Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Zea mays ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d048338_T042
CDS Infomation	cds chromosome:B73_RefGen_v4:9:154684585:154689934:-1 gene:Zm00001d048338 gene_biotype:protein_coding transcript_biotype:protein_coding description:Calcium-binding EF hand family protein
Sequence	ATGGCGGGGACGGAGGCCTTCGAGGCCTACTTCCGCCGCGCGGATTTGGACCAGGACGGC CGCATCAGCGGCCAGGAGGCCGTTGCTTTCTTCCAGGGCGCCAACCTGCCGCAGCAAGTC CTCGCCCAGGTATGGATGCACGCCGATCGGAACAAGACTGGCTTCCTCGGCCGCCCGGAA TTCTTCAACGCGCTGCGCCTGGTCACCGTGGCGCAGAGCGGGCGTCAGCTCACGCCCGAC ATAGTTCAGTCGGCGCTGTATGGTCCCGCCGCTGCTCGAATTCCAGCTCCCAAGATAGCC GCAGGGGCGGTTCCTCCACAAATGGGTGCTGCGGGGGCGCCTAGGCCTCAGGGGAGTGCT GCGATGACGCCCACACCAGGGCAGGTTGGGGCGGCTCAGATGAATCCGGCTGCCACACCA AGGCCCCAGGGAAGCGGTATGGTGCCGACATCTACCCAAGTAAGCGTGCCGCAGGTGAAC CCTGGTGCTGCTCCAAGGCCCCAAGGGATCAATTCTACGATGCCAGCTGCGAGTCAGGGT GGTGCTCTACAAGCAACTCAGTTTGCTGGACCAAGGGTTATGCAGCCACAGCCTTCTAAC TTGGGAATTACGCAACAGCAGCCTTCTAGTACCGGTTTCATGCATCCGCCACAGGTTGGA GCTCCAGCAGCTTCATTACAAGCTCAAGCACCTGGAATCAATCAAGGTTTGGTCAGTGGA GGCAGCATGGGAGGATCTGTCGGTTGGCAAGGTTGGCAAGGCGGTAATGCTGCCTCAGTG GGAGGCATTCCACAAGCTATACCAGGAGCTGCTCCTTCACAGGCAGCACAAGGTGGATTT GGCCCAGGTTTACCTAGAACAATAGGTGTGGCGCTGGTACAACAGGTACAAGCAATGTCT CCATCGCCATTGCCTCCGCAGAGCAACAGTGCCGGTTTGCCTCAGGATTCAAAAGCTTTG GTAATGTCTGGAAATGGCCCTGCCATCAGTTCTGGATCAAGCACAGACATCTTCTCTGCA CTTACACAGCAGAAGCCAAGCATATCTGCACCTGCACCTCAGACAAGCTCGATTCCGAGC TCATCCAGTTTTATGCCCACGCCAACTGGCTCCCAGAACCTGACTAATCTCACACAGTTT GGTTCTTTGCAAGGTAGCAGCCAACGTCAACAGACTCAGCCTGTTGTAAAGCCCAGTCCT GCTCCAGCTGCACCTGTTGTCTCTGCTGGGATTTCTAATCCATCTCCCCAATGGCCAAAA ATTACTCAGTCTGACATCCAGAAGTACATGAAAGTCTTTGGCGATGTTGACAGGGATAGA GATGGCAAAATAACTGGCGCAGAAGCTCGCACTCTGTTCCTCAGTTGGAGGCTTCCAAGA GAGGTCCTGAAGCAAGTATGGGATTTGTCTGACCAAGACAATGATGGCATGCTTTCTTTG AGAGAGTTTTGCGTTGCTCTTTATTTAATGGAGAGGCACCGAGCTGGAACTCCTCTGCCC CCAGCACTTCCTGACTCTCTTAGGCATGATGAGACACTGTTACGAGCTACAGGCTTGCCT TCAACAGCATACAATGGGCCATCATGGCAACAGAATCAAGGAGGATTATCACAAAGAGGC CCTGGAGCACCTGGGGTGCCTGCTGGTGGTGTGCGGCCACCCTTGCCACCACATTTGCAT