Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d048243_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:9:153105404:153110619:1 gene:Zm00001d048243 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGTACGAACACCTCCCCGCGTTCCCGATCGCGCCGGCCGCCGTCGGCGACTGCCGCGGC
ATCCCCTTCGACCCTTCCTTTCTCCCGCGCCTCCTCCTCTCCGCCACCTCCTGCACCTCC
CCCTTCCTCGCCGAGCGCGCAGTCTCCGCCCTCCACGCGACCGGTCTCAAGCTCGGCGCG
CTCCCCTCCTCCCTCCCGGCCTCGAACGCCCTCATCTCCGCCTACTCCCAAGCGGACCTC
CTCCCCTCCGCCCTCCGCGTCTTCTCCCTCCTCAGCCACCCCTCCACCGCCTCCTACACC
ACCGTCCTCTCCGCGCTCTCCCGCCACGGCCGTCCCCACGAGGCGATCTCCCTCTTCGCC
ACCTCCGCGTCCGCGGTCGCCCCCGACGCCGAGCTCCTCTCCTGCCTCGTCTCATGCTGC
CGCCGCGCGTCCGCCTTACTCCCCGCGCGCGCGGCGCACGCCTACGGGATCAAGAACGTG
GCGGCGCTGGCCTTCTACGCCTCGGCAGGTCCGGCGCTGGTCGCCTTGTACGCGAGCCGC
GGGAAGGTCGGTGCGGCTAGGAGGGTGTTTGGCTACATGGACGGCTTGGACGTGGTGTCC
TGGAACGCCATGATCGGCGGGTTCGCTAGTGCCGGGATGGACGAGGAGTCGTGGGCCTGC
TTCCGGGAGATGCACTCGAGAGGTGTTCGAGGGAATGCCCGCACAGCTGTGGTGGTGCTG
GGATCTTGTGACATGGAGTCCGGCAGGCAGGTCCATGGGACTATAGTGAGTAGTCATGGT
GGTTCTTCAAACGCCATTTTGTGGAACGCGTTGATGAGCATGTATTCGCGTGCCGGCTGT
GTCACTGATGCAGAGAGGGTGTTCCTGGAGATTGTAAAGAAGGATGTTGTGTCATGGAAT
GTGATGATCGGAGCGTTTGCGAAGAATGGATATGGAGAAAGGGCCCTTGAATTTGTGGAC
ATGGTGTTGCAGTGTGGTATGAAGCCAGACTCTGTGACATTCACGGCCGTTCTCATGGCA
TGCTGCCATTGTGGCTTGGTTGATGAAGGGCTTGTACTATTCCAGCGCTTTGTGTCAGTT
GTTGGGCTCGTTCCAACTATGGAGCAGTGTGCTTGCATTGTGGACTTGCTTGCACGTGCT
GGGAGGTTTCTGGAGGCCTTGGAATTTATCGGCCAGATGTCAGTGAGACCAAATACAGTT
GTCTGGGGTGCTTTGCTGTCTGCAAGTAAGATGCATCACAACGTGGAATTTGCAAAGATT
GCATTTGAACAACTGGTTCAGGTGGAGCCTGAGAATGCTGGGAATTTTGTGACAATGTCA
AACATATATGCAAAGGCTGGGATGGTAGAAGATGCAAAGAGAGTGAGGATGATGATTGAT
AGTGTAGAGTTAGCGAAACCTTCTGGAAAAAGCTGCGTGGAAATTTTGTAG

