCCCTTCTAGTGAAAGCAAGAATGATAGTGCTGTGCCTGA
TAGAGCAAAGTACAATAGAGATGACTTCCCTGTTCAGTACGATGCTGCAAAGTTCTTTGT
CATTAAATCGTACAGCGAGGATGACATCCACAAGAGCGTAAAATACAATGTGTGGGCAAG
CACAACCAACGGAAACAAGAAGCTTGATGCTGCTTACCAAGAAGCTCAGTCAAAGGGATC
TGCATGCCCTATATTCTTGTTCTTCTCAGTGAATACAAGTGGGCAGTTTGTTGGTGTTGC
TGAAATGACTGGCGCCGTTGATTTTGAGAAAACCCTAGAGTATTGGCAACAGGACAAGTG
GAACGGCTCCTTCTCTGTTAAGTGGCACATTGTGAAGGACGTGCCCAACAATATTCTCAA
GCACATCATCCTGGAGAACAATGAGAACAAGCCTGTCACAAACAGCCGCGACACTCAGGA
GATACGCCTCGAACAAGGCCTTCAGATGCTCAAGATATTCAAGGATCATGTCAGCAAGAC
TTCCATCCTCGACGACTTTGCCTTCTACGAGAGCCGCCAGAAGTTGATGCAGGATAAGAG
GTCGAAACAGCAGCAGCTCCAAAAGCAGGTCTGGGACACTAGGACCCCCGTTTCTGTCAC
CGGTGAGCGACCGCAGGAACCTGCTAATGGGAAGCCCAATCCGTCCGTACCAGATGGTGT
CACGGCAGAGGTGAAGGCGGTGAAGGCTCCCGCAGAGAACGGCATCACTGCTCCTGTTGT
TTCCTATGCAGCAAAGGTGGCCCAGACAGCACCAGAGAAACCCGTCCTCTCCAACGGAGT
CGCCAAGACCGGTTAACTCGATCGTGCAACCAGAGCTCCATAGCCAG