Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d048258_T029
CDS Infomation

cds chromosome:B73_RefGen_v4:9:153366820:153375594:-1 gene:Zm00001d048258 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phosphoinositide phosphatase SAC2
Sequence

ATGGCTTCTGCTGTACAGCATAGAGGATCGATACCTCTTGTCTGGTTTCAGGAAACTTCA
AGACTTAATATTAGACCAGATATTATATTGAAACCTGATGTGGACTACAAGGCGACTCGC
CTTCATTTTGAGAACCTTGCACTTAGATATGGGAATCCAGTAATCATCTTGAACTTAATA
AAGACCCGTGAGAAGAAGCCCCGTGAATCTCTGCTCCGTGCAGAATTTGCAAAGGCTATC
CATTACATTAACAAGAGCCTGCCTGATGACAAGCGTCTAAAATTTTTACACATGGATCTG
AGTAAGCTTTCTCGAAGGAAAGGCACCAATGTGCTTGCACTGTTGACCAAGGTGGCATCA
GATGTGTTGGATCTAACTGAATTCCTCCACTGTGAAATAAGTACATCAACAAAACCTGAT
GACACCTCAAGTGGAGAAAGAACTGCTGCCAAACCACATGATGACAGAAGTAGCAGTGAT
CAAACTGAATGTGCAGCTAAGTTGGCACCTCTTTTATTACAGAAGGGTGTCCTCAGGACA
AATTGCATAGACTGCTTAGATCGCACAAATGTTGCACAATTTGCATATGGTTTAGCTGCT
TTAGGGCGTCAACTTCATGCATTGGGGCTTACTGAAGCACAGAAAATTGAATTGCACGAT
CCTCTGGCTGATGATCTGATGGACTTCTATGAATGGATGGGTGATACATTAGCTATTCAG
TATGGTGGTTCTGCTGCTCACAACAAGATCTTCTGCGAGCAAAGGGGTCAATGGAAGGCA
GCAACCCAATCTCAGGAGTTCCTTCGGACCATTCAACGCTACTATAATAACGCCTACACT
GATCACGACAAGCAGGATGCTATAAACATGTTCTTAGGTCATTTCCAACCTCAGCAAGGG
AAACCTGCACTGTGGAAGCTGGACTCAGATCAGCATTACAACATTGGGAGGCAAGGGACT
TTAAAAGAAGAGATTGGAAGATCGTTCATAAAGAGGTCACTATCAGATGGTAACATACTG
TTGGAGAACAACTTGCCTGTAACTAGCTGTAACAATGAAACAAACAACACAGAATTGCTT
CCAATGCAACAGCTGGATGATATTAGAGAACCTACCGACTCTGCGCCAGAGATCTCCATA
TGTGAACCTAACCCGTGCTCCAGTGTGAACTACGGCAGAGTGCCTGGAAGACACTCTATT
TCAGAAGAGCGGCAGAGTTATTTGAAAAGATTAGGTTACCCTGAATTGCATTCTTCAAAT
TTCCTCGACCTTGATTTGTTGTCGTCTTCTGGGAATTCCTGTGACGAGGAAGTTTTTGAG
AGGTCATCACTGATCAATTCACCTATGGATGTGGTCAGCGTTGAATCATCTACGTCGTAC
AGTGAACAAGGACACACTGATGAGGGAAGGGATGACATGGATCTTTCCCGTTCAAGCAGC
CAGGTCTCAGACGTTCGGGACTATTCTGACCGGTTTGCGCACTGGGTCGCGGATGGAGGC
ATGCTTTGGTAA

Peptide Sequence

PEP ID

Zm00001d048258_P029
PEP Infomation

pep chromosome:B73_RefGen_v4:9:153366820:153375594:-1 gene:Zm00001d048258 transcript:Zm00001d048258_T029 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phosphoinositide phosphatase SAC2
Sequence

MASAVQHRGSIPLVWFQETSRLNIRPDIILKPDVDYKATRLHFENLALRYGNPVIILNLI
KTREKKPRESLLRAEFAKAIHYINKSLPDDKRLKFLHMDLSKLSRRKGTNVLALLTKVAS
DVLDLTEFLHCEISTSTKPDDTSSGERTAAKPHDDRSSSDQTECAAKLAPLLLQKGVLRT
NCIDCLDRTNVAQFAYGLAALGRQLHALGLTEAQKIELHDPLADDLMDFYEWMGDTLAIQ
YGGSAAHNKIFCEQRGQWKAATQSQEFLRTIQRYYNNAYTDHDKQDAINMFLGHFQPQQG
KPALWKLDSDQHYNIGRQGTLKEEIGRSFIKRSLSDGNILLENNLPVTSCNNETNNTELL
PMQQLDDIREPTDSAPEISICEPNPCSSVNYGRVPGRHSISEERQSYLKRLGYPELHSSN
FLDLDLLSSSGNSCDEEVFERSSLINSPMDVVSVESSTSYSEQGHTDEGRDDMDLSRSSS
QVSDVRDYSDRFAHWVADGGMLW

Transcript Sequence

Transcript ID

Zm00001d048258_T029
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:153366820:153375594:-1 gene:Zm00001d048258 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phosphoinositide phosphatase SAC2
Sequence