TCACAAACTGATGGGGCTAGCAGACCAGGGCAGCCAAGATCTTACATGTCTGGGATGGAT AATCATGTGGTAGTTCAAGGAAACAAAGATGACAAAAGTGGAGTGAACCAGTCTGTGCAG GAGGTGGCGGATCCTAAGAAGGTTGAGGTGGAGAAGCAGGTCCTGGATTCCAGAGAGAAG CTGGAGTATTACCGCACAAAGATGCAAGATCTTGTTCTGTATAAAAGTCGGTGCGACAAT AGGCTGAATGAGATTACAGAAAGGGCGTCCTCTGATAAACGCGAGGTACAGAACACTGCT CATTACACGATGTATACCATCATTATAGGTGACTAG

Peptide Sequence

PEP ID	Zm00001d048338_P042
PEP Infomation	pep chromosome:B73_RefGen_v4:9:154684585:154689934:-1 gene:Zm00001d048338 transcript:Zm00001d048338_T042 gene_biotype:protein_coding transcript_biotype:protein_coding description:Calcium-binding EF hand family protein
Sequence	MAGTEAFEAYFRRADLDQDGRISGQEAVAFFQGANLPQQVLAQVWMHADRNKTGFLGRPE FFNALRLVTVAQSGRQLTPDIVQSALYGPAAARIPAPKIAAGAVPPQMGAAGAPRPQGSA AMTPTPGQVGAAQMNPAATPRPQGSGMVPTSTQVSVPQVNPGAAPRPQGINSTMPAASQG GALQATQFAGPRVMQPQPSNLGITQQQPSSTGFMHPPQVGAPAASLQAQAPGINQGLVSG GSMGGSVGWQGWQGGNAASVGGIPQAIPGAAPSQAAQGGFGPGLPRTIGVALVQQVQAMS PSPLPPQSNSAGLPQDSKALVMSGNGPAISSGSSTDIFSALTQQKPSISAPAPQTSSIPS SSSFMPTPTGSQNLTNLTQFGSLQGSSQRQQTQPVVKPSPAPAAPVVSAGISNPSPQWPK ITQSDIQKYMKVFGDVDRDRDGKITGAEARTLFLSWRLPREVLKQVWDLSDQDNDGMLSL REFCVALYLMERHRAGTPLPPALPDSLRHDETLLRATGLPSTAYNGPSWQQNQGGLSQRG PGAPGVPAGGVRPPLPPHLHSQTDGASRPGQPRSYMSGMDNHVVVQGNKDDKSGVNQSVQ EVADPKKVEVEKQVLDSREKLEYYRTKMQDLVLYKSRCDNRLNEITERASSDKREVQNTA HYTMYTIIIGD

Transcript Sequence

Transcript ID	Zm00001d048338_T042
Transcript Infomation	cdna chromosome:B73_RefGen_v4:9:154684585:154689934:-1 gene:Zm00001d048338 gene_biotype:protein_coding transcript_biotype:protein_coding description:Calcium-binding EF hand family protein
Sequence	GCAGCCTCGCCGCGACACGCTCCCCAGAGATCTCCCCCGCCCGACTTGTCAGATCCAGCA ATCCGCATCACCGCCGCCGTGATCTCCCTCTTAGATCCCGGAGATGGCGGGGACGGAGGC CTTCGAGGCCTACTTCCGCCGCGCGGATTTGGACCAGGACGGCCGCATCAGCGGCCAGGA GGCCGTTGCTTTCTTCCAGGGCGCCAACCTGCCGCAGCAAGTCCTCGCCCAGGTATGGAT GCACGCCGATCGGAACAAGACTGGCTTCCTCGGCCGCCCGGAATTCTTCAACGCGCTGCG CCTGGTCACCGTGGCGCAGAGCGGGCGTCAGCTCACGCCCGACATAGTTCAGTCGGCGCT GTATGGTCCCGCCGCTGCTCGAATTCCAGCTCCCAAGATAGCCGCAGGGGCGGTTCCTCC ACAAATGGGTGCTGCGGGGGCGCCTAGGCCTCAGGGGAGTGCTGCGATGACGCCCACACC AGGGCAGGTTGGGGCGGCTCAGATGAATCCGGCTGCCACACCAAGGCCCCAGGGAAGCGG TATGGTGCCGACATCTACCCAAGTAAGCGTGCCGCAGGTGAACCCTGGTGCTGCTCCAAG GCCCCAAGGGATCAATTCTACGATGCCAGCTGCGAGTCAGGGTGGTGCTCTACAAGCAAC TCAGTTTGCTGGACCAAGGGTTATGCAGCCACAGCCTTCTAACTTGGGAATTACGCAACA GCAGCCTTCTAGTACCGGTTTCATGCATCCGCCACAGGTTGGAGCTCCAGCAGCTTCATT ACAAGCTCAAGCACCTGGAATCAATCAAGGTTTGGTCAGTGGAGGCAGCATGGGAGGATC TGTCGGTTGGCAAGGTTGGCAAGGCGGTAATGCTGCCTCAGTGGGAGGCATTCCACAAGC TATACCAGGAGCTGCTCCTTCACAGGCAGCACAAGGTGGATTTGGCCCAGGTTTACCTAG AACAATAGGTGTGGCGCTGGTACAACAGGTACAAGCAATGTCTCCATCGCCATTGCCTCC GCAGAGCAACAGTGCCGGTTTGCCTCAGGATTCAAAAGCTTTGGTAATGTCTGGAAATGG CCCTGCCATCAGTTCTGGATCAAGCACAGACATCTTCTCTGCACTTACACAGCAGAAGCC AAGCATATCTGCACCTGCACCTCAGACAAGCTCGATTCCGAGCTCATCCAGTTTTATGCC CACGCCAACTGGCTCCCAGAACCTGACTAATCTCACACAGTTTGGTTCTTTGCAAGGTAG CAGCCAACGTCAACAGACTCAGCCTGTTGTAAAGCCCAGTCCTGCTCCAGCTGCACCTGT TGTCTCTGCTGGGATTTCTAATCCATCTCCCCAATGGCCAAAAATTACTCAGTCTGACAT CCAGAAGTACATGAAAGTCTTTGGCGATGTTGACAGGGATAGAGATGGCAAAATAACTGG CGCAGAAGCTCGCACTCTGTTCCTCAGTTGGAGGCTTCCAAGAGAGGTCCTGAAGCAAGT ATGGGATTTGTCTGACCAAGACAATGATGGCATGCTTTCTTTGAGAGAGTTTTGCGTTGC TCTTTATTTAATGGAGAGGCACCGAGCTGGAACTCCTCTGCCCCCAGCACTTCCTGACTC TCTTAGGCATGATGAGACACTGTTACGAGCTACAGGCTTGCCTTCAACAGCATACAATGG GCCATCATGGCAACAGAATCAAGGAGGATTATCACAAAGAGGCCCTGGAGCACCTGGGGT GCCTGCTGGTGGTGTGCGGCCACCCTTGCCACCACATTTGCATTCACAAACTGATGGGGC TAGCAGACCAGGGCAGCCAAGATCTTACATGTCTGGGATGGATAATCATGTGGTAGTTCA AGGAAACAAAGATGACAAAAGTGGAGTGAACCAGTCTGTGCAGGAGGTGGCGGATCCTAA GAAGGTTGAGGTGGAGAAGCAGGTCCTGGATTCCAGAGAGAAGCTGGAGTATTACCGCAC AAAGATGCAAGATCTTGTTCTGTATAAAAGTCGGTGCGACAATAGGCTGAATGAGATTAC AGAAAGGGCGTCCTCTGATAAACGCGAGGTACAGAACACTGCTCATTACACGATGTATAC CATCATTATAGGTGACTAGTTGTTCCTTTTGATCTGTTGTTTGATGATAAATCCTCATAG ACACACTGTTATGACTGGAAAAGTATATGGGCGCCGGCCTAAGCAGCCAGGAAGATAAGC TAGACTGAGCAGATAAGTACTCAGATAAGATAGCTAGAGTTGTTTAGATTTTCCTTAAAT AAAGGTAGTTTGTTTAGATCCCCTTAAAAGGAGGAAGTCTTGTTAGGCCAGGGCAATATA TAAGCCCTCTATGCATTTAGTTTGTAATCAGGAAAGATTAATCAAAGAAAGAGATTGAGT