Peptide Sequence

PEP ID

Zm00001d048243_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:9:153105404:153110619:1 gene:Zm00001d048243 transcript:Zm00001d048243_T001 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MYEHLPAFPIAPAAVGDCRGIPFDPSFLPRLLLSATSCTSPFLAERAVSALHATGLKLGA
LPSSLPASNALISAYSQADLLPSALRVFSLLSHPSTASYTTVLSALSRHGRPHEAISLFA
TSASAVAPDAELLSCLVSCCRRASALLPARAAHAYGIKNVAALAFYASAGPALVALYASR
GKVGAARRVFGYMDGLDVVSWNAMIGGFASAGMDEESWACFREMHSRGVRGNARTAVVVL
GSCDMESGRQVHGTIVSSHGGSSNAILWNALMSMYSRAGCVTDAERVFLEIVKKDVVSWN
VMIGAFAKNGYGERALEFVDMVLQCGMKPDSVTFTAVLMACCHCGLVDEGLVLFQRFVSV
VGLVPTMEQCACIVDLLARAGRFLEALEFIGQMSVRPNTVVWGALLSASKMHHNVEFAKI
AFEQLVQVEPENAGNFVTMSNIYAKAGMVEDAKRVRMMIDSVELAKPSGKSCVEIL

Transcript Sequence

Transcript ID

Zm00001d048243_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:9:153105404:153110619:1 gene:Zm00001d048243 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

AATTGCGAAAATCTCAAATCCGGCTGTTCTCCAACCCCACGGCGGCCCCGGACCGCACCC
AATGTACGAACACCTCCCCGCGTTCCCGATCGCGCCGGCCGCCGTCGGCGACTGCCGCGG
CATCCCCTTCGACCCTTCCTTTCTCCCGCGCCTCCTCCTCTCCGCCACCTCCTGCACCTC
CCCCTTCCTCGCCGAGCGCGCAGTCTCCGCCCTCCACGCGACCGGTCTCAAGCTCGGCGC
GCTCCCCTCCTCCCTCCCGGCCTCGAACGCCCTCATCTCCGCCTACTCCCAAGCGGACCT
CCTCCCCTCCGCCCTCCGCGTCTTCTCCCTCCTCAGCCACCCCTCCACCGCCTCCTACAC
CACCGTCCTCTCCGCGCTCTCCCGCCACGGCCGTCCCCACGAGGCGATCTCCCTCTTCGC
CACCTCCGCGTCCGCGGTCGCCCCCGACGCCGAGCTCCTCTCCTGCCTCGTCTCATGCTG
CCGCCGCGCGTCCGCCTTACTCCCCGCGCGCGCGGCGCACGCCTACGGGATCAAGAACGT
GGCGGCGCTGGCCTTCTACGCCTCGGCAGGTCCGGCGCTGGTCGCCTTGTACGCGAGCCG
CGGGAAGGTCGGTGCGGCTAGGAGGGTGTTTGGCTACATGGACGGCTTGGACGTGGTGTC
CTGGAACGCCATGATCGGCGGGTTCGCTAGTGCCGGGATGGACGAGGAGTCGTGGGCCTG
CTTCCGGGAGATGCACTCGAGAGGTGTTCGAGGGAATGCCCGCACAGCTGTGGTGGTGCT
GGGATCTTGTGACATGGAGTCCGGCAGGCAGGTCCATGGGACTATAGTGAGTAGTCATGG
TGGTTCTTCAAACGCCATTTTGTGGAACGCGTTGATGAGCATGTATTCGCGTGCCGGCTG
TGTCACTGATGCAGAGAGGGTGTTCCTGGAGATTGTAAAGAAGGATGTTGTGTCATGGAA
TGTGATGATCGGAGCGTTTGCGAAGAATGGATATGGAGAAAGGGCCCTTGAATTTGTGGA
CATGGTGTTGCAGTGTGGTATGAAGCCAGACTCTGTGACATTCACGGCCGTTCTCATGGC
ATGCTGCCATTGTGGCTTGGTTGATGAAGGGCTTGTACTATTCCAGCGCTTTGTGTCAGT
TGTTGGGCTCGTTCCAACTATGGAGCAGTGTGCTTGCATTGTGGACTTGCTTGCACGTGC
TGGGAGGTTTCTGGAGGCCTTGGAATTTATCGGCCAGATGTCAGTGAGACCAAATACAGT
TGTCTGGGGTGCTTTGCTGTCTGCAAGTAAGATGCATCACAACGTGGAATTTGCAAAGAT
TGCATTTGAACAACTGGTTCAGGTGGAGCCTGAGAATGCTGGGAATTTTGTGACAATGTC
AAACATATATGCAAAGGCTGGGATGGTAGAAGATGCAAAGAGAGTGAGGATGATGATTGA
TAGTGTAGAGTTAGCGAAACCTTCTGGAAAAAGCTGCGTGGAAATTTTGTAGTAAAGCAT
AAGACTCCATGGACTTGTCAGGGTTTCACATCTTCAAAGAGGAAAGGATTGCAACAGGGC
AAACCAAATCATGCGATTAGTGATATGAAGAGACTTGAAGTGCCTGCATGTTTTGATGCA
ACCAGGAAGCTGACTGAAGATAAATATCAGCAAATGTTACCACAAGAGATATAATAAAAC
TTATCCAGTAACATATACTGATCTCCTTATTATTTCACATGAAATGGTGGCAAAATAAAA
CGTATCCAGGATGAGGATGGAGTCAATTCAAAACTGCTGCTGTTCCCTGCATGCATAACT
CATCTCCCAGCACCCATCCGGTAGAAGTACTGGCGGTATAAACACATCATGACAAAGCTT
TCATGAGAAGATCTTTGACCTTCCGACTAAAGTTGTCTATTTGAATCTGCTCACATTGAG
ATAGTTCTATTTGCAGACAACAAAAGATTGATATGGAGAAAGGGCTCCTTGAACTTGTAG
CCAATGGTTTGTGACTTATAAAGACAATTATGCATCATGGACAAAATTTTATCTAGTTCT
TAGTTTTGATCATTCCTGAATGTTCTTGTTTCTAATGAGAGCTATCTCACTGAGTCACCA
GGTCGTGACTTCAAAGCAATCTCTCCATATTTGCGAGGGAAGACTTTTTTGCCTCATTCT
CTAGACCTCACTCATGTTGGAGCCTCCGACATTGGGTCTGTCCTGCCTCGAATGTTCTTG
TCTTAGAGCCTTCATAGATGAAGGGTATTTATTCAGTGATACAGTAGTGGGGTTCATTAT
CTACACCACTTTGATCAATAAATTAATGTTTTATATTCACATACAAGCTTCTTGTTGTGC
ATGTATCTATTGTTTCTTTTGGTAAAATCAATTGCGACACAAGTCTAGGCTTTGACTGTT
TTGTTGCCCATCCTTATTCTTATCTTCAGCGAAAGGACCTCTAGCCGAGTTGGTTAGATG
GTTCGAGTAACACTCCTTAGCTATTGAGTTCGAATCCTAGTAAGAGCGAATTTCAGGTTG
AGATTAAAAAAGATCACTCGTTAGTTCTCTGGTCGTGTGCACACGAGATGGACTAACTTA
TGGGGACGGATCCTCGTGTAGGGGCTAGGAGGGCTCAAAGCACGAGTAAAGATCTGACAT
ATAGGGGGCGGACCCTTATATTGCACGAGGGACCAGCTTTCGTGACCTTTATCGGTCGGG
GCTCCGATTGAGCTTTTTCTTCATTTAATACCGTGGGGACGGTCTTTCCCCTACCGGCCG
AGTTTTTGATTCTTATCTTCAATGTTTCTTCTTCAGTTAGTAACAAATTTGTTGAGTTGC
GGCTTGAAAGGATGGCAGACAAGAAGATCAAAGGGACTGATTCATCTCGCATTATCTCTT
CCACAAAATATTTGCAAAGTTCAGTAGGGCCTAAGCTAATTGAAGGTACTAATGAAGATG
ATCTCAATAACCTCCAGAAAACAGTAAGTCACAGTGCCAATTTTGTGGCATCGATGCAGC
AAGAACATCCTATAAGCCTTGTATTGACTGAAAACAAAAGCAATTTGCAAGAAATTTTAG
TTGAACAGAAGATTCCTACAGGTGTTTCTATTAATCTTTCACCAAAAATGGATAGCAGTG
AAGTGCCATGCAAGGCTTATAGCAGTGAAGTAGATGATCCAAACACAATGAAATCAAACA
CATCTAGTTGCATGTTTGAGGCATCAAAGCAGCAAGAATGCCCTATAAGCCTCAGTTTGC
TTGACAAGAAACACGATTTGCAAGAAGTTTATGTTGAACAGAATGTTCCTTGTGGTGATT
ATGTTGCCCTTTCACCAAAAGCAGACAGTAGGGAATTAACATCAGCCAATGAGGTTCCTG
ATGGTTTTTTAACTTTCTCTAGAAAGGCTTATGAATCAAAGGAAGCCCAAGATGATTATA
TCACATTGGAAGCTTCAGAAGTAAATATATGTGCAGCTTCACACTCCATGCTTAGGTTAA
TTTTAGGGGTCCAGGTTGAGGCTTCTTGATTGATTCTGGTAAGGTTACTTATGAAACACC
ACCTGCCATCATGAAAAGGGTGAAAGAAGATAGACCACTGATCGCCTACAGATTTCATAA
GCGCCAAATGAGCCTAGGAGACACACGGCACTGAGCAGATCATAACACCAGCAAGTACTT
AAGAATGCATAAAACCATTGTTCATACTACGACTCTCACTGAATCAGTAAAGGTTACTGC
TTCAAAGTTGGGTGACAACATCAACTAGAAAACTCACAGGACACAGGCAGCAAAGGTAAC
TTAGAACTGCTATCCCGTCCTTATAAATACTTGCTCTGGGACATAGACTCATTTGTTTCT
ATAAGCAGGAGAGTGACCATATATTGCTTGGGTTTGATAAGCTAAAGAACGAAATTTCAT
AATGTAAACATCAAACTGACTTTGCAAAATTATCAGTATTAAATGAGCTGCAGAGAACAA
AGAAAGATTCTCGAGATGGAGCCCGCTAAAAACTGTAGATGGAAAAGCTTCCGCAAGATG
ATGTGGTGCGGTGGTGCCAAGTGCTGCTATTAATTATGCAGTAAAGGGGATTAGGTATTC
ACAATTGTGGTTTTGTGGTGATTTCATGGATATTTAATAGTGTGTCACATCAAAATTTTT
AATCATGGTATAACCTTTAAGATGATTGAGTTTTATGAGATAAAATTATTTTTATAGGGA
TGAAACCATGTTAACTCGTTTCCAAGGTCTTAGAAACAGTATGAAACCTCTATTAAAAGT
GATTTGTTTTATCTTCACACATCTTACTAATTTCAATTAGCTATTGAGTTGTAACATTTA
ATTGATATGTTAGCCTATACAATATTCTTAGTGAAATATTATATTGAGAGACATTGTTTT
ATTCATAACGTTTTTAATGATGTAGCAGCGTTGGAAAGAGTGCTATGAAATTCTTATTGT
AAATAGCCTTTAGGACAGGACCACAGGAGCAGTTCAGCACATGCTACCACACTCACTGGT
ACTGTTTTGATCTCCTGATTGCTTCACGAGAAATGAAGGCAAAACAAAGCTTCTCAAGAT
GGAGTCCACTGAAAACTGTAGATGGAATGTTTTTTTAAAGGAACTGTAAATGGAAAAGCT
TCCGCAAGATGATGTGGTAGTTTCAGGGAAAGATGCTGTTGGGGACCTTTGGCGTCCGAA
GGTCCTCAAAAACAGGATTTAACAGTATTTCTGCAGTACAATGTGTGAACAGGTATCCTC
GGACTAAAGTCGGCATTGCAATAGACCGGAATAATACGAAGGTTGACACAGAGCCGAAGG
TGCGAGCAGGAAAGCTTCGGCGCGACAGCAAAGAGTGAAACCGACTTAAAGATGAAAAGG
CTATTCAGACCTCGATAGACTACTATAGAGTTATTATCAAATGTAAAGGGCATGAATGTA
ATTTTGTAAGGGCTGTGTCCTGTGTCTATAAATAGGTGAACAGTATCCCCGTACTGTTCA
CGCTGACTTGACATTCACTTTTTGC