TCGCTGGGTTGAATTGAATCGATTTAGATCCGTTTATCCCTAGTTCGGGTGCCCGTGTTC
TGGAAGGTGGAAGCTTTGGTTGGGTTTTCTCTTCCAGAGCATTAATGTTTCTGAGGGCCT
AAGATGCTCTATTTGAAGCAGCCCACGAGGAGCTGAGTCTTTGTGTTTTTTTTATCGTTC
TCTCTCGTCGTCTGTTGATCTGATCGGATGGAGGCTATGACGGGTGGCAAATTCCTTCAA
AAGTTTCGACTCTACGAAACCAGATCGAAATTTTATCTTATTGGAAGAGACAAGAGCAGG
ATTCACTGGAGGGTGCTAAAAATTGATCGGTTGGAGTCCACTGAGCTGGGTGTCGATGAG
GATCCAACTATTTACACGGAAAGTGAATGTCAAGAACTGCTTTGGCGGATCCATGAGGGG
AACATGTTGACTGGTGGACTGAAATTTGTCACAAAATGTTACGGAATAGTTGGTTTTGTA
AAGTTTCTTGGTCCTTATTACATGGTTATAATAACCAGTAGAAGGAAAATCGGCACAATA
TGCGGCCATGAAATTTATTCCGTCGGCAAGAGTGAAATGATTGCAATTTCAAGTGTTACA
GTCTGGCCCAACGTGGCTTATTCTAGGGACGAGAACAGATATAAGCGCCTTCTTTGCTCA
GTTGACCTTTCGAAGGATTTCTTCTTCAGCTACTCTTACAACATCATGCGCAGCCTTCAG
AAGAACATAACCCAGAAGAATACTGGGCAGGCTGTTTATGAACCAATGTGTGTATGGAAT
GAATTTCTGACACGAGCAATTCGGAATCATCTCAAGAATACATGTTGGACTGTTGCCTTA
GTCCATGGATTTTTTAAACAGTGAAAGCTTGAAACAAGGTTGGCAAAGGCATGCTTTGTA
TAACCTGCTGATTTTTTTTTCAGTTTGAGCTGCTTGAAGCTTTCTTGAGTTGAAACCTTT
GCTCTCGAAGCTCTCCGTATCTGGGAAGGATTTTTGGTTGACCCTTATAGCTAGGCGCTC
ACGACACTTTGCGGGAACCAGATTCTTGAAACGTGGCGTTAATGAAAAGGGCAGGGTAGC
GAATGATGTTGAGACTGAGCAGATTGTTTTTGAAGACACATCTGATGGAATCCCAACTCA
GATGGCTTCTGCTGTACAGCATAGAGGATCGATACCTCTTGTCTGGTTTCAGGAAACTTC
AAGACTTAATATTAGACCAGATATTATATTGAAACCTGATGTGGACTACAAGGCGACTCG
CCTTCATTTTGAGAACCTTGCACTTAGATATGGGAATCCAGTAATCATCTTGAACTTAAT
AAAGACCCGTGAGAAGAAGCCCCGTGAATCTCTGCTCCGTGCAGAATTTGCAAAGGCTAT
CCATTACATTAACAAGAGCCTGCCTGATGACAAGCGTCTAAAATTTTTACACATGGATCT
GAGTAAGCTTTCTCGAAGGAAAGGCACCAATGTGCTTGCACTGTTGACCAAGGTGGCATC
AGATGTGTTGGATCTAACTGAATTCCTCCACTGTGAAATAAGTACATCAACAAAACCTGA
TGACACCTCAAGTGGAGAAAGAACTGCTGCCAAACCACATGATGACAGAAGTAGCAGTGA
TCAAACTGAATGTGCAGCTAAGTTGGCACCTCTTTTATTACAGAAGGGTGTCCTCAGGAC
AAATTGCATAGACTGCTTAGATCGCACAAATGTTGCACAATTTGCATATGGTTTAGCTGC
TTTAGGGCGTCAACTTCATGCATTGGGGCTTACTGAAGCACAGAAAATTGAATTGCACGA
TCCTCTGGCTGATGATCTGATGGACTTCTATGAATGGATGGGTGATACATTAGCTATTCA
GTATGGTGGTTCTGCTGCTCACAACAAGATCTTCTGCGAGCAAAGGGGTCAATGGAAGGC
AGCAACCCAATCTCAGGAGTTCCTTCGGACCATTCAACGCTACTATAATAACGCCTACAC
TGATCACGACAAGCAGGATGCTATAAACATGTTCTTAGGTCATTTCCAACCTCAGCAAGG
GAAACCTGCACTGTGGAAGCTGGACTCAGATCAGCATTACAACATTGGGAGGCAAGGGAC
TTTAAAAGAAGAGATTGGAAGATCGTTCATAAAGAGGTCACTATCAGATGGTAACATACT
GTTGGAGAACAACTTGCCTGTAACTAGCTGTAACAATGAAACAAACAACACAGAATTGCT
TCCAATGCAACAGCTGGATGATATTAGAGAACCTACCGACTCTGCGCCAGAGATCTCCAT
ATGTGAACCTAACCCGTGCTCCAGTGTGAACTACGGCAGAGTGCCTGGAAGACACTCTAT
TTCAGAAGAGCGGCAGAGTTATTTGAAAAGATTAGGTTACCCTGAATTGCATTCTTCAAA
TTTCCTCGACCTTGATTTGTTGTCGTCTTCTGGGAATTCCTGTGACGAGGAAGTTTTTGA
GAGGTCATCACTGATCAATTCACCTATGGATGTGGTCAGCGTTGAATCATCTACGTCGTA
CAGTGAACAAGGACACACTGATGAGGGAAGGGATGACATGGATCTTTCCCGTTCAAGCAG
CCAGGTCTCAGACGTTCGGGACTATTCTGACCGGTTTGCGCACTGGGTCGCGGATGGAGG
CATGCTTTGGTAAAAGGCCATGGACTTTTGTCTTGCTTGACAACTCGGTAGAATCTGTGA
CCGCAGGAAATGGATGCGAGCAGATGACATGGCT