Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d048358_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:9:154915585:154923498:-1 gene:Zm00001d048358 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:aconitase3 description: aconitase3
Sequence

ATGGTTGAGTCCTACCTGCGTGCGAATAAGATGTTCGTTGATCACAGCCAGGCTGAAGCT
GAAAGAGTATATTCTTCTTATCTAGAACTGAACCTGGAAGAGGTAGAACCATGTCTATCG
GGACCAAAACGGCCTCACGATCGAGTGACATTGAAGAATATGAAGTCTGACTGGCTTTCT
TGCTTGGATAGCGATGTAGGATTCAAGGGTTTTGCTGTCCCCAAAGAGTCACAAGGCAAA
GTTGCAGAATTTTTGTTCCACGGGACTCCTGCAAAGATAAAGCATGGTGATGTTGTAATT
GCAGCAATAACCAGTTGCACAAACACATCAAATCCTAATGTAATGCTGGGAGCTGCTTTG
GTTGCCAAGAAGGCTTGTGAGTTAGGCCTGGAGGTAAAGCCATGGATTAAGACGAGCCTT
GCACCTGGTTCTGGTGTTGTGAAGCAGTACTTGGATAAGAGCGGGTTGCAGAAATATCTT
GACCAGCTTGGCTTCAATATTGTTGGCTATGGTTGCACAACCTGCATTGGAAATTCCGGG
GAGCTTGATGAATCCGTATCTGCTGCAATTACTGAGAATGATATTGTTTCTGCTGCTGTA
TTGTCCGGAAACAGGAATTTTGAAGGACGTGTGCATCCCTTAACTAGAGCAAATTACCTT
GCTTCCCCTCCATTAGTTGTTGCTTATGCCTTGGCTGGCACGGTTAATATTGATTTTGAG
AAAGAACCTATTGGAATCTCGAAAGATGGGAAAGAGGTTTACTTCCGGGATGTTTGGCCA
TCAACAGAAGAGATAGCCGAGGTTGTCAAGTCAAGTGTGCTTCCTGACATGTTCAAGAGC
ACATATGAGTCCATCACCCAAGGAAATCCTATGTGGAATGAGCTGCCAGTCTCAACAAGC
ACTCTCTATCCCTGGGATCCATCATCTACATACATCCATGAGCCTCCTTACTTCAAGGAT
ATGACAATGACTCCTCCTGGCCCGCGACCAGTGAAGGATGCATATTGCCTTCTGAACTTT
GGTGACAGTATCACAACTGACCACATCTCGCCTGCCGGAAACATTCACCCAGACAGCGCA
GCTGCAACATATCTGAAGGAGCGTGGTGTTGAAAGGAAGGACTTCAACTCATATGGTAGC
CGAAGAGGAAATGATGAGATCATGGCTAGGGGAACCTTTGCCAACATTCGTCTCGTGAAT
AAGTTCTTGAAGGGTGAGGTTGGACCCAAGACAATCCATGTTCCATCTGGGGATAAGCTT
TCAGTTTTTGATGCTGCTATGAAATACAAGAATGAAGGGCATGATACTATTATCCTGGCT
GGTGCCGAGTACGGGAGTGGTAGCTCTCGGGATTGGGCTGCAAAGGGCCCAATGCTTCAG
GGAGTGAAGGCTGTGATAGCAAAGAGCTTTGAGAGGATTCACCGCAGCAATCTTGCTGGC
ATGGGAATCATCCCTCTATGCTTCAAAGCAGGGGAGGATGCAGACACCCTGGGCCTAACC
GGCCATGAGCGCTACACGGTCCACCTTCCAACCAATGTGAGTGAGATAAAGCCTGGCCAA
GATGTTACCGTGACAACTGATAATGGGAAGTCGTTCACTTGCACACTCAGATTCGACACT
GAGGTGGAGCTTGCTTACTACGACCATGGTGGCATTCTACCATATGTCATCAGAAAGATT
GCGGAACAGTAG

Peptide Sequence

PEP ID

Zm00001d048358_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:9:154915585:154923498:-1 gene:Zm00001d048358 transcript:Zm00001d048358_T005 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:aconitase3 description: aconitase3
Sequence

MVESYLRANKMFVDHSQAEAERVYSSYLELNLEEVEPCLSGPKRPHDRVTLKNMKSDWLS
CLDSDVGFKGFAVPKESQGKVAEFLFHGTPAKIKHGDVVIAAITSCTNTSNPNVMLGAAL
VAKKACELGLEVKPWIKTSLAPGSGVVKQYLDKSGLQKYLDQLGFNIVGYGCTTCIGNSG
ELDESVSAAITENDIVSAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVNIDFE
KEPIGISKDGKEVYFRDVWPSTEEIAEVVKSSVLPDMFKSTYESITQGNPMWNELPVSTS
TLYPWDPSSTYIHEPPYFKDMTMTPPGPRPVKDAYCLLNFGDSITTDHISPAGNIHPDSA
AATYLKERGVERKDFNSYGSRRGNDEIMARGTFANIRLVNKFLKGEVGPKTIHVPSGDKL
SVFDAAMKYKNEGHDTIILAGAEYGSGSSRDWAAKGPMLQGVKAVIAKSFERIHRSNLAG
MGIIPLCFKAGEDADTLGLTGHERYTVHLPTNVSEIKPGQDVTVTTDNGKSFTCTLRFDT
EVELAYYDHGGILPYVIRKIAEQ

Transcript Sequence

Transcript ID

Zm00001d048358_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:154915585:154923498:-1 gene:Zm00001d048358 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:aconitase3 description: aconitase3
Sequence

CCACCACTTTTGCCATCGCAACCCCTCGTCCTTTTTTGCACAGCGGCCATGCCTCCCCTC
ACGAGCTCCCTCCTCTCCCGCTCCACCACCGGCGGCTCCTCCGCCCGCGGCGTGGCGGTG
GCCGCAGCGATCTCCAGGCCCGCCGCGGACGCCGCCCCTTCCTCCTCGTCCCCGCCTGCC
CGTCCGACCCCGAGGCCGCGCCCAAGCCCGGCGTCGCCCTTCGCGTCCGGCCTCGCGGGC
CGCCTCTTCGGCGGCCACCGCGCCGCCACCCGCTCCGCGTCGTCTGCGGCCGCCGTCTTC
GAGCGCCGGTTTGCCTCAGCCGCGACCAGGAACTCGTACGATGAAATACTGACGGGCCTC
GGGAGGCCAGGAGGCGGAGAGGAGTTTGGCAAGTACTACAGCCTGCCTGCTCTCTCCGAT
CCGCGGATTGATCGGCTCCCATATTCTATCAGGATTCTTCTCGAGTCGGCGATCAGGAAC
TGCGATGATTTCCAGGTCACCGGGAAGGATGTTGAGAAGATCTTGGACTGGGAGAGAAGT
GCACCGAAGCAAGTTGAAATCCCGTTCAAGCCCGCCCGTGTCCTCCTCCAGGATTTTACT
GGTGTCCCGGCTGTTGTCGACCTTGCGTGCATGAGGGATGCTATGAGCAAACTCGGCAGC
GACCCGAACAAAATTAATCCTCTGGTACCTGTAGACCTTGTTATTGACCATTCAGTACAA
GTCGACGTGGCAAGATCAGCAAATGCTGCTCAGGCAAATATGGAGCTTGAGTTCTATCGT
AACAAGGAACGGTTTGGGTTCTTGAAATGGGGGTCCTCTGCATTCCGCAACATGCTTGTT
GTTCCACCTGGATCTGGCATTGTTCACCAGGTGAATCTTGAATATCTGGCAAGGGTTGTG
TTTAATAATGGTGGGATCCTTTACCCTGACAGCGTCGTAGGCACTGACTCCCACACAACT
ATGATAGATGGTCTTGGAGTTGCTGGGTGGGGAGTTGGTGGTATAGAGGCGGAAGCTGCA
ATGCTTGGCCAGCCAATGAGCATGGTCTTGCCAGGGGTTGTTGGCTTCAAGTTATCAGGC
AAGCTGAGGAATGGAGTTACAGCCACTGACTTGGTTCTAACAGTAACCCAAATGCTTCGG
AAACATGGTGTTGTCGGGAAATTTGTTGAGTTCTATGGGCAAGGCATGAGTGAATTGTCA
CTTGCTGATCGGGCGACCATCGCAAATATGTCTCCCGAATATGGCGCAACTATGGGTTTC
TTCCCAGTTGATGGAAAGACGCTGGACTATTTGAAGCTTACTGGCCGAAGTGATGATACA
GTAAGCTAACTGTAGTGTATATGTTCAATTTGACTCTTGACCACTTAATTCTTTTTTTTT
TCCTGTTTAATTATTAGGTGGCCATGGTTGAGTCCTACCTGCGTGCGAATAAGATGTTCG
TTGATCACAGCCAGGCTGAAGCTGAAAGAGTATATTCTTCTTATCTAGAACTGAACCTGG
AAGAGGTAGAACCATGTCTATCGGGACCAAAACGGCCTCACGATCGAGTGACATTGAAGA
ATATGAAGTCTGACTGGCTTTCTTGCTTGGATAGCGATGTAGGATTCAAGGGTTTTGCTG
TCCCCAAAGAGTCACAAGGCAAAGTTGCAGAATTTTTGTTCCACGGGACTCCTGCAAAGA
TAAAGCATGGTGATGTTGTAATTGCAGCAATAACCAGTTGCACAAACACATCAAATCCTA
ATGTAATGCTGGGAGCTGCTTTGGTTGCCAAGAAGGCTTGTGAGTTAGGCCTGGAGGTAA
AGCCATGGATTAAGACGAGCCTTGCACCTGGTTCTGGTGTTGTGAAGCAGTACTTGGATA
AGAGCGGGTTGCAGAAATATCTTGACCAGCTTGGCTTCAATATTGTTGGCTATGGTTGCA
CAACCTGCATTGGAAATTCCGGGGAGCTTGATGAATCCGTATCTGCTGCAATTACTGAGA
ATGATATTGTTTCTGCTGCTGTATTGTCCGGAAACAGGAATTTTGAAGGACGTGTGCATC
CCTTAACTAGAGCAAATTACCTTGCTTCCCCTCCATTAGTTGTTGCTTATGCCTTGGCTG
GCACGGTTAATATTGATTTTGAGAAAGAACCTATTGGAATCTCGAAAGATGGGAAAGAGG
TTTACTTCCGGGATGTTTGGCCATCAACAGAAGAGATAGCCGAGGTTGTCAAGTCAAGTG
TGCTTCCTGACATGTTCAAGAGCACATATGAGTCCATCACCCAAGGAAATCCTATGTGGA
ATGAGCTGCCAGTCTCAACAAGCACTCTCTATCCCTGGGATCCATCATCTACATACATCC
ATGAGCCTCCTTACTTCAAGGATATGACAATGACTCCTCCTGGCCCGCGACCAGTGAAGG
ATGCATATTGCCTTCTGAACTTTGGTGACAGTATCACAACTGACCACATCTCGCCTGCCG
GAAACATTCACCCAGACAGCGCAGCTGCAACATATCTGAAGGAGCGTGGTGTTGAAAGGA
AGGACTTCAACTCATATGGTAGCCGAAGAGGAAATGATGAGATCATGGCTAGGGGAACCT
TTGCCAACATTCGTCTCGTGAATAAGTTCTTGAAGGGTGAGGTTGGACCCAAGACAATCC
ATGTTCCATCTGGGGATAAGCTTTCAGTTTTTGATGCTGCTATGAAATACAAGAATGAAG
GGCATGATACTATTATCCTGGCTGGTGCCGAGTACGGGAGTGGTAGCTCTCGGGATTGGG
CTGCAAAGGGCCCAATGCTTCAGGGAGTGAAGGCTGTGATAGCAAAGAGCTTTGAGAGGA
TTCACCGCAGCAATCTTGCTGGCATGGGAATCATCCCTCTATGCTTCAAAGCAGGGGAGG
ATGCAGACACCCTGGGCCTAACCGGCCATGAGCGCTACACGGTCCACCTTCCAACCAATG
TGAGTGAGATAAAGCCTGGCCAAGATGTTACCGTGACAACTGATAATGGGAAGTCGTTCA
CTTGCACACTCAGATTCGACACTGAGGTGGAGCTTGCTTACTACGACCATGGTGGCATTC
TACCATATGTCATCAGAAAGATTGCGGAACAGTAGATTGAGATGATTGCGATGCGGTGAA
TCGTAATTGGTGTAAACGACCCATTTTTGAGTACTTATAATAACCTCTGAGTTTCTCAGA
GTGAGCTGTCTGAACTTTTAGTAACCTTTTGCTTTCTTTAAGACACTGTTAATAATATGT